BAC Information

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BAC

Clone NameB6Ng01-170C19
Chromosome1 (Build37)
Map Location 17,136,940 - 17,137,984
singlet/doubletsinglet
Overlap geneGdap1
Upstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
Downstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C19.bB6Ng01-170C19.g
ACCDH960954DH960955
length1,2771,041
definitionDH960954|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C19, 5' end.DH960955|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgaagacaattcagaatttaaaactaattcagtaaataaataga
aatagtgaagagaaataagctgaaatgaaaacttgattagcccaatttga
agactcagagggacagctttctacaagaatggctcaagtagaagaaatgg
tggggtatgaagataaagtagaggatttagaaaaacaaacaagaaataca
caataacaacaccacatgcagaaactatgggacaccacaaaaaggccaaa
gtttctaattataagcacagatgaaggagaagaatcccaggtcagttgca
tagaccaggttttcaaaaaaatcatagaagagaacaccccgaccaaggag
acaaacccagttagatataagaagcacaaaacaccaacttgacaggatca
gaaaagaacctctccacagcatatcacggtccaaacactagatacccaga
acaaagtgtgactactgaaggctgcaagaaaaaaagacaagtcacacagg
aaggacagtccctctgaataatagtttctcaatgaaaagtttgagcatag
agtaattacttcaagttctaaaagaccatggatgttaacccagactactg
taccaagtaaaactcaggtatcgcggagggaacaaaaggaatttccatga
tctaaacggactaaaagaaaatacaccaccaaaccagcacgtggagaatc
ctggaggcagtatttcagattgaccaaaagaataagcacagacgagagac
taaagaaaataaatgaactaataacgactgaaacataaaataaacacaag
acaggaccaagaacacaaacaaaaacagctaacaagctaaatgcctatga
tcaacacacactttaagtagtaatggtccccactacttgtcaaagacaca
ggtcagctaaaaggattaaaacgcgcgtccacctttctcctgtctacaag
agattgttcttagctctgaaatgagcacctccttaaagagaaaggatgga
caaaagtatcatgagtaaatgggaccagaagcacgaagctgcactgtcct
tatattgaacaaataagacttcaaccaaaaactggtgaaagagataagaa
ttacatttgtaatcaggaaacaattaactacaagaactttgcatcctaaa
caatacatgcaccttgacttctttaaaaacctaatctatctgaaggaaga
accatgtgctaagacctctagctcagttataacggggattctcaaccccc
cactttttctcgcgacggggttgcaga
gaattctgggttattaaattaagaatgatggcacctctcctcccaaataa
aaagactgcaagtcccttgtctatttcccccatgaggtctaatatccatt
ttcctcctggataccttcgacactctttggcccattaatttccttccatg
gctcccttaattttgggctgtatgctgagcttaactatccagttagcacc
agcacagcagaagagaagtagctggatcacttggagagcgatgtctggca
gagaattaaaatgaaagcctggaaccatgggctccactctcagttctgct
agtggtcagccttgccactgtgccaacctggccctgtcaccaagctgcag
ctgacctgaagaggctatcagcagaaagaagcatttgcacacggcaaaga
aaatgacaaatggtccttctctagcattgattcttctttttactcatttt
taagatgaaaatgatttacacaatatatactaagaatcaacatcatgaat
cttactttaaagctaataaatcgcccccacgaaagtgcaagtgaatttga
aagtttgatattaacattgcaactccgcttgagattctttcaaacatttg
cactggctgatttgaattttggcctacatttgtgtgcttatggaaatgga
aaaggtttttaaatcactaaaccagcataataaaatagagagagagaaag
cggggaagagggagagagaatgggggtgtctacattgaaaataaaccaag
aaattacaaatagccttagcattaccatccaggaaagtctgctcaagata
atcaatgatctgagtggcctcacagattatgttctccccgtggacaagga
ccggtacttctccagctgagttcaagcgcataaacaaaggctcattgtgc
tcactcagggcagacttacatcgtgttcctcgcacttcagtgccttttca
gccattaacaagcgcactgcagagtgacaggggttactgctgttcttccc
tttcctggatacagctaaacaaccctagcggccttcctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17136940_17137984
seq2: B6Ng01-170C19.g_69_1109 (reverse)

seq1  CTCAGGAAGGCAGCTAGGGTTGTTTAGCTGTATCCAGGGAAGGTGAGAAC  50
      ||||||||||| |||||||||||||||||||||||||| ||||  |||||
seq2  CTCAGGAAGGCCGCTAGGGTTGTTTAGCTGTATCCAGGAAAGGGAAGAAC  50

seq1  AGCAGTAACCCCTGTGCACTCTTGCAGGTGCGCTTGGTAATTGCTGAAAA  100
      ||||||||||||||| ||||| |||| ||||||||| |||| ||||||||
seq2  AGCAGTAACCCCTGT-CACTC-TGCA-GTGCGCTTGTTAATGGCTGAAAA  97

seq1  GGCACTGAAGTGCGAGGAACACGATGTAAGTCTGCCCCTGAGTGAGCACA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCACTGAAGTGCGAGGAACACGATGTAAGTCTG-CCCTGAGTGAGCACA  146

seq1  ATGAGCCTTGGTTTATGCGCTTGAACTCAGCTGGAGAAGTACCGGTCCTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTTTGTTTATGCGCTTGAACTCAGCTGGAGAAGTACCGGTCCTT  196

seq1  GTCCACGGGGAGAACATAATCTGTGAGGCCACTCAGATCATTGATTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGGGGAGAACATAATCTGTGAGGCCACTCAGATCATTGATTATCT  246

seq1  TGAGCAGACTTTCCTGGATGGTAATGCTAAGGCTATTTGTAATTTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGACTTTCCTGGATGGTAATGCTAAGGCTATTTGTAATTTCTTGG  296

seq1  TTTATTTTCAATGTAGACACCCCCATTCTCTCTCCCTCTTCCCCGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCAATGTAGACACCCCCATTCTCTCTCCCTCTTCCCCGCTTTC  346

seq1  TCTCTCTCTATTTTATTATGCTGGTTTAGTGATTTAAAAACCTTTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTATTTTATTATGCTGGTTTAGTGATTTAAAAACCTTTTCCAT  396

seq1  TTCCATAAGCACACAAATGTAGGCCAAAATTCAAATCAGCCAGTGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGCACACAAATGTAGGCCAAAATTCAAATCAGCCAGTGCAAAT  446

seq1  GTTTGAAAGAATCTCAAGCGGAGTTGCAATGTTAATATCAAACTTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGAATCTCAAGCGGAGTTGCAATGTTAATATCAAACTTTCAAA  496

seq1  TTCACTTGCACTTTCGTGGGGGCGATTTATTAGCTTTAAAGTAAGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGCACTTTCGTGGGGGCGATTTATTAGCTTTAAAGTAAGATTCA  546

seq1  TGATGTTGATTCTTAGTATATATTGTGTAAATCATTTTCATCTTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGATTCTTAGTATATATTGTGTAAATCATTTTCATCTTAAAAAT  596

seq1  GAGTAAAAAGAAGAATCAATGCTAGAGAAGGACCATTTGTCATTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAAGAAGAATCAATGCTAGAGAAGGACCATTTGTCATTTTCTTT  646

seq1  GCCGTGTGCAAATGCTTCTTTCTGCTGATAGCCTCTTCAGGTCAGCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTGCAAATGCTTCTTTCTGCTGATAGCCTCTTCAGGTCAGCTGCA  696

seq1  GCTTGGTGACAGGGCCAGGTTGGCACAGTGGCAAGGCTGACCACTAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGACAGGGCCAGGTTGGCACAGTGGCAAGGCTGACCACTAGCAG  746

seq1  AACTGAGAGTGGAGCCCATGGTTCCAGGCTTTCATTTTAATTCTCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGTGGAGCCCATGGTTCCAGGCTTTCATTTTAATTCTCTGCCA  796

seq1  GACATCGCTCTCCAAGTGATCCAGCTACTTCTCTTCTGCTGTGCTGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCGCTCTCCAAGTGATCCAGCTACTTCTCTTCTGCTGTGCTGGTGC  846

seq1  TAACTGGATAGTTAAGCTCAGCATACAGCCCAAAATTAAGGGAGCCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATAGTTAAGCTCAGCATACAGCCCAAAATTAAGGGAGCCATGG  896

seq1  AAGGAAATTAATGGGCCAAAGAGTGTCGAAGGTATCCAGGAGGAAAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATTAATGGGCCAAAGAGTGTCGAAGGTATCCAGGAGGAAAATGG  946

seq1  ATATTAGACCTCATGGGGGAAATAGACAAGGGACTTGCAGTCTTTTTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGACCTCATGGGGGAAATAGACAAGGGACTTGCAGTCTTTTTATT  996

seq1  TGGGAGGAGAGGTGCCATCATTCTTAATTTAATAACCCAGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGAGGTGCCATCATTCTTAATTTAATAACCCAGAATTC  1041