BAC Information

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BAC

Clone NameB6Ng01-170C08
Chromosome1 (Build37)
Map Location 177,467,241 - 177,593,538
singlet/doubletdoublet
Overlap geneFh1, Kmo, Opn3
Upstream geneFmn2, Grem2, Rgs7
Downstream geneChml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C08.bB6Ng01-170C08.g
ACCDH960933DH960934
length1,1461,076
definitionDH960933|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C08, 5' end.DH960934|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,467,241 - 177,468,385)(177,592,470 - 177,593,538)
sequence
gaattcatttccactggttttaaatccactggatttagaatctgagtctg
tttcttactgcaaacgttgttttttgaacctgccaggatgaacaccagac
tctaggcaataatgaatctatgaagatactggacatatgtatggtgtcaa
atttcgaaacacccctcatctgaaacttccctcaactactagagttagag
actctttgactaatagagggactaaattctcaaatgacaaagcaatagta
cagtctttaccgtttttgttctgtcaatagctctccaatgtttgctttaa
gataattccacatcaatggataagactgaccacatctggaaaaacttcag
tcattctaaatttctgtttagttagttgtctagataattaactgaaaatg
gacacacctaacatgtctatctgggtgtggtggcacacacctttaatctc
aattcatggagggagaatgtgagcttgaggtacaagctgggttacataat
aagccccaagcagtttgcaacagggaggaagttctgttaaaaggaaggga
agagaaggtgaagggggcagggcaagaagataaataaaagcatagactgt
aataagcaatgataagcaagtggacactgtggaaaactgaatatgagata
gctgacaaacaccgtctgaaaagaacagccccatatggtctaatcttcca
aatgtttttcaagaggagaaaattgagattattggaggtaaggaaataag
tactggccacgacaagagactacctgtgcctaaataacgttcaaaagaag
tcatagataaactcaactatttccatcacacacacacacacacacacaca
cacacacacaaacacacacaaacacacacacacacacacacacacacaca
cacacacacacacacacacacacactaaaaccccaccttctgtctgactg
gcatggactgtatcagagtgtaaagcttctgcatcatggcatttctgaac
cagtttagcattcccaggtctcaggcagaaaccccaggtctgactgaccc
aacatgctggagtgctgactttcaaacccaggccctgctggcatgttata
tccttatgggcatgcaagcagcccaggtctactgactcttggcaat
gaattctttgtaagtgtggtggggagatggctaagggtgctggttactct
tctagcagaccagaatttgagtcccagcacgcccctgtcaggtggttcac
tactgcctgtaacgcgagctccagggtatgtgatgctctcttctggcttc
tgcaggtatcaaatgtgttcacacacacacacacacacacacacacacac
acacacacacaactcaataactgactttattgctccgttgtttctctctg
cagtttcggaggtcccttctgcagctcctatgcttccgcctgctgagatg
ccagcggcctgctaaaaacctcccagcggctgagagtgaaatgcacatca
ggcccatcgtgatgtcacagaaagatggggacaggccaaagaagaaagtg
acctttaactcttcctctatcatctttatcatcaccagtgatgagtccct
gtcagtcgaggacagtgacagaagcagcgcatctaaggtcgatgtcatcc
aagtgcgtcctctataagaatggaagacagagtcctatatcagccaccac
aatgttcctgtcaggagtgccccagagtccccatttggtgtaatagtgac
agaacctctgtggccctgtgggaaatccgaatcacccacatgttgtctgt
attcaagaagcgactgagcaagacatattattttaactcaatgggtgctt
tataaacttgagaacctcctggtggcacaagatgagcattctgggcgtca
tcgtctactatgccaggatttaatatttgaatgactgtaatttgccaaag
cacataatacattttgtttatcaaatgtattttcactataaaaaaaacaa
tcttatatacacgtgtactatgactggaacatctggagtacgttgcggtg
tgagtctgtttctgtgccatgttgtgtgtttgacaattaaatttattgaa
tagataataaatccatccctactttatctgaaactcaaaaggctggttgt
atggtgtggtagtaaactgccaggacttctaaatcagaaagccagttcag
aaagatttctgtaggaagcaatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177467241_177468385
seq2: B6Ng01-170C08.b_46_1191

seq1  GAATTCATTTCCACTGGTTTTAAATCCACTGGATTTAGAATCTGAGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCACTGGTTTTAAATCCACTGGATTTAGAATCTGAGTCTG  50

seq1  TTTCTTACTGCAAACGTTGTTTTTTGAACCTGCCAGGATGAACACCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACTGCAAACGTTGTTTTTTGAACCTGCCAGGATGAACACCAGAC  100

seq1  TCTAGGCAATAATGAATCTATGAAGATACTGGACATATGTATGGTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAATAATGAATCTATGAAGATACTGGACATATGTATGGTGTCAA  150

seq1  ATTTCGAAACACCCCTCATCTGAAACTTCCCTCAACTACTAGAGTTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAAACACCCCTCATCTGAAACTTCCCTCAACTACTAGAGTTAGAG  200

seq1  ACTCTTTGACTAATAGAGGGACTAAATTCTCAAATGACAAAGCAATAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGACTAATAGAGGGACTAAATTCTCAAATGACAAAGCAATAGTA  250

seq1  CAGTCTTTACCGTTTTTGTTCTGTCAATAGCTCTCCAATGTTTGCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTACCGTTTTTGTTCTGTCAATAGCTCTCCAATGTTTGCTTTAA  300

seq1  GATAATTCCACATCAATGGATAAGACTGACCACATCTGGAAAAACTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTCCACATCAATGGATAAGACTGACCACATCTGGAAAAACTTCAG  350

seq1  TCATTCTAAATTTCTGTTTAGTTAGTTGTCTAGATAATTAACTGAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAAATTTCTGTTTAGTTAGTTGTCTAGATAATTAACTGAAAATG  400

seq1  GACACACCTAACATGTCTATCTGGGTGTGGTGGCACACACCTTTAATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCTAACATGTCTATCTGGGTGTGGTGGCACACACCTTTAATCTC  450

seq1  AATTCATGGAGGGAGAATGTGAGCTTGAGGTACAAGCTGGGTTACATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGGAGGGAGAATGTGAGCTTGAGGTACAAGCTGGGTTACATAAT  500

seq1  AAGCCCCAAGCAGTTTGCAACAGGGAGGAAGTTCTGTTAAAAGGAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAAGCAGTTTGCAACAGGGAGGAAGTTCTGTTAAAAGGAAGGGA  550

seq1  AGAGAAGGTGAAGGGGGCAGGGCAAGAAGATAAATAAAAGCATAGACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGTGAAGGGGGCAGGGCAAGAAGATAAATAAAAGCATAGACTGT  600

seq1  AATAAGCAATGATAAGCAAGTGGACACTGTGGAAAACTGAATATGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAATGATAAGCAAGTGGACACTGTGGAAAACTGAATATGAGATA  650

seq1  GCTGACAAACACCGTCTGAAAAGAACAGCCCCAAATGGTCTAATCTTCCA  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGACAAACACCGTCTGAAAAGAACAGCCCCATATGGTCTAATCTTCCA  700

seq1  AATG-TTTTCAAGAGGAGAAAATTGAGATTATTGGAGGTAAGGAAATAAG  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTCAAGAGGAGAAAATTGAGATTATTGGAGGTAAGGAAATAAG  750

seq1  TACTGGCCACGACAAGAGACTACCTGTGCCTAAATAACGTTCAAAAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCCACGACAAGAGACTACCTGTGCCTAAATAACGTTCAAAAGAAG  800

seq1  TCATAGATAAACTCAACTA-TTCCATCACACACACACACACACACACACA  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCATAGATAAACTCAACTATTTCCATCACACACACACACACACACACACA  850

seq1  CACACACACAAACACACACAAACACACACACACACACACACACACACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAACACACACAAACACACACACACACACACACACACACACA  900

seq1  CACACACACACACACACACACACACTAAAACCCCACCTCCTGTCTGACTG  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACACACACACACACACACACACACTAAAACCCCACCTTCTGTCTGACTG  950

seq1  GCATGGACTGTATCAGAGTGTAAAGCTTCTGCAATCATGGCATTTCTGAA  998
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATGGACTGTATCAGAGTGTAAAGCTTCTGC-ATCATGGCATTTCTGAA  999

seq1  CCAGTTTAGCATTCCCAGTTCTCAGGCAGAAACCCCAAGTCTGAACTGAC  1048
      |||||||||||||||||| |||||||||||||||||| ||||| ||||||
seq2  CCAGTTTAGCATTCCCAGGTCTCAGGCAGAAACCCCAGGTCTG-ACTGAC  1048

seq1  TCAACATGCTGAGGGTCTGACATCCAAACCCAGGCTCTGCTTGTCAGTT-  1097
       ||||||||||  |  ||||| | ||||||||||| ||||| |   ||| 
seq2  CCAACATGCTGGAGTGCTGACTTTCAAACCCAGGCCCTGCTGGCATGTTA  1098

seq1  GATCCTTAGTGCCATGCAAGCAGCCCAGGTCCTAGCTGACTCT--GCAAT  1145
       |||||||  | |||||||||||||||||| ||| ||||||||  |||||
seq2  TATCCTTATGGGCATGCAAGCAGCCCAGGT-CTA-CTGACTCTTGGCAAT  1146

seq1: chr1_177592470_177593538
seq2: B6Ng01-170C08.g_69_1142 (reverse)

seq1  ACATTGCTTCCTACAG-AATCTTCTGGAACTGGCTTTCTTGATCT-GAAG  48
      |||||||||||||||| ||||||   |||||||||||| |||| | ||||
seq2  ACATTGCTTCCTACAGAAATCTTTCTGAACTGGCTTTC-TGATTTAGAAG  49

seq1  TCCTGGCAGCTATACTA-CACACATGACAA-CAGCC-TTTGGGTTTCAGA  95
      ||||||||| | ||||| |||||   |||| ||||| |||| ||||||||
seq2  TCCTGGCAG-TTTACTACCACACCATACAACCAGCCTTTTGAGTTTCAGA  98

seq1  TAAAAGTAGGGATTGATTTATTATCTCTTCAATAAATTTAATTGGTCAAA  145
      | ||||||||||| |||||||||||| |||||||||||||||| ||||||
seq2  T-AAAGTAGGGATGGATTTATTATCTATTCAATAAATTTAATT-GTCAAA  146

seq1  CACACAACATGGCACAGAACAGGACTCAACACCGCAACGTACTCCAGATG  195
      |||||||||||||||||||   ||||| ||||||||||||||||||||||
seq2  CACACAACATGGCACAGAAACAGACTC-ACACCGCAACGTACTCCAGATG  195

seq1  TTCCAGTCATTGTACACGTGTATATGAGATTGTTATTTTTATAGTG-AAA  244
      |||||||||| |||||||||||||| |||||||| ||||||||||| |||
seq2  TTCCAGTCATAGTACACGTGTATATAAGATTGTTTTTTTTATAGTGAAAA  245

seq1  TACATTTGATAAACAAAATGTATTATGTGCTTTGGCAAA-TACAGTCATT  293
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACATTTGATAAACAAAATGTATTATGTGCTTTGGCAAATTACAGTCATT  295

seq1  CAAATATTAAATCCTGGCATAGTAGACGATGACG-CCAG-ATGCTCATCT  341
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  CAAATATTAAATCCTGGCATAGTAGACGATGACGCCCAGAATGCTCATCT  345

seq1  TGTGCCACCAGGAGGTTCTCAAG-TTATAAAGCACCCATTGAGTTAAAAT  390
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGCCACCAGGAGGTTCTCAAGTTTATAAAGCACCCATTGAGTTAAAAT  395

seq1  AATTTGTCTTGCTCAGTCGCTTCTTGAATACAGACAACATGTGGGTGATT  440
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCTTGCTCAGTCGCTTCTTGAATACAGACAACATGTGGGTGATT  445

seq1  CGGATTTCCCACAGGGCCACAGAGGTTCTGTCACTATTACACCAAATGGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCCCACAGGGCCACAGAGGTTCTGTCACTATTACACCAAATGGG  495

seq1  GACTCTGGGGCACTCCTGACAGGAACATTGTGGTGGCTGATATAGGACTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGGGCACTCCTGACAGGAACATTGTGGTGGCTGATATAGGACTC  545

seq1  TGTCTTCCATTCTTATAGAGGACGCACTTGGATGACATCGACCTTAGATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCATTCTTATAGAGGACGCACTTGGATGACATCGACCTTAGATG  595

seq1  CGCTGCTTCTGTCACTGTCCTCGACTGACAGGGACTCATCACTGGTGATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTTCTGTCACTGTCCTCGACTGACAGGGACTCATCACTGGTGATG  645

seq1  ATAAAGATGATAGAGGAAGAGTTAAAGGTCACTTTCTTCTTTGGCCTGTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGATAGAGGAAGAGTTAAAGGTCACTTTCTTCTTTGGCCTGTC  695

seq1  CCCATCTTTCTGTGACATCACGATGGGCCTGATGTGCATTTCACTCTCAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTCTGTGACATCACGATGGGCCTGATGTGCATTTCACTCTCAG  745

seq1  CCGCTGGGAGGTTTTTAGCAGGCCGCTGGCATCTCAGCAGGCGGAAGCAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGGAGGTTTTTAGCAGGCCGCTGGCATCTCAGCAGGCGGAAGCAT  795

seq1  AGGAGCTGCAGAAGGGACCTCCGAAACTGCAGAGAGAAACAACGGAGCAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCAGAAGGGACCTCCGAAACTGCAGAGAGAAACAACGGAGCAA  845

seq1  TAAAGTCAGTTATTGAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAGTTATTGAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  895

seq1  TGTGTGTGTGAACACATTTGATACCTGCAGAAGCCAGAAGAGAGCATCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGAACACATTTGATACCTGCAGAAGCCAGAAGAGAGCATCAC  945

seq1  ATACCCTGGAGCTCGCGTTACAGGCAGTAGTGAACCACCTGACAGGGGCG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGGAGCTCGCGTTACAGGCAGTAGTGAACCACCTGACAGGGGCG  995

seq1  TGCTGGGACTCAAATTCTGGTCTGCTAGAAGAGTAACCAGCACCCTTAGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGACTCAAATTCTGGTCTGCTAGAAGAGTAACCAGCACCCTTAGC  1045

seq1  CATCTCCCCACCACACTTACAAAGAATTC  1069
      |||||||||||||||||||||||||||||
seq2  CATCTCCCCACCACACTTACAAAGAATTC  1074