BAC Information

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BAC

Clone NameB6Ng01-170D07
Chromosome9 (Build37)1 (Build37)
Map Location 15,185,930 - 15,186,18421,408,138 - 21,408,966
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375
Downstream geneLOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170D07.bB6Ng01-170D07.g
ACCDH960978DH960979
length984830
definitionDH960978|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D07, 5' end.DH960979|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,185,930 - 15,186,184)(21,408,138 - 21,408,966)
sequence
gaattccagaaacatgacccgtaggttcagagaaagctaaacctgtaaca
tggccacaggctacatgactttccttagaaatttttgaggagttacaggc
agaaagggctgattggtcataacacaatcctaattatcatgtagcagaaa
gtgctaagcaagaaattttgagcaaggtaagtacctgtacttagagacac
tctcaagataaggacaggcagaaaagaggaagcagatgctggcgtggatg
tggagaaagaggaacactcctccattgctggtgggattgcaagctggtac
aagcactctggaaatcagtctgatggttcctcagaaaattggacatagta
ctaccagaagatgcagcaataccactcctggccacatgcccagaatgtgc
tccaacatataataaggatacatgctccactatgttcatgacagccttat
ttataatagccagaagttggaaataacccagatgtctctcaacagaggaa
tggatacagaaaatatggtaaatttacacaatggagtactactcagatat
taaaaacaatgaatttatgaaattcttaggcaaatgaatgcctctagagg
ataccatactgagtgagataacccaatcacaaaagaacacacatgatatg
cactcactgataagtgaatattagcccagaaactcaaaatacccaagata
caatttcaaaaacacatgaaactcaagaagaaggaagaccaaaattgtgg
acactttgatctttcttagaagggggaacaaaattcccatggaaggagtt
acagagacaaagtttgaaacagagactgaaaggaatgaccatccagagac
tgcttcacctggggatccatcccataaacaaccaccaaacccagacacta
ttgcagatgccaacaagatttttctgacaggaacctgatatattggtctc
ctgagaagctctgccagtgcctgcaaggtacaga
gaattctttgaggggctagaggtgtagttcaatggtaagagtgcttgctt
gtttgattatgcacatggccttgggttgcagcctgagtattgcaaacgaa
tatacaaaaagagagtttttttttttttttcagtttcccctcttgatttg
attatttcacttgattctttaaacagctggcttgacttgggatataggag
gttgcctgcagggaaacctaacaggcacgggaactcttgcatataaatct
taggagaaattaggaacatggtaaaattagtagcttctcttgcagctttt
cacaataatgagcatttggattggctttaattatctctagtagaaaaaac
tgttgaacagtaatctcattcagacttttgcttagtggtcctggggatca
attccaggaagttcgaacatgttaggcgggcactctgccactgagataat
tatgtgaaaagacccaaactttctgcatctataaaaccagcttatgcatg
aacgatggtcactgaggatctcattaagagggactctcacgctagatgta
gtaattctgtgacaagcacaacagtaagaagcataagaacaccacactgc
ctcgtgagtaaagcatgctcccaaatgcatgattcttcaaatgatactgc
acgttgccttggtgtgtatatctgagccataacctagtctagtgcaagtg
cacgcaaataagctatacaacttctccccccacccccaggctttagagct
ttattgtagaaaggcagggagaaagagagaagggagaaagagagagaggc
cggccatgaccacgggggggggggaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15185930_15186184
seq2: B6Ng01-170D07.b_148_322

seq1  GAAAGGGCTGATTGGTCATAACACAGTACCTAATTATCAGATGGGCAAGG  50
                                                      | 
seq2  ------------------------------------------------GA  2

seq1  AAGGGCTGATTGGTCATAACACAGTACCTAATTATCATATGGGCAGGAAG  100
      ||||||||||||||||||||||| | |||||||||||| |      | ||
seq2  AAGGGCTGATTGGTCATAACACAAT-CCTAATTATCATGT-----AGCAG  46

seq1  AAAGAGCAAGACTCGTGCTGAATCATGTAGCACTTGCAGAAAGTTCTGTG  150
      |||| || |                   ||||     ||||| || || |
seq2  AAAGTGCTA-------------------AGCA-----AGAAA-TTTTGAG  71

seq1  TAGGCTTATCCTTCACATAAGGTTAGGCATCTGCGTTCAGAGACACTCTC  200
                        |||| || | | |||   | ||||||||||||
seq2  -----------------CAAGG-TAAGTACCTGTACTTAGAGACACTCTC  103

seq1  CAAACAAAGCTAGGTAGAGAAAGGGAAGC-----CCCAC--------TGA  237
       | | || |  ||| ||| ||  ||||||     |   |         ||
seq2  AAGATAAGGACAGGCAGAAAAGAGGAAGCAGATGCTGGCGTGGATGTGGA  153

seq1  GAAAGAG----AATCCTCCATT  255
      |||||||    | |||||||||
seq2  GAAAGAGGAACACTCCTCCATT  175

seq1: chr1_21408138_21408966
seq2: B6Ng01-170D07.g_68_897

seq1  GAATTCTTTGAGGGGCTAGAGGTGTAGTTCAATGGTAAGAGTGCTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGGGGCTAGAGGTGTAGTTCAATGGTAAGAGTGCTTGCTT  50

seq1  GTTTGATTATGCACATGGCCTTGGGTTGCAGCCTGAGTATTGCAAACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTATGCACATGGCCTTGGGTTGCAGCCTGAGTATTGCAAACGAA  100

seq1  TATACAAAAAGAGAGTTTTTTTTTTTTTTTCAGTTTCCCCTCTTGATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAAAGAGAGTTTTTTTTTTTTTTTCAGTTTCCCCTCTTGATTTG  150

seq1  ATTATTTCACTTGATTCTTTAAACAGCTGGCTTGACTTGGGATATAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCACTTGATTCTTTAAACAGCTGGCTTGACTTGGGATATAGGAG  200

seq1  GTTGCCTGCAGGGAAACCTAACAGGCACGGGAACTCTTGCATATAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGCAGGGAAACCTAACAGGCACGGGAACTCTTGCATATAAATCT  250

seq1  TAGGAGAAATTAGGAACATGGTAAAATTAGTAGCTTCTCTTGCAGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAATTAGGAACATGGTAAAATTAGTAGCTTCTCTTGCAGCTTTT  300

seq1  CACAATAATGAGCATTTGGATTGGCTTTAATTATCTCTAGTAGAAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAATGAGCATTTGGATTGGCTTTAATTATCTCTAGTAGAAAAAAC  350

seq1  TGTTGAACAGTAATCTCATTCAGACTTTTGCTTAGTGGTCCTGGGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAACAGTAATCTCATTCAGACTTTTGCTTAGTGGTCCTGGGGATCA  400

seq1  ATTCCAGGAAGTTCGAACATGTTAGGCGGGCACTCTGCCACTGAGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGAAGTTCGAACATGTTAGGCGGGCACTCTGCCACTGAGATAAT  450

seq1  TATGTGAAAAGACCCAAACTTTCTGCATCTATAAAACCAGCTTATGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAAAGACCCAAACTTTCTGCATCTATAAAACCAGCTTATGCATG  500

seq1  AACGATGGTCACTGAGGATCTCATTAAGAGGGACTCTCACGCTAGATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGGTCACTGAGGATCTCATTAAGAGGGACTCTCACGCTAGATGTA  550

seq1  GTAATTCTGTGACAAGCACAACAGTAAGAAGCATAAGAACACCACACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTGTGACAAGCACAACAGTAAGAAGCATAAGAACACCACACTGC  600

seq1  CTCGTGAGTAAAGCATGCTCCCAAATGCATGATTCTTCAAATGATACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGAGTAAAGCATGCTCCCAAATGCATGATTCTTCAAATGATACTGC  650

seq1  ACGTTGCCTTGGTGTGTATATCTGAGCCATAACCTAGTCTAGTGCAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGCCTTGGTGTGTATATCTGAGCCATAACCTAGTCTAGTGCAAGTG  700

seq1  CACGCAAATAAGCTATACAACTTCTCCCCCCACCCCCAGGCTTTAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAAATAAGCTATACAACTTCTCCCCCCACCCCCAGGCTTTAGAGCT  750

seq1  TTATTGTAGAAAGGCAGGGAGAAAGAGAGAAGGGAGAAAGAGAGAGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAGAAAGGCAGGGAGAAAGAGAGAAGGGAGAAAGAGAGAGAGGC  800

seq1  CGGCCATGACCAC-GGGGGGGGGGAGGAGA  829
      ||||||||||||| ||||||||||||||||
seq2  CGGCCATGACCACGGGGGGGGGGGAGGAGA  830