BAC Information

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BAC

Clone NameB6Ng01-169F21
Chromosome1 (Build37)
Map Location 174,063,987 - 174,209,322
singlet/doubletdoublet
Overlap genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2
Upstream geneSdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa
Downstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169F21.bB6Ng01-169F21.g
ACCDH960365DH960366
length1,0581,076
definitionDH960365|Mus musculus domesticus DNA, BAC clone: B6Ng01-169F21, 5' end.DH960366|Mus musculus domesticus DNA, BAC clone: B6Ng01-169F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,063,987 - 174,065,065)(174,208,245 - 174,209,322)
sequence
gaattctcaaaaatgtcactacaaagactgcataccgtggccagcaggaa
tcagattgctagcctgattttttttgttgcttttgtgttttctgggactt
ttccttttttttttttttaatctcttattctttccgttttctagttacag
gccttgggccatcctccaaaagagctggctggggagatggtgagtttgtc
ttctgtattttaacccagttttcagtttgcagacgccagtaatccttagg
taatccatatagggtgatcactgtggctgctagggacagaccttcagaag
ctctgacttgaaatatgagtgattgtctcagtccctttgtctcttctcca
gcctcctggcctcaactttgacctggatgctctcaatctgtcgggccccc
caggtgctaatggcgaacagtgtctgatcatgtgaaacacagcacagttt
cctccctgagccccagccgtggggaacatctggagtcaacagagtcactg
ggaactgaggcaggagtatcatctgtgggagctggctgccccacccacac
tctccatcccattcaagactgtgccataccagctgatctgtaggcctttt
ctatgagtcctactccatcagggtttctgctgttagaaacaggccaatta
tctgccaggtgaaggaaggcatcccttgtggggcatttcacttcttccca
ctccccaaataatgttacacatggcagtactcatgttccccttgattccc
agggacgtcgcgccttgtttctcctccctctctgtgtctggggaggagga
gctgagtcctgactctgtgctcctgttaggcagggcctctgggaagagga
gaaatgtagcctgagctggggctggacgctggtcaccgcatatccttgcc
ttcctttggaattctcttaagggaaaggaattttgcacttagccatggtc
gggtgagcaaagctggctttctgtccctagtgctgagcccaatccccttc
tctgagaactcatgttgctgcctgttcttctacagctctggattagggag
ccacctct
gaattctctcttcaccatactctagtactggggattgaacccaaaactca
ctcgtgttaggcaagcactccacccctaagctatgtccctagtgatgaca
ggagcttatataccaatgtgctgaattctgttggtgcttcactgagcagt
ttcacagacctcttcagataccttctccctgtgtcctgtgtgtacaggtt
cctgctatctcattagcatacgaagcagctgagagtgacatcatgaagag
gcagccacgaaactcccagacagacaagctggtgaacgagaggcttatca
gcatggcttacggacagattggtgcgcccagccagggcttgggagggtat
cccctaaaggttgcttctagttcccgagagagatgagtgacgggtcagga
aagagtccagctgccggagagccagagacttccatctctgtctccaaggg
atggccctttccctcccctttctctactcaagtcccaccttttgcttaca
actgctttcaggcatgatccaggctctgggtggcttctttacctactttg
tgatactggcagagaatgggtttctaccatcgcggctgctagggatccgc
ctggactgggatgatcggactaccaacgacctggaggacagctatggaca
agagtgggtgagtggggctgtggacgtgtgccgcagacgagaaggggcgg
gactgaggctgaggtcctggttggaattggctaggagcagccaagaggct
gatgatgggctaagtgccaggtttaacaagtgtcccttcctctcttctgc
ccagacctacgagcagcggaaggtggtggagttcacatgccacacggcct
tcttcgctagcatcgtggttgtgcagtgggctgacctcatcatctgcaga
cttgtcgcaactcagtgttccagcaggcatgaagtgagcacctatcacta
ccggtccctaccaagcagaggctctgtacatagtcaccaacccacatagg
ccaggattccacaccagctcatctaagctccgggggctccaggtttgcta
aagaacttgttctgttgtaattacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174063987_174065065
seq2: B6Ng01-169F21.b_45_1102

seq1  GAATTCTCAAAAATGTCACTACAAAGACTGCATACCGTGGCCAGCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAATGTCACTACAAAGACTGCATACCGTGGCCAGCAGGAA  50

seq1  TCAGATTGCTAGCCTGATTTTTTTTGTTGCTTTTGTGTTTTCTGGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGCTAGCCTGATTTTTTTTGTTGCTTTTGTGTTTTCTGGGACTT  100

seq1  TTCCTTTTTTTTTTTTTTAATCTCTTATTCTTTCCGTTTTCTAGTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTTTTTTTTTAATCTCTTATTCTTTCCGTTTTCTAGTTACAG  150

seq1  GCCTTGGGCCATCCTCCAAAAGAGCTGGCTGGGGAGATGGTGAGTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGCCATCCTCCAAAAGAGCTGGCTGGGGAGATGGTGAGTTTGTC  200

seq1  TTCTGTATTTTAACCCAGTTTTCAGTTTGCAGACGCCAGTAATCCTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATTTTAACCCAGTTTTCAGTTTGCAGACGCCAGTAATCCTTAGG  250

seq1  TAATCCATATAGGGTGATCACTGTGGCTGCTAGGGACAGACCTTCAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATATAGGGTGATCACTGTGGCTGCTAGGGACAGACCTTCAGAAG  300

seq1  CTCTGACTTGAAATATGAGTGATTGTCTCAGTCCCTTTGTCTCTTCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTTGAAATATGAGTGATTGTCTCAGTCCCTTTGTCTCTTCTCCA  350

seq1  GCCTCCTGGCCTCAACTTTGACCTGGATGCTCTCAATCTGTCGGGCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGGCCTCAACTTTGACCTGGATGCTCTCAATCTGTCGGGCCCCC  400

seq1  CAGGTGCTAATGGCGAACAGTGTCTGATCATGTGAAACACAGCACAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTAATGGCGAACAGTGTCTGATCATGTGAAACACAGCACAGTTT  450

seq1  CCTCCCTGAGCCCCAGCCGTGGGGAACATCTGGAGTCAACAGAGTCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGAGCCCCAGCCGTGGGGAACATCTGGAGTCAACAGAGTCACTG  500

seq1  GGAACTGAGGCAGGAGTATCATCTGTGGGAGCTGGCTGCCCCACCCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAGGCAGGAGTATCATCTGTGGGAGCTGGCTGCCCCACCCACAC  550

seq1  TCTCCATCCCATTCAAGACTGTGCCATACCAGCTGATCTGTAGGCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCCCATTCAAGACTGTGCCATACCAGCTGATCTGTAGGCCTTTT  600

seq1  CTATGAGTCCTACTCCATCAGGGTTTCTGCTGTTAGAAACAGGCCAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTCCTACTCCATCAGGGTTTCTGCTGTTAGAAACAGGCCAATTA  650

seq1  TCTGCCAGGTGAAGGAAGGCATCCCTTGTGGGGCATTTCACTTCTTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGTGAAGGAAGGCATCCCTTGTGGGGCATTTCACTTCTTCCCA  700

seq1  CTCCCCAAATAATGTTACACATGGCAGTACTCATGTTCCCCTTGATTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAAATAATGTTACACATGGCAGTACTCATGTTCCCCTTGATTCCC  750

seq1  AGGGACGTCGCGCCTTGTTTCTCCTCCCTCTCTGTGTCTGGGGAGGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGTCGCGCCTTGTTTCTCCTCCCTCTCTGTGTCTGGGGAGGAGGA  800

seq1  GCTGAGTCCTGACTCTGTGCTCCTGTTAGGCAGGGCCTCTGGGAAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCCTGACTCTGTGCTCCTGTTAGGCAGGGCCTCTGGGAAGAGGA  850

seq1  GAAATGTAGCCTGAGCTGGGGCTGGAGGCTGGTCACCGCATATCCTTGCC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAATGTAGCCTGAGCTGGGGCTGGACGCTGGTCACCGCATATCCTTGCC  900

seq1  TTCCTTTGGAATTCTCTTAAGGGAAAGGAATTTTGCACTTAGCCATGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGAATTCTCTTAAGGGAAAGGAATTTTGCACTTAGCCATGGTC  950

seq1  GGGTTGGAAGCAAAGCCTTGGGCTTTTCCTGTCCCTAGGTGCTGAGCCCC  1000
      ||||    ||||||||    ||||||  ||||||||| |||||||| |||
seq2  GGGT---GAGCAAAGC---TGGCTTT--CTGTCCCTA-GTGCTGAG-CCC  990

seq1  AATCCCCCTTTCCTCCTGAGAACTCATGTTGCTGCCCTGGTTCTTTCTAC  1050
      ||||||| | |    |||||||||||||||||||||   |||| ||||||
seq2  AATCCCCTTCT----CTGAGAACTCATGTTGCTGCC--TGTTC-TTCTAC  1033

seq1  AGCTCTGGGATTTAGGGGGAGCCAACTCT  1079
      |||||| |||||    |||||||| ||||
seq2  AGCTCT-GGATT---AGGGAGCCACCTCT  1058

seq1: chr1_174208245_174209322
seq2: B6Ng01-169F21.g_66_1141 (reverse)

seq1  ATGTTATTACAACCAGAC-AGTTCCTTAGCAAACCT-GAGCCCCGGGAGC  48
      |||| ||||||||   || ||||| ||||||||||| ||||||| |||||
seq2  ATGTAATTACAACAGAACAAGTTCTTTAGCAAACCTGGAGCCCCCGGAGC  50

seq1  TTAGGTGAGCTGGTGTTGGAATCCTGGCCTATGTGGGTTGGTGACTATGT  98
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAGATGAGCTGGTG-TGGAATCCTGGCCTATGTGGGTTGGTGACTATGT  99

seq1  ACAGAGGCCTCTGCCTGGTAGGGACCGGTAGTGATAGGTGCTCACTTCAT  148
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGA-GCCTCTGCTTGGTAGGGACCGGTAGTGATAGGTGCTCACTTCAT  148

seq1  GCCCTGCTGGAACACTGAGTTGCGACGGGTCTTGCAGATGATGAGGTCAG  198
      | ||||||||||||||||||||||||  ||| ||||||||||||||||||
seq2  G-CCTGCTGGAACACTGAGTTGCGACAAGTC-TGCAGATGATGAGGTCAG  196

seq1  CCCACTGCACAACCACGATGCTAGCGAAGAAGGCCGTGTGGCATGTGAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCACAACCACGATGCTAGCGAAGAAGGCCGTGTGGCATGTGAAC  246

seq1  TCCACCACCTTCCGCTGCTCGTAGGTCTGGGCAGAAGAGAGGAAGGGACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACCTTCCGCTGCTCGTAGGTCTGGGCAGAAGAGAGGAAGGGACA  296

seq1  CTTGTTAAACCTGGCACTTAGCCCATCATCAGCCTCTTGGCTGCTCCTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAACCTGGCACTTAGCCCATCATCAGCCTCTTGGCTGCTCCTAG  346

seq1  CCAATTCCAACCAGGACCTCAGCCTCAGTCCCGCCCCTTCTCGTCTGCGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCAACCAGGACCTCAGCCTCAGTCCCGCCCCTTCTCGTCTGCGG  396

seq1  CACACGTCCACAGCCCCACTCACCCACTCTTGTCCATAGCTGTCCTCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTCCACAGCCCCACTCACCCACTCTTGTCCATAGCTGTCCTCCAG  446

seq1  GTCGTTGGTAGTCCGATCATCCCAGTCCAGGCGGATCCCTAGCAGCCGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGGTAGTCCGATCATCCCAGTCCAGGCGGATCCCTAGCAGCCGCG  496

seq1  ATGGTAGAAACCCATTCTCTGCCAGTATCACAAAGTAGGTAAAGAAGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAAACCCATTCTCTGCCAGTATCACAAAGTAGGTAAAGAAGCCA  546

seq1  CCCAGAGCCTGGATCATGCCTGAAAGCAGTTGTAAGCAAAAGGTGGGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCCTGGATCATGCCTGAAAGCAGTTGTAAGCAAAAGGTGGGACT  596

seq1  TGAGTAGAGAAAGGGGAGGGAAAGGGCCATCCCTTGGAGACAGAGATGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAGAAAGGGGAGGGAAAGGGCCATCCCTTGGAGACAGAGATGGA  646

seq1  AGTCTCTGGCTCTCCGGCAGCTGGACTCTTTCCTGACCCGTCACTCATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGGCTCTCCGGCAGCTGGACTCTTTCCTGACCCGTCACTCATCT  696

seq1  CTCTCGGGAACTAGAAGCAACCTTTAGGGGATACCCTCCCAAGCCCTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGGAACTAGAAGCAACCTTTAGGGGATACCCTCCCAAGCCCTGGC  746

seq1  TGGGCGCACCAATCTGTCCGTAAGCCATGCTGATAAGCCTCTCGTTCACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGCACCAATCTGTCCGTAAGCCATGCTGATAAGCCTCTCGTTCACC  796

seq1  AGCTTGTCTGTCTGGGAGTTTCGTGGCTGCCTCTTCATGATGTCACTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCTGTCTGGGAGTTTCGTGGCTGCCTCTTCATGATGTCACTCTC  846

seq1  AGCTGCTTCGTATGCTAATGAGATAGCAGGAACCTGTACACACAGGACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTCGTATGCTAATGAGATAGCAGGAACCTGTACACACAGGACAC  896

seq1  AGGGAGAAGGTATCTGAAGAGGTCTGTGAAACTGCTCAGTGAAGCACCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGGTATCTGAAGAGGTCTGTGAAACTGCTCAGTGAAGCACCAA  946

seq1  CAGAATTCAGCACATTGGTATATAAGCTCCTGTCATCACTAGGGACATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCAGCACATTGGTATATAAGCTCCTGTCATCACTAGGGACATAG  996

seq1  CTTAGGGGTGGAGTGCTTGCCTAACACGAGTGAGTTTTGGGTTCAATCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGGTGGAGTGCTTGCCTAACACGAGTGAGTTTTGGGTTCAATCCC  1046

seq1  CAGTACTAGAGTATGGTGAAGAGAGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  CAGTACTAGAGTATGGTGAAGAGAGAATTC  1076