BAC Information

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BAC

Clone NameB6Ng01-170F16
Chromosome1 (Build37)
Map Location 170,923,768 - 171,032,046
singlet/doubletdoublet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F16.bB6Ng01-170F16.g
ACCDH961089DH961090
length3671,011
definitionDH961089|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F16, 5' end.DH961090|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,031,679 - 171,032,046)(170,923,768 - 170,924,795)
sequence
gaattcttgtcctgggaaggtgctcgtttacagcctggcgaggcccaata
ctatttggacattttctgtccttctgggaagccattctgtcttgtatatc
tatgtaccttgggcctttatcatgctattgtttgggttcacaatgccctc
caaaaattcaagcatacactatcttagaccctggtcccatggtgttcgtg
atgaatggaatctacaaaccccaaccttacctatgcattaattttttgat
tatttatacctgagtgaactactgagaggtaatgaaaccgaagaaggtga
gagctagttggaggaggtaggaaaatattagttcctacctgtctctgtct
cctctcatctcctctcc
gaattcctgagccttgggtgcagagactgtgtgataggtgtgtcaggtgg
tactggactctcctcagccagatgttctttgcattttgaccagttgttgg
atttctgaaattatatctatctaaacaatacataaatgaacctttgatga
ggagtgagagctacattcacctgtgtataagggtaagaatagaaattgac
agtgcttggttctattccagggtctttgacacactagtcatagattcttg
ggtaggtttacaatagcaggtattaaatccctcctgttgagtgtgcctta
agtccaactgaaaaagagttggctactcctaagatacatataagtggcac
tattggaccagtggggaatttttgccaggccagtcattgtgggtaacaga
acatctgggttgcacactacacaatggaattctattgtggataccaacaa
gtgcttgttgactggagcctgatatagctgtctcctgagaggctctgcca
gtgcccaacaaatacagaggtggatgctcgaagccaaccattggactgag
cacagggtccccagtggaagagctagagaaaggactgaaggagctgaagg
ggtttgcagtgtgggtggacttcaccaggaaagggggtgaaaggataata
tagaagagggaagaggctatagagataacactaagggtgcttgaaaaagc
cacagagatgcatactatttttatggtatatatatatatacttatttatg
taataaattatataagtgtatgtgtatgtataatattgtacctcttgggg
tgataatacttctccaagggtaaaagactacttcagtgtatgtataggaa
aacttcctttcagttgttgtcacaaagttagagactcttaaattgacagg
aacatgcttatgttcttagtttcactcgtacttgaggtaacccctgttgc
tgagacacacactgcatcattggatttgaagaatgaatttaacggatttg
gctacttcgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_171031679_171032046
seq2: B6Ng01-170F16.b_47_413 (reverse)

seq1  GGAGAGGAGAGGAGAGGAGACAGAGACAGGTAGGAACAAATATTCTCCTA  50
      |||||||||| |||||||||||||||||||||||||| |||||| |||||
seq2  GGAGAGGAGATGAGAGGAGACAGAGACAGGTAGGAACTAATATTTTCCTA  50

seq1  CCTCCTCCAACTAGCTCTCACCTTCTTCGGTTTCATTACCTCTCAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCAACTAGCTCTCACCTTCTTCGGTTTCATTACCTCTCAGTAGT  100

seq1  TCACTCATGTATAAATAATCAAAAAATTAATGCATAGGTAAGGTTGGGGT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGGTATAAATAATCAAAAAATTAATGCATAGGTAAGGTTGGGGT  150

seq1  TTGTAGATTCCATTCATCTCTGAACACCATGGGACCAGGGTCTAAGATAG  200
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  TTGTAGATTCCATTCATCAC-GAACACCATGGGACCAGGGTCTAAGATAG  199

seq1  TCTATGCTTGAATTTTTGGAGGGCATTGTGAACCCAAACAATAGCATGAT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTTGAATTTTTGGAGGGCATTGTGAACCCAAACAATAGCATGAT  249

seq1  AAAGGCCCAAGGTACATAGATATACAAGACAGTATGGCTTCCCAGAATGA  300
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AAAGGCCCAAGGTACATAGATATACAAGACAGAATGGCTTCCCAGAAGGA  299

seq1  CAGAAAATGTACAAATAGTATTGGGCCTCGCCAGGGAATAGACGAGCACA  350
      |||||||||| ||||||||||||||||||||||||   || |||||||| 
seq2  CAGAAAATGTCCAAATAGTATTGGGCCTCGCCAGGCTGTAAACGAGCACC  349

seq1  TTCCCAGGACAAGAATTC  368
      ||||||||||||||||||
seq2  TTCCCAGGACAAGAATTC  367

seq1: chr1_170923768_170924795
seq2: B6Ng01-170F16.g_68_1078

seq1  GAATTCCTGAGCCTTGGGTGCAGAGACTGTGTGATAGGTGTGTCAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGCCTTGGGTGCAGAGACTGTGTGATAGGTGTGTCAGGTGG  50

seq1  TACTGGACTCTCCTCAGCCAGATGTTCTTTGCATTTTGACCAGTTGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGACTCTCCTCAGCCAGATGTTCTTTGCATTTTGACCAGTTGTTGG  100

seq1  ATTTCTGAAATTATATCTATCTAAACAATACATAAATGAACCTTTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAATTATATCTATCTAAACAATACATAAATGAACCTTTGATGA  150

seq1  GGAGTGAGAGCTACATTCACCTGTGTATAAGGGTAAGAATAGAAATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGAGCTACATTCACCTGTGTATAAGGGTAAGAATAGAAATTGAC  200

seq1  AGTGCTTGGTTCTATTCCAGGGTCTTTGACACACTAGTCATAGATTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGTTCTATTCCAGGGTCTTTGACACACTAGTCATAGATTCTTG  250

seq1  GGTAGGTTTACAATAGCAGGTATTAAATCCCTCCTGTTGAGTGTGCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTTACAATAGCAGGTATTAAATCCCTCCTGTTGAGTGTGCCTTA  300

seq1  AGTCCAACTGAAAAAGAGTTGGCTACTCCTAAGATACATATAAGTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAACTGAAAAAGAGTTGGCTACTCCTAAGATACATATAAGTGGCAC  350

seq1  TATTGGACCAGTGGGGAATTTTTGCCAGGCCAGTCATTGTGGGTAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACCAGTGGGGAATTTTTGCCAGGCCAGTCATTGTGGGTAACAGA  400

seq1  ACATCTGGGTTGCACACTACACAATGGAATTCTATTGTGGATACCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGTTGCACACTACACAATGGAATTCTATTGTGGATACCAACAA  450

seq1  GTGCTTGTTGACTGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTTGACTGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCA  500

seq1  GTGCCCAACAAATACAGAGGTGGATGCTCGAAGCCAACCATTGGACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAACAAATACAGAGGTGGATGCTCGAAGCCAACCATTGGACTGAG  550

seq1  CACAGGGTCCCCAGTGGAAGAGCTAGAGAAAGGACTGAAGGAGCTGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTCCCCAGTGGAAGAGCTAGAGAAAGGACTGAAGGAGCTGAAGG  600

seq1  GGTTTGCAGTGTGGGTGGACTTCACCAGGAAAGGGGGTGAAAGGATAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAGTGTGGGTGGACTTCACCAGGAAAGGGGGTGAAAGGATAATA  650

seq1  TAGAAGAGGGAAGAGGCTATAGAGATAACACTAAGGGTGCTTGAAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGGGAAGAGGCTATAGAGATAACACTAAGGGTGCTTGAAAAAGC  700

seq1  CACAGAGATGCATACTA-TTTTATGGTATATATATATATACTTATTTATG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACAGAGATGCATACTATTTTTATGGTATATATATATATACTTATTTATG  750

seq1  TAATAAATTATATAAGTGTATGTGTATGTATAATATTGTACCTCTTGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTATATAAGTGTATGTGTATGTATAATATTGTACCTCTTGGGG  800

seq1  TGATAATACTTCTCCCAAGGGTAAAAGACTAACTCCAGTGTTATGTATAG  849
      ||||||||||||| |||||||||||||||| ||| ||||| |||||||||
seq2  TGATAATACTTCT-CCAAGGGTAAAAGACT-ACTTCAGTG-TATGTATAG  847

seq1  GAAACCTCCCTTTCAGTTGTTGGTCACAGAAGTTCAGAGACTCTCAAAGT  899
      |||| || ||||||||||||| |||||| ||||| ||||||||| ||| |
seq2  GAAAACTTCCTTTCAGTTGTT-GTCACA-AAGTT-AGAGACTCTTAAATT  894

seq1  GACATGGAGCAATGCTATTGTTCTTAGGTTTCCTCTCAGTACTTGAAGGT  949
      |||| ||| | |||||  ||||||||| ||  |||   ||||||| ||||
seq2  GACA-GGAAC-ATGCTTATGTTCTTAGTTTCACTC---GTACTTG-AGGT  938

seq1  AAGCCCCTGTTGCTGAAGACACACACTGCAGCAATTGGACTTGGAGGAAT  999
      || |||||||||||| |||||||||||||| | |||||| || || ||||
seq2  AA-CCCCTGTTGCTG-AGACACACACTGCATC-ATTGGA-TTTGAAGAAT  984

seq1  GAATCTGAAACGGATCTGGCAGCTTCGTC  1028
      |||| |  ||||||| ||||  |||||||
seq2  GAATTT--AACGGATTTGGCTACTTCGTC  1011