BAC Information

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BAC

Clone NameB6Ng01-169B04
Chromosome1 (Build37)
Map Location 82,900,943 - 83,071,805
singlet/doubletdoublet
Overlap geneA030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb
Downstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169B04.bB6Ng01-169B04.g
ACCDH960146DH960147
length8671,191
definitionDH960146|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B04, 5' end.DH960147|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,900,943 - 82,901,809)(83,070,610 - 83,071,805)
sequence
gaattccagtgttgaaaagatgaataaggagaaggccccttatcccaggt
cctctgtgtcatgcctttgccaatgcaccacccctgtaacatagttcccc
tactcaatgtggactgttcgcttgataacactcagcctgtttagctacct
tgggttcaaagggcttcttagagcttctggtggtaattagagtctcccac
acagtattcccacagtcttatgaacaattaccaactggttatttctgggt
aaaagtgatcatccccatgtcctccgactctggagaattgtttgatgaaa
attttggtcctacctgctgtgttagcaatgctgcctcgacacctgtttta
tttttcccttcaatggcttttaggttttaattctttattcttttctctgt
cagaatgacctaaaaagaaaagaatataccattagcatttttcttgaaaa
aaaaaaaaaagaaaccatttgaaggccttaggtttcaggaaactggtatg
tctctttgttcttgctttggtccctctgtaaaactttgtaccccagcatc
aagaatctagtggctcagctgaacaaagatggcctttgaggttagtgtag
ctgaatggcctggaggatgctttaccatctgctgtctgcacaagcatgct
gacaagttatgtatagttgtatagagcaagtttctctggaggctgagtgt
gtggcctgcagaaactagttgagatagttagatagggagtgacaaagcac
acacattgattggcattttagactttagctgaaaatattttcttttcatt
tcccaactcattcatctggtatttgactttggaggggctgtgtgtgtgtg
tgtgtgtgtgtgtgtgt
gaattctcatagtcagcaggcagaggcaagggttcaaggccagcttggac
tgcagagcaaaccccatctcaaaatgcaaaacaaaagtccctgtggcctt
tcttccatcctcccgtgttcagtttttgaggtcagaaaagacaggctgtg
cttagggtggaatggctacagattataaagcaattcctatgccaatttac
gggaacaccttttaacgtaaagcaggaccaacctgacttatctactcaga
acgcaacatattagttgactaacaagcatgcatagtagttcacttgtatt
tatacaggaacttgctgaggccatacataaatccagggtactggttgact
acattgccagcaactgcagatagagtctatttttacaatgcaaaactatt
gtaagcagtgtgatagataaacagatgcgtatatatcctttgctaagtgg
tttgtctccatcacaagccagtgttgttctagaaaacactacaatgtctt
atggcctgtgtaagaagcaaatgataggaaccaaacagatgtatgctaga
gcccagccccatcctttggtctctccagagtctcttcccagcaggacatg
accagattccttccctctcccatacccaaacgtcgagcttgctcctcctg
gactctctccctcttgtgcctgatttgacccttccctactcttctcatac
atatggtttgctttgcttgacttcttttagttttccatgcagagatctgg
caggtaatcttaaaagctatcgcaaaagggaaagaatgcttatctataca
ttttatgtacataatgtatgacacatctttgtgtaaatcaccgaacccac
atgcacagttttgaacttgattctccttctgtattgggatcaacacgatg
cagagactagatgtaagaaaagtgaaacccttccatgttactttgttagt
gtgtgatttagattcacacgcagacacaaattgctcatatttcacaaaat
gtctaaactatcttaagacaatgtgtagtagctacaaacttaatcttcaa
gaatctttctgttcactttcaaaaatagcatcttaacaaatgccacaaga
acagttataggcagctacttaactcattttcttcttttaattctatggtc
ccagtgtcttgttgcttaatgccaaggaacgcacaaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82900943_82901809
seq2: B6Ng01-169B04.b_45_911

seq1  GAATTCCAGTGTTGAAAAGATGAATAAGGAGAAGGCCCCTTATCCCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTTGAAAAGATGAATAAGGAGAAGGCCCCTTATCCCAGGT  50

seq1  CCTCTGTGTCATGCCTTTGCCAATGCACCACCCCTGTAACATAGTTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTCATGCCTTTGCCAATGCACCACCCCTGTAACATAGTTCCCC  100

seq1  TACTCAATGTGGACTGTTCGCTTGATAACACTCAGCCTGTTTAGCTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATGTGGACTGTTCGCTTGATAACACTCAGCCTGTTTAGCTACCT  150

seq1  TGGGTTCAAAGGGCTTCTTAGAGCTTCTGGTGGTAATTAGAGTCTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAAAGGGCTTCTTAGAGCTTCTGGTGGTAATTAGAGTCTCCCAC  200

seq1  ACAGTATTCCCACAGTCTTATGAACAATTACCAACTGGTTATTTCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTCCCACAGTCTTATGAACAATTACCAACTGGTTATTTCTGGGT  250

seq1  AAAAGTGATCATCCCCATGTCCTCCGACTCTGGAGAATTGTTTGATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGATCATCCCCATGTCCTCCGACTCTGGAGAATTGTTTGATGAAA  300

seq1  ATTTTGGTCCTACCTGCTGTGTTAGCAATGCTGCCTCGACACCTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTCCTACCTGCTGTGTTAGCAATGCTGCCTCGACACCTGTTTTA  350

seq1  TTTTTCCCTTCAATGGCTTTTAGGTTTTAATTCTTTATTCTTTTCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTCAATGGCTTTTAGGTTTTAATTCTTTATTCTTTTCTCTGT  400

seq1  CAGAATGACCTAAAAAGAAAAGAATATACCATTAGCATTTTTCTTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGACCTAAAAAGAAAAGAATATACCATTAGCATTTTTCTTGAAAA  450

seq1  AAAAAAAAAAGAAACCATTTGAAGGCCTTAGGTTTCAGGAAACTGGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAACCATTTGAAGGCCTTAGGTTTCAGGAAACTGGTATG  500

seq1  TCTCTTTGTTCTTGCTTTGGTCCCTCTGTAAAACTTTGTACCCCAGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTTCTTGCTTTGGTCCCTCTGTAAAACTTTGTACCCCAGCATC  550

seq1  AAGAATCTAGTGGCTCAGCTGAACAAAGATGGCCTTTGAGGTTAGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTAGTGGCTCAGCTGAACAAAGATGGCCTTTGAGGTTAGTGTAG  600

seq1  CTGAATGGCCTGGAGGATGCTTTACCATCTGCTGTCTGCACAAGCATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGCCTGGAGGATGCTTTACCATCTGCTGTCTGCACAAGCATGCT  650

seq1  GACAAGTTATGTATAGTTGTATAGAGCAAGTTTCTCTGGAGGCTGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTATGTATAGTTGTATAGAGCAAGTTTCTCTGGAGGCTGAGTGT  700

seq1  GTGGCCTGCAGAAACTAGTTGAGATAGTTAGATAGGGAGTGACAAAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGCAGAAACTAGTTGAGATAGTTAGATAGGGAGTGACAAAGCAC  750

seq1  ACACATTGATTGGCATTTTAGACTTTAGCTGAAAATATTTTCTTTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGATTGGCATTTTAGACTTTAGCTGAAAATATTTTCTTTTCATT  800

seq1  TCCCAACTCATTCATCTGGTATTTGACTTTGGAGGGGCTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTCATTCATCTGGTATTTGACTTTGGAGGGGCTGTGTGTGTGTG  850

seq1  TGTGTGTGTGTGTGTGT  867
      |||||||||||||||||
seq2  TGTGTGTGTGTGTGTGT  867

seq1: chr1_83070610_83071805
seq2: B6Ng01-169B04.g_69_1259 (reverse)

seq1  CATTTTTGTGCTGTCCCCTTGGCATGTAGCAACAGAACAAAGGG-CACTA  49
      |||||||||||  |  |||||||||  |||||||  |||  ||| |  ||
seq2  CATTTTTGTGCGTT--CCTTGGCATTAAGCAACAAGACACTGGGACCATA  48

seq1  GA--TTGAAGAAGAAAATGAGTTTAGTAGCTGGCTATAACATGTCTTTGT  97
      ||  |  |||||||||||||||| |||||||| ||||||| |||  ||||
seq2  GAATTAAAAGAAGAAAATGAGTTAAGTAGCTGCCTATAAC-TGTTCTTGT  97

seq1  GGCCATTTTGTTAGATGCTATTTTTG-AAGTGAACAGAAAGATTCCTTGA  146
      || |||||  | |||||||||||||| |||||||||||||||||| |  |
seq2  GG-CATTTGTTAAGATGCTATTTTTGAAAGTGAACAGAAAGATTCTTGAA  146

seq1  GATGTAAAGTTTGTAGCTACTACACATTGTCTTAAGATAGTTTAAGACAT  196
      ||  | ||||||||||||||||||||||||||||||||||||| ||||||
seq2  GA--TTAAGTTTGTAGCTACTACACATTGTCTTAAGATAGTTT-AGACAT  193

seq1  TTTGTTGAATATGAGCAATTTGTGTCTGCGTGTGAATCTTAAATCACACA  246
      |||||  ||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTGAAATATGAGCAATTTGTGTCTGCGTGTGAATC-TAAATCACACA  242

seq1  CTAACAAAGTAACATGGAAGGGTTTTCACTTTTCTTACATCTAGTCTCCT  296
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CTAACAAAGTAACATGGAAGGG-TTTCACTTTTCTTACATCTAGTCT-CT  290

seq1  GCATCGTGTTGATCCCAATACAGAAGGAGAATCAAGTTCAAAACTGTGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGTGTTGATCCCAATACAGAAGGAGAATCAAGTTCAAAACTGTGCA  340

seq1  TGTGGGTTCGGTGATTTACAC-AAGATGTGTCATACATTATGTACATAAA  395
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGGGTTCGGTGATTTACACAAAGATGTGTCATACATTATGTACATAAA  390

seq1  ATGTATAGATAAGCATTCTTTCCCTTTTGCGATAGCTTTTAAGATTACCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGATAAGCATTCTTTCCCTTTTGCGATAGCTTTTAAGATTACCT  440

seq1  GCCAGATCTCTGCATGGAAAACTAAAAGAAGTCAAGCAAAGCAAACCATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCTCTGCATGGAAAACTAAAAGAAGTCAAGCAAAGCAAACCATA  490

seq1  TGTATGAGAAGAGTAGGGAAGGGTCAAATCAGGCACAAGAGGGAGAGAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGAAGAGTAGGGAAGGGTCAAATCAGGCACAAGAGGGAGAGAGT  540

seq1  CCAGGAGGAGCAAGCTCGACGTTTGGGTATGGGAGAGGGAAGGAATCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGAGCAAGCTCGACGTTTGGGTATGGGAGAGGGAAGGAATCTGG  590

seq1  TCATGTCCTGCTGGGAAGAGACTCTGGAGAGACCAAAGGATGGGGCTGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCTGCTGGGAAGAGACTCTGGAGAGACCAAAGGATGGGGCTGGG  640

seq1  CTCTAGCATACATCTGTTTGGTTCCTATCATTTGCTTCTTACACAGGCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCATACATCTGTTTGGTTCCTATCATTTGCTTCTTACACAGGCCA  690

seq1  TAAGACATTGTAGTGTTTTCTAGAACAACACTGGCTTGTGATGGAGACAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATTGTAGTGTTTTCTAGAACAACACTGGCTTGTGATGGAGACAA  740

seq1  ACCACTTAGCAAAGGATATATACGCATCTGTTTATCTATCACACTGCTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTAGCAAAGGATATATACGCATCTGTTTATCTATCACACTGCTTA  790

seq1  CAATAGTTTTGCATTGTAAAAATAGACTCTATCTGCAGTTGCTGGCAATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTTTGCATTGTAAAAATAGACTCTATCTGCAGTTGCTGGCAATG  840

seq1  TAGTCAACCAGTACCCTGGATTTATGTATGGCCTCAGCAAGTTCCTGTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAACCAGTACCCTGGATTTATGTATGGCCTCAGCAAGTTCCTGTAT  890

seq1  AAATACAAGTGAACTACTATGCATGCTTGTTAGTCAACTAATATGTTGCG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGTGAACTACTATGCATGCTTGTTAGTCAACTAATATGTTGCG  940

seq1  TTCTGAGTAGATAAGTCAGGTTGGTCCTGCTTTACGTTAAAAGGTGTTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTAGATAAGTCAGGTTGGTCCTGCTTTACGTTAAAAGGTGTTCC  990

seq1  CGTAAATTGGCATAGGAATTGCTTTATAATCTGTAGCCATTCCACCCTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATTGGCATAGGAATTGCTTTATAATCTGTAGCCATTCCACCCTAA  1040

seq1  GCACAGCCTGTCTTTTCTGACCTCAAAAACTGAACACGGGAGGATGGAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCTGTCTTTTCTGACCTCAAAAACTGAACACGGGAGGATGGAAG  1090

seq1  AAAGGCCACAGGGACTTTTGTTTTGCATTTTGAGATGGGGTTTGCTCTGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACAGGGACTTTTGTTTTGCATTTTGAGATGGGGTTTGCTCTGC  1140

seq1  AGTCCAAGCTGGCCTTGAACCCTTGCCTCTGCCTGCTGACTATGAGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGCTGGCCTTGAACCCTTGCCTCTGCCTGCTGACTATGAGAATT  1190

seq1  C  1196
      |
seq2  C  1191