BAC Information

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BAC

Clone NameB6Ng01-169P07
Chromosome1 (Build37)
Map Location 138,390,313 - 138,490,326
singlet/doubletdoublet
Overlap geneKif14
Upstream geneNav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59
Downstream geneZfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P07.bB6Ng01-169P07.g
ACCDH960793DH960794
length9541,064
definitionDH960793|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P07, 5' end.DH960794|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,489,371 - 138,490,326)(138,390,313 - 138,391,380)
sequence
gaattccaggtttccaggttcagtaagagaccttgtctcaaaatataagg
tagagagtgacaaaggaagacacctaaccttcactgtggtagtttgaatg
agaaacgccaccataggctcacatatttcaatacttgttgtctcagttag
ggtttctttctattgctgtgaagagacaccacgaccaaggcaactctttt
tttttttttttttagatttatttatttttatatgtaagtacactgtagct
gtcatcagacacaccagaagagggcatcagatctcattacggatggttgt
gagccaccatgtggttgctgggatttgaactcaggaccttcagaagagca
gtccatgctcttaaccactgagccttctcgccagcccccgaaggcaactc
ttataaaggcaaacatttaatttgctggcttctttgctgagatggctcag
gggttaacaatgagttcccatgcccagcctctggcttctgaagacagccg
cactcaagagcacatagccacaccaccacacattggcatgattaaataaa
tctttagaaataatacatagccaatgaatgtgcataaaatatccaggggc
tggcttacagttgcagaggtttagtccattatcatcatggcaggaagcat
ggcagcacgcaggcagacctggtgctggaggaacaaaggaacatcttcat
ccaaagatatcagaaagagactgtcactgaaaagtaacttgagcaaaaga
gatcacaaagcccacccctcacagtgggcacacttcctcctacaaggcca
cacctactccaataaaggctacgcctcctaatagtgccactccctatggg
ccaagcatttaaacacaggaatctataggggcattcctatcaaaccacca
gacttggttcccaagtggtgaaaccggttgtgatgatagactcactctgt
aaac
gaattcttgcacaatgctggttgtggacttgtgacaacagagtgcacaga
tgtgggagagcaggatgataagggaaatcgtttaaatctatgtggttaac
acagtcttctggtaggagacacatcacccagcagtgaaccattttgctca
gatacattggggtgctttaattgagctattattctctaattacaaatctc
ggagcctaatcaatgctaaaggcctagagttagggcttggcttttgctga
agttttctgtatctgtctaggtagcctttgaagtttcctattttctgaat
aagtctcctctgcatgtgtggtgtttgtaagcgattcttcagctccccac
tgcaaggtctgttagttagatggctaaggctacactttgtctccctgctt
catcctgtggaatgcctcgcctttccattaggaaagcccatttataggac
aagcgatgcaatcagttacaaaagcagaaacttagaaaaataaaagcaca
taaaaacactctcttggaggaacccattgtcagtatttgattgttttttc
cttgaacttttttttctttgtatttttttttcattttcaggaaacatttg
ttttagcattttgatttgtttttccaggagttaataaaaaatataatgaa
aacttcctccacaccagcagttacaattgctggatgtgccagtggttttt
tattgtcgttgttgctgttcatcaaacgtcaaagtatttttgggggaaaa
atataataatttaaaattattgttgctataaattggtatgaacttactac
cagagggataatctaagcagacttattcctcttacttgttcttactttta
aagtgccccaccattatagcaatgtacttttttattccaacagtactatc
agaaattttggaggaacagtgagtattgtcccagctggagagcaaagaca
tatgtaaacgggacgcacatctcggagcccacagtgttacatcatgtagt
cggcagagctgttaggtgccagcgtgtcatcttgttgtcatctcttttct
cccccaagtcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138489371_138490326
seq2: B6Ng01-169P07.b_46_999 (reverse)

seq1  GTTTACAGAGTGAGTTCTAATCCTTCACAAACAGGTTCACCAACTGGGGA  50
      |||||||||||||| ||||   | |||||| | | |||||||  |||| |
seq2  GTTTACAGAGTGAG-TCTA--TCATCACAACCGGTTTCACCACTTGGGAA  47

seq1  CCAAGTCTGGTGGTTTGAATAGGAATGGCCCCTATAGATTCCTGTGTTTG  100
      ||||||||||||||||| |||||||| |||||||||||||||||||||| 
seq2  CCAAGTCTGGTGGTTTG-ATAGGAAT-GCCCCTATAGATTCCTGTGTTTA  95

seq1  AATGCTTGGCCCATAGGGAGTGGCACTATTAGGAGGCGTAGCC-TTATTG  149
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGCTTGGCCCATAGGGAGTGGCACTATTAGGAGGCGTAGCCTTTATTG  145

seq1  GAGTAGGTGTGGCCTTGTAGGAGGAAGTGTG-CCACTGTGAGGGGTGGGC  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGTAGGTGTGGCCTTGTAGGAGGAAGTGTGCCCACTGTGAGGGGTGGGC  195

seq1  TTTGTGATCTCTTTTGCTCAAGTTAC-TTTCAGTGACAGTCTCTTTCTGA  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGTGATCTCTTTTGCTCAAGTTACTTTTCAGTGACAGTCTCTTTCTGA  245

seq1  TATCTTTGGATGAAGATGTTCCTTTGTTCCTCCAGCACCAGGTCTGCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGGATGAAGATGTTCCTTTGTTCCTCCAGCACCAGGTCTGCCTG  295

seq1  CGTGCTGCCATGCTTCCTGCCATGATGATAATGGACTAAACCTCTGCAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGCCATGCTTCCTGCCATGATGATAATGGACTAAACCTCTGCAAC  345

seq1  TGTAAGCCAGCCCCTGGATATTTTATGCACATTCATTGGCTATGTATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCAGCCCCTGGATATTTTATGCACATTCATTGGCTATGTATTAT  395

seq1  TTCTAAAGATTTATTTAATCATGCCAATGTGTGGTGGTGTGGCTATGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGATTTATTTAATCATGCCAATGTGTGGTGGTGTGGCTATGTGC  445

seq1  TCTTGAGTGCGGCTGTCTTCAGAAGCCAGAGGCTGGGCATGGGAACTCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGCGGCTGTCTTCAGAAGCCAGAGGCTGGGCATGGGAACTCAT  495

seq1  TGTTAACCCCTGAGCCATCTCAGCAAAGAAGCCAGCAAATTAAATGTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACCCCTGAGCCATCTCAGCAAAGAAGCCAGCAAATTAAATGTTTG  545

seq1  CCTTTATAAGAGTTGCCTTCGGGGGCTGGCGAGAAGGCTCAGTGGTTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAAGAGTTGCCTTCGGGGGCTGGCGAGAAGGCTCAGTGGTTAAG  595

seq1  AGCATGGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACA  645

seq1  TGGTGGCTCACAACCATCCGTAATGAGATCTGATGCCCTCTTCTGGTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCCGTAATGAGATCTGATGCCCTCTTCTGGTGTG  695

seq1  TCTGATGACAGCTACAGTGTACTTACATATAAAAATAAATAAATCTAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGACAGCTACAGTGTACTTACATATAAAAATAAATAAATCTAAAA  745

seq1  AAAAAAAAAAAAAGAGTTGCCTTGGTCGTGGTGTCTCTTCACAGCAATAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAGTTGCCTTGGTCGTGGTGTCTCTTCACAGCAATAG  795

seq1  AAAGAAACCCTAACTGAGACAACAAGTATTGAAATATGTGAGCCTATGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCCTAACTGAGACAACAAGTATTGAAATATGTGAGCCTATGGT  845

seq1  GGCGTTTCTCATTCAAACTACCACAGTGAAGGTTAGGTGTCTTCCTTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTTCTCATTCAAACTACCACAGTGAAGGTTAGGTGTCTTCCTTTGT  895

seq1  CACTCTCTACCTTATATTTTGAGACAAGGTCTCTTACTGAACCTGGAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTACCTTATATTTTGAGACAAGGTCTCTTACTGAACCTGGAAAC  945

seq1  CTGGAATTC  956
      |||||||||
seq2  CTGGAATTC  954

seq1: chr1_138390313_138391380
seq2: B6Ng01-169P07.g_68_1131

seq1  GAATTCTTGCACAATGCTGGTTGTGGACTTGTGACAACAGAGTGCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCACAATGCTGGTTGTGGACTTGTGACAACAGAGTGCACAGA  50

seq1  TGTGGGAGAGCAGGATGATAAGGGAAATCGTTTAAATCTATGTGGTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGAGCAGGATGATAAGGGAAATCGTTTAAATCTATGTGGTTAAC  100

seq1  ACAGTCTTCTGGTAGGAGACACATCACCCAGCAGTGAACCATTTTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTCTGGTAGGAGACACATCACCCAGCAGTGAACCATTTTGCTCA  150

seq1  GATACATTGGGGTGCTTTAATTGAGCTATTATTCTCTAATTACAAATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTGGGGTGCTTTAATTGAGCTATTATTCTCTAATTACAAATCTC  200

seq1  GGAGCCTAATCAATGCTAAAGGCCTAGAGTTAGGGCTTGGCTTTTGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAATCAATGCTAAAGGCCTAGAGTTAGGGCTTGGCTTTTGCTGA  250

seq1  AGTTTTCTGTATCTGTCTAGGTAGCCTTTGAAGTTTCCTATTTTCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTGTATCTGTCTAGGTAGCCTTTGAAGTTTCCTATTTTCTGAAT  300

seq1  AAGTCTCCTCTGCATGTGTGGTGTTTGTAAGCGATTCTTCAGCTCCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTCTGCATGTGTGGTGTTTGTAAGCGATTCTTCAGCTCCCCAC  350

seq1  TGCAAGGTCTGTTAGTTAGATGGCTAAGGCTACACTTTGTCTCCCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTCTGTTAGTTAGATGGCTAAGGCTACACTTTGTCTCCCTGCTT  400

seq1  CATCCTGTGGAATGCCTCGCCTTTCCATTAGGAAAGCCCATTTATAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTGGAATGCCTCGCCTTTCCATTAGGAAAGCCCATTTATAGGAC  450

seq1  AAGCGATGCAATCAGTTACAAAAGCAGAAACTTAGAAAAATAAAAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGATGCAATCAGTTACAAAAGCAGAAACTTAGAAAAATAAAAGCACA  500

seq1  TAAAAACACTCTCTTGGAGGAACCCATTGTCAGTATTTGATTGTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACTCTCTTGGAGGAACCCATTGTCAGTATTTGATTGTTTTTTC  550

seq1  CTTGAACTTTTTTTTCTTTGTATTTTTTTTTCATTTTCAGGAAACATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTTTTTTTCTTTGTATTTTTTTTTCATTTTCAGGAAACATTTG  600

seq1  TTTTAGCATTTTGATTTGTTTTTCCAGGAGTTAATAAAAAATATAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCATTTTGATTTGTTTTTCCAGGAGTTAATAAAAAATATAATGAA  650

seq1  AACTTCCTCCACACCAGCAGTTACAATTGCTGGATGTGCCAGTGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTCCACACCAGCAGTTACAATTGCTGGATGTGCCAGTGGTTTTT  700

seq1  TATTGTCGTTGTTGCTGTTCATCAAACGTCAAAGTATTTTTGGGGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCGTTGTTGCTGTTCATCAAACGTCAAAGTATTTTTGGGGGAAAA  750

seq1  ATATAATAATTTAAAATTATTGTTGCTATAAATTGGTATGAACTTACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAATTTAAAATTATTGTTGCTATAAATTGGTATGAACTTACTAC  800

seq1  CAGAGGGATAATCTAAGCAGACTTATTCCTCTTACTTGTTCTTACTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGATAATCTAAGCAGACTTATTCCTCTTACTTGTTCTTACTTTTA  850

seq1  AAGTGCCCCACCATTATAGCAATGTAC-TTTTTATTCCAACAGTACTATC  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTGCCCCACCATTATAGCAATGTACTTTTTTATTCCAACAGTACTATC  900

seq1  AGAAATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGAC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAG-AGCAAAGAC  949

seq1  ATATGTAAACGGGACGCACATCTCGGAGCCCACAGTGTTACATCATGTAA  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATGTAAACGGGACGCACATCTCGGAGCCCACAGTGTTACATCATGT-A  998

seq1  GTCGGCAGGAGCTGTTAGGTGCCAGCGTGTCATCTGTGTTTGTCATCTCT  1049
      ||||||| ||||||||||||||||||||||||||| || |||||||||||
seq2  GTCGGCA-GAGCTGTTAGGTGCCAGCGTGTCATCT-TG-TTGTCATCTCT  1045

seq1  TTTCTCCCCCAAGTCACTG  1068
      |||||||||||||||||||
seq2  TTTCTCCCCCAAGTCACTG  1064