BAC Information

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BAC

Clone NameB6Ng01-169B03
Chromosome1 (Build37)
Map Location 10,486,796 - 10,613,155
singlet/doubletdoublet
Overlap geneCpa6
Upstream geneRrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneLOC433271, C030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169B03.bB6Ng01-169B03.g
ACCDH960144DH960145
length1,1321,012
definitionDH960144|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B03, 5' end.DH960145|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,612,025 - 10,613,155)(10,486,796 - 10,487,700)
sequence
gaattctgagaacttttcagtttataaatgctaaaccactgaaagaagca
aggcaggttgttgattgatgtttgttgcaatttgttaaatagaaacaaca
ataagaagaacttggctatcttggcagcaaagatcaaactttcctccaga
aattagcaggaagtctaatgatgataccacccccttccctcctttccttt
cttctttcctatctcatgttagggtgttgaaagtgtggaagaaaagggat
ggagaaggaaagaagaaaaagaacttactaagtagcaaaaagacagctac
aggaagttaccctgcatgttagagttaaaagggttgtgattctgacaaat
gctacaacacagatgaaaactgttgaagtaaaccagtcacaggaagacaa
ttccagtaataggaatgactgtgtttccatacaggagtgggagcaaccag
attcacagagaacagtgcttggtggaagcagaaaagaaagaagttcctgc
ttagtcttcttctatttcaaattccagtctttgagacgcttccagaacat
ataccgtgctttgtaactgatctgggttttatcttctgcatttaactgcc
ctgtccacgtcagaatgtttcttagggatacaaagtttgcaaaggaccca
aaggaactcactggacacttaaacttgaggttcttgaggtcagctctgat
gagggctgcagacactacagagaagcatgcttctgcccatgaggctacct
ctgaagaaagttcttagattcactcaggtcacaccactcatcttcttaaa
atcattctcagcttgcctcactcagagtccttgcagtggtctccaaatcc
tgtcactccaaataccctccacccatctcctcctctacagacacactgac
ctcactgttcaatggctgacagttttcatctcacagccttgataccatct
agctctctgcccagagtgtcccttctctggcgctttgtcttctctgtagt
ctttcctgaagtatctcttcagtaatcttcctgagtcaccataatttaac
cagaacattcagatctgttgtttccatagtgtgtttctccccagcctctc
atcccctgtccctcctcagcatcttgcccact
gaattctcacctgaggaataccaaatggctgagaaacacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaatcaaaacaactctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtataaccactgtggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcctgcaatacctctcctgaat
ccagaagatgtcccaactggtaagaaggatacacgctccactatgttcat
agcagccttatttataatagccagaagctggaaagaacccagatgcccct
caacagaggaaaggatacaaaaaatgtggtacatttacataatggagtac
tactcagctattaaaaagaatgaatttatgaaattcctaggcaaatggat
ggacctggagggcatcatcctgagtgaggtaacataatcacaaaagaact
caaatgatatgtactcactgataagtggatattagcccagaaatttagta
taccagagcctagttcttaatagacattaaataaatatgttgtagatagg
tttactacatgtagtttttcatatatataaatatacatatatgtatatat
acatatatatattcattcttgtatacagtgtgtgttttaattaatatcta
cctccacccaccaatccctgtcttttcactcaattattagctatcttcaa
gacttttctaccttaacaagaaatcaagaaagtgggccactctaattgta
tgtacatggcccatgaatgaactcatatatcctgatgttgttaatatttg
ggaacattcataaacaaagacacttcttagtcctaatatgatggcaccat
tttctgatgattgtcagaccacttttgttagagaataaaagaagttcata
aggtgtatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10612025_10613155
seq2: B6Ng01-169B03.b_44_1175 (reverse)

seq1  AGTGTGCAAGATGCTGAGGAAGAGACA-GAGATGAGAGGC--CTGAGAGA  47
      |||| |||||||||||||| || |||| | ||||||||||    |||| |
seq2  AGTGGGCAAGATGCTGAGG-AGGGACAGGGGATGAGAGGCTGGGGAGAAA  49

seq1  CACACTATGG-AACAACAGATCTGAATGTTCTGGTTTAAATATGGTGACT  96
      |||||||||| ||||||||||||||||||||||||| || ||||||||||
seq2  CACACTATGGAAACAACAGATCTGAATGTTCTGGTTAAATTATGGTGACT  99

seq1  CAGGAAGATTACTGAAGAGATACTTCAGGAAAGACTACAGAGAAGACAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATTACTGAAGAGATACTTCAGGAAAGACTACAGAGAAGACAAA  149

seq1  GCGCCAGAGAAAGGGACACTCTGGGCAGAAGAGCTAGATGGTATCAAGGC  196
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  GCGCCAGAG-AAGGGACACTCTGGGCAG-AGAGCTAGATGGTATCAAGGC  197

seq1  TGTGAGATGAAAACTGTCAGCCATTGAACAGTGAGGTCAGTGTGTCTGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGAAAACTGTCAGCCATTGAACAGTGAGGTCAGTGTGTCTGTA  247

seq1  GAGGAGGAGATGGGTGGAGGGTATTTGGAGTGACAGGATTTGGAGACCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGATGGGTGGAGGGTATTTGGAGTGACAGGATTTGGAGACCAC  297

seq1  TGCAAGGACTCTGAGTGAGGCAAGCTGAGAATGATTTTAAGAAGATGAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGACTCTGAGTGAGGCAAGCTGAGAATGATTTTAAGAAGATGAGT  347

seq1  GGTGTGACCTGAGTGAATCTAAGAACTTTCTTCAGAGGTAGCCTCATGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACCTGAGTGAATCTAAGAACTTTCTTCAGAGGTAGCCTCATGGG  397

seq1  CAGAAGCATGCTTCTCTGTAGTGTCTGCAGCCCTCATCAGAGCTGACCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATGCTTCTCTGTAGTGTCTGCAGCCCTCATCAGAGCTGACCTC  447

seq1  AAGAACCTCAAGTTTAAGTGTCCAGTGAGTTCCTTTGGGTCCTTTGCAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTCAAGTTTAAGTGTCCAGTGAGTTCCTTTGGGTCCTTTGCAAA  497

seq1  CTTTGTATCCCTAAGAAACATTCTGACGTGGACAGGGCAGTTAAATGCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCCCTAAGAAACATTCTGACGTGGACAGGGCAGTTAAATGCAG  547

seq1  AAGATAAAACCCAGATCAGTTACAAAGCACGGTATATGTTCTGGAAGCGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAACCCAGATCAGTTACAAAGCACGGTATATGTTCTGGAAGCGT  597

seq1  CTCAAAGACTGGAATTTGAAATAGAAGAAGACTAAGCAGGAACTTCTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGACTGGAATTTGAAATAGAAGAAGACTAAGCAGGAACTTCTTTC  647

seq1  TTTTCTGCTTCCACCAAGCACTGTTCTCTGTGAATCTGGTTGCTCCCACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTTCCACCAAGCACTGTTCTCTGTGAATCTGGTTGCTCCCACT  697

seq1  CCTGTATGGAAACACAGTCATTCCTATTACTGGAATTGTCTTCCTGTGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGGAAACACAGTCATTCCTATTACTGGAATTGTCTTCCTGTGAC  747

seq1  TGGTTTACTTCAACAGTTTTCATCTGTGTTGTAGCATTTGTCAGAATCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTACTTCAACAGTTTTCATCTGTGTTGTAGCATTTGTCAGAATCAC  797

seq1  AACCCTTTTAACTCTAACATGCAGGGTAACTTCCTGTAGCTGTCTTTTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTTAACTCTAACATGCAGGGTAACTTCCTGTAGCTGTCTTTTTG  847

seq1  CTACTTAGTAAGTTCTTTTTCTTCTTTCCTTCTCCATCCCTTTTCTTCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTAAGTTCTTTTTCTTCTTTCCTTCTCCATCCCTTTTCTTCCA  897

seq1  CACTTTCAACACCCTAACATGAGATAGGAAAGAAGAAAGGAAAGGAGGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAACACCCTAACATGAGATAGGAAAGAAGAAAGGAAAGGAGGGA  947

seq1  AGGGGGTGGTATCATCATTAGACTTCCTGCTAATTTCTGGAGGAAAGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGTATCATCATTAGACTTCCTGCTAATTTCTGGAGGAAAGTTT  997

seq1  GATCTTTGCTGCCAAGATAGCCAAGTTCTTCTTATTGTTGTTTCTATTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGCTGCCAAGATAGCCAAGTTCTTCTTATTGTTGTTTCTATTTA  1047

seq1  ACAAATTGCAACAAACATCAATCAACAACCTGCCTTGCTTCTTTCAGTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGCAACAAACATCAATCAACAACCTGCCTTGCTTCTTTCAGTGG  1097

seq1  TTTAGCATTTATAAACTGAAAAGTTCTCAGAATTC  1131
      |||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTTATAAACTGAAAAGTTCTCAGAATTC  1132

seq1: chr1_10486796_10487700
seq2: B6Ng01-169B03.g_174_1077

seq1  ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG  50

seq1  GCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA  100

seq1  AGCTTGTATAACCACTGTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTATAACCACTGTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG  150

seq1  GACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGAATCCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGAATCCAGAAGA  200

seq1  TGTCCCAACTGGTAAGAAGGATACACGCTCCACTATGTTCATAGCAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAACTGGTAAGAAGGATACACGCTCCACTATGTTCATAGCAGCCT  250

seq1  TATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG  300

seq1  GAAAGGATACAAAAAATGTGGTACATTTACATAATGGAGTACTACTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATACAAAAAATGTGGTACATTTACATAATGGAGTACTACTCAGC  350

seq1  TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG  400

seq1  AGGGCATCATCCTGAGTGAGGTAACATAATCACAAAAGAACTCAAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCATCCTGAGTGAGGTAACATAATCACAAAAGAACTCAAATGAT  450

seq1  ATGTACTCACTGATAAGTGGATATTAGCCCAGAAATTTAGTATACCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCACTGATAAGTGGATATTAGCCCAGAAATTTAGTATACCAGAG  500

seq1  CCTAGTTCTTAATAGACATTAAATAAATATGTTGTAGATAGGTTTACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTCTTAATAGACATTAAATAAATATGTTGTAGATAGGTTTACTAC  550

seq1  ATGTAGTTTTTCATATATATAAATATACATATATGTATATATACATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTTTTCATATATATAAATATACATATATGTATATATACATATAT  600

seq1  ATATTCATTCTTGTATACAGTGTGTGTTTTAATTAATATCTACCTCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTCTTGTATACAGTGTGTGTTTTAATTAATATCTACCTCCACC  650

seq1  CACCAATCCCTGTCTTTTCACTCAATTATTAGCTATCTTCAAGACTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCCCTGTCTTTTCACTCAATTATTAGCTATCTTCAAGACTTTTC  700

seq1  TACCTTAACAAGAAATCAAGAAAGTGGGCCACTCTAATTGTATGTACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAACAAGAAATCAAGAAAGTGGGCCACTCTAATTGTATGTACATG  750

seq1  GCCCATGAATGAACTCATATATCCTGATGTTGTTAATATTTGGGAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAATGAACTCATATATCCTGATGTTGTTAATATTTGGGAACATT  800

seq1  CATAAACAAAGACACTTCTTAGGTCCTAATATGATGGCACCATTTTCTGA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATAAACAAAGACACTTCTTA-GTCCTAATATGATGGCACCATTTTCTGA  849

seq1  TGATTGTCAGACCACTTTTGTTAGAGAATAAAAGAAGTTCATAAGGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCAGACCACTTTTGTTAGAGAATAAAAGAAGTTCATAAGGTGTA  899

seq1  TGTTG  905
      |||||
seq2  TGTTG  904