BAC Information

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BAC

Clone NameB6Ng01-170G09
Chromosome1 (Build37)
Map Location 68,299,298 - 68,402,789
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170G09.bB6Ng01-170G09.g
ACCDH961119DH961120
length1,1061,006
definitionDH961119|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G09, 5' end.DH961120|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,299,298 - 68,300,402)(68,401,773 - 68,402,789)
sequence
gaattcacaacttgatatccaaaggtttataaatatttgcaaatacccag
gaaacgaaaactcaggtctgcagtgtgaccaaaccttaatacttttgtaa
taaataaatcattattttacgttatttgatgttttagaaataatgtttca
ctgaattgtcaaggctggtctcaaactttttagctcaagtaattcccctg
gctcaaactcacaagtttgaggttacaggtgaggggccaaatctactcaa
tcttgaaactggcctccatcttgaaagagagaaagacagaaagaaagaac
gaacgaatgaacgaacgaacaaacaaaagaaagaaaggcaaacagggaga
gagagagagagagagagagagagagagagagagagagagagagaagaaag
cctgaaaattttacccaaagctgaacccaaactgcacccaagtaccagga
aggaccccaaggcttttgcttggccggagtgactccttatagctaagtta
atcaaagcaagttaatcaaagcaagttaatcaaagattagtctgcttgtt
tcaggtgtactttcagactgcgtggtcattgtacagtcttgctgcagagc
acccacctgtgggcttacaatggacattcaataggatgcttgtcaggttg
gacacccctcacttactcccattttcctataaaaccttgccctgctactt
caccaaaaccatcctgtcgctcgtctgtaagaccaaattccagtgtgtaa
taaagagagcctaatgggattacatcagagttggctccttggtggtcttt
tggcatgcacaaaaggtttctagcacaacacagggtatataccaccatac
cagtcatctaattaagtagggaaagcattgagcatttcaaaatgtaaaaa
ttttaaatttctatcctacctataacatgttttgtaaaaaatccatgccc
ccgtatcacttagaaaatacaccagtactatgtaaaagcaaattatgcaa
tagttaatttttaaattaccacctaccagaacactaaaactaccaatatt
agccactaacccaatattggtatcggttagaaaatgtatatcctccattt
taataa
gaattcaatttttgtttttattggggagatactgataaaatacgtcttct
atcagatatggtaactgttgggagtggtttttttctcaatggcttccctg
tcaatcaaatttgcatatctgattccattgaatgtgttcttgaatgactc
tccattctaaggttctagttactacgattcatatgaaaagtaatctaact
tccaatattttactatttaatttaattacatttaatggcatgccagcact
tcaagagctagttacatctcctctcaagtattttagtggacttagtgaaa
cagctcagagaacctacttatagggggccaatctaataaaatatgtgaat
aaaggtggaaatgaacaaagttaaaagttgagttattgatttcaggcact
gattattttgtgtgtctacatcattacaattatcagtaaccaggacagcc
agggctatacagagaaaccctgtctcgaaaaaccaaaaataaataaataa
atgaataaataaaaataaattatcagtacattttgacgttaccaatatta
agtaactaatactgaataatcaacaaaaatcattaaacaaatatattata
tgctggtcttcaccccatcctgtatcagctttgacacatccaaggggatg
ctttctccctaaaaaaaaagcctaaacaataggaagaatagtctctgaaa
gctgtctgtttagaaaacttacttgttacattcgttctttctggtttctt
ctttatcagacaaacacagaagctagtaaaatatagtgtgtgttcactaa
attttcattgatatttaaggaacataaaattcttggaaacaaaaagtgtt
atttttcatattgaagattacatattgaacttacataaatatcagttgaa
gaataggttttattcttttaaatgcataattcattatattattattatat
tattattatatttgatgtgaaagagcctttattctgattggataaatcac
aggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68299298_68300402
seq2: B6Ng01-170G09.b_47_1152

seq1  GAATTCACAACTTGATATCCAAAGGTTTATAAATATTTGCAAATACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTTGATATCCAAAGGTTTATAAATATTTGCAAATACCCAG  50

seq1  GAAACGAAAACTCAGGTCTGCAGTGTGACCAAACCTTAATACTTTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGAAAACTCAGGTCTGCAGTGTGACCAAACCTTAATACTTTTGTAA  100

seq1  TAAATAAATCATTATTTTACGTTATTTGATGTTTTAGAAATAATGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCATTATTTTACGTTATTTGATGTTTTAGAAATAATGTTTCA  150

seq1  CTGAATTGTCAAGGCTGGTCTCAAACTTTTTAGCTCAAGTAATTCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGTCAAGGCTGGTCTCAAACTTTTTAGCTCAAGTAATTCCCCTG  200

seq1  GCTCAAACTCACAAGTTTGAGGTTACAGGTGAGGGGCCAAATCTACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAACTCACAAGTTTGAGGTTACAGGTGAGGGGCCAAATCTACTCAA  250

seq1  TCTTGAAACTGGCCTCCATCTTGAAAGAGAGAAAGACAGAAAGAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAACTGGCCTCCATCTTGAAAGAGAGAAAGACAGAAAGAAAGAAC  300

seq1  GAACGAATGAACGAACGAACAAACAAAAGAAAGAAAGGCAAACAGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAATGAACGAACGAACAAACAAAAGAAAGAAAGGCAAACAGGGAGA  350

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAG  400

seq1  CCTGAAAATTTTACCCAAAGCTGAACCCAAACTGCACCCAAGTACCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATTTTACCCAAAGCTGAACCCAAACTGCACCCAAGTACCAGGA  450

seq1  AGGACCCCAAGGCTTTTGCTTGGCCGGAGTGACTCCTTATAGCTAAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCCAAGGCTTTTGCTTGGCCGGAGTGACTCCTTATAGCTAAGTTA  500

seq1  ATCAAAGCAAGTTAATCAAAGCAAGTTAATCAAAGATTAGTCTGCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAAGTTAATCAAAGCAAGTTAATCAAAGATTAGTCTGCTTGTT  550

seq1  TCAGGTGTACTTTCAGACTGCGTGGTCATTGTACAGTCTTGCTGCAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTACTTTCAGACTGCGTGGTCATTGTACAGTCTTGCTGCAGAGC  600

seq1  ACCCACCTGTGGGCTTACAATGGACATTCAATAGGATGCTTGTCAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTGTGGGCTTACAATGGACATTCAATAGGATGCTTGTCAGGTTG  650

seq1  GACACCCCTCACTTACTCCCATTTTCCTATAAAACCTTGCCCTGCTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCCTCACTTACTCCCATTTTCCTATAAAACCTTGCCCTGCTACTT  700

seq1  CACCAAAACCATCCTGTCGCTCGTCTGTAAGACCAAATTCCAGTGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAACCATCCTGTCGCTCGTCTGTAAGACCAAATTCCAGTGTGTAA  750

seq1  TAAAGAGAGCCTAATGGGATTACATCAGAGTTGGCTCCTTGGTGGTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGCCTAATGGGATTACATCAGAGTTGGCTCCTTGGTGGTCTTT  800

seq1  TGGCATGCACAAAAGGTTTCTAGCACAACACA-GGTATATACCACCATAC  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCATGCACAAAAGGTTTCTAGCACAACACAGGGTATATACCACCATAC  850

seq1  CAGTCATCTAATTAAGTAGGGAAAGCATTGAGCATTTCAAAATGTAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTAATTAAGTAGGGAAAGCATTGAGCATTTCAAAATGTAAAAA  900

seq1  TTTTAAATTTCTAT-CTACCTATAACATGTTTTGTAAAAAATCAATGATA  948
      |||||||||||||| |||||||||||||||||||||||||||| |||   
seq2  TTTTAAATTTCTATCCTACCTATAACATGTTTTGTAAAAAATCCATG-CC  949

seq1  AACATATCACTTAGAAAATACA-CAGTACTATGTAAAAGCAAATTATGCA  997
        | |||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCGTATCACTTAGAAAATACACCAGTACTATGTAAAAGCAAATTATGCA  999

seq1  ATAGTTAATTTTTAAATTAACAACTACAAGAACACTAAAACTACCAATAT  1047
      ||||||||||||||||||| || |||| ||||||||||||||||||||||
seq2  ATAGTTAATTTTTAAATTACCACCTACCAGAACACTAAAACTACCAATAT  1049

seq1  TAAGCACTAACCCATATA-TGTAATCAGTTAGAAAAATGTTATAATCT-C  1095
      ||  |||||||||| ||| ||  ||| ||||| |||||| ||||  || |
seq2  TAGCCACTAACCCA-ATATTGGTATCGGTTAG-AAAATG-TATATCCTCC  1096

seq1  ATTTTAATAA  1105
      ||||||||||
seq2  ATTTTAATAA  1106

seq1: chr1_68401773_68402789
seq2: B6Ng01-170G09.g_65_1070 (reverse)

seq1  AATCCTGTTGATTTTATCCAATCAGAATAAAGGCTCTTTTCACATTCAAA  50
      ||||||| ||| |||||||||||||||||||||||| ||||||||  || 
seq2  AATCCTG-TGA-TTTATCCAATCAGAATAAAGGCTC-TTTCACATCAAAT  47

seq1  ATAATAATAATAATAATAATAATAATAATAATGAATTAATGCATTTTAAA  100
      |||||||||||    ||||||||||| |||||||||| ||||| ||||||
seq2  ATAATAATAAT----ATAATAATAAT-ATAATGAATT-ATGCA-TTTAAA  90

seq1  AGAATAAAAACCTATTCTTCAACTGATATTTATGTAAGTTCAATATGTAA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAT-AAAACCTATTCTTCAACTGATATTTATGTAAGTTCAATATGTAA  139

seq1  TCTTCAATATGAAAAATAACACTTTTTGTTTCCAAGAATTTTATGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATATGAAAAATAACACTTTTTGTTTCCAAGAATTTTATGTTCCT  189

seq1  TAAATATCAATGAAAATTTAGTGAACACACACTATATTTTACTAGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCAATGAAAATTTAGTGAACACACACTATATTTTACTAGCTTCT  239

seq1  GTGTTTGTCTGATAAAGAAGAAACCAGAAAGAACGAATGTAACAAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTCTGATAAAGAAGAAACCAGAAAGAACGAATGTAACAAGTAAG  289

seq1  TTTTCTAAACAGACAGCTTTCAGAGACTATTCTTCCTATTGTTTAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAACAGACAGCTTTCAGAGACTATTCTTCCTATTGTTTAGGCTT  339

seq1  TTTTTTTAGGGAGAAAGCATCCCCTTGGATGTGTCAAAGCTGATACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGGGAGAAAGCATCCCCTTGGATGTGTCAAAGCTGATACAGGA  389

seq1  TGGGGTGAAGACCAGCATATAATATATTTGTTTAATGATTTTTGTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGAAGACCAGCATATAATATATTTGTTTAATGATTTTTGTTGATT  439

seq1  ATTCAGTATTAGTTACTTAATATTGGTAACGTCAAAATGTACTGATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTATTAGTTACTTAATATTGGTAACGTCAAAATGTACTGATAATT  489

seq1  TATTTTTATTTATTCATTTATTTATTTATTTTTGGTTTTTCGAGACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTATTCATTTATTTATTTATTTTTGGTTTTTCGAGACAGGG  539

seq1  TTTCTCTGTATAGCCCTGGCTGTCCTGGTTACTGATAATTGTAATGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTGTCCTGGTTACTGATAATTGTAATGATGT  589

seq1  AGACACACAAAATAATCAGTGCCTGAAATCAATAACTCAACTTTTAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAAAATAATCAGTGCCTGAAATCAATAACTCAACTTTTAACTT  639

seq1  TGTTCATTTCCACCTTTATTCACATATTTTATTAGATTGGCCCCCTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTCCACCTTTATTCACATATTTTATTAGATTGGCCCCCTATAA  689

seq1  GTAGGTTCTCTGAGCTGTTTCACTAAGTCCACTAAAATACTTGAGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTCTCTGAGCTGTTTCACTAAGTCCACTAAAATACTTGAGAGGAG  739

seq1  ATGTAACTAGCTCTTGAAGTGCTGGCATGCCATTAAATGTAATTAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTAGCTCTTGAAGTGCTGGCATGCCATTAAATGTAATTAAATTA  789

seq1  AATAGTAAAATATTGGAAGTTAGATTACTTTTCATATGAATCGTAGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAAATATTGGAAGTTAGATTACTTTTCATATGAATCGTAGTAAC  839

seq1  TAGAACCTTAGAATGGAGAGTCATTCAAGAACACATTCAATGGAATCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTAGAATGGAGAGTCATTCAAGAACACATTCAATGGAATCAGA  889

seq1  TATGCAAATTTGATTGACAGGGAAGCCATTGAGAAAAAAACCACTCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAATTTGATTGACAGGGAAGCCATTGAGAAAAAAACCACTCCCAA  939

seq1  CAGTTACCATATCTGATAGAAGACGTATTTTATCAGTATCTCCCCAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCATATCTGATAGAAGACGTATTTTATCAGTATCTCCCCAATAA  989

seq1  AAACAAAAATTGAATTC  1017
      |||||||||||||||||
seq2  AAACAAAAATTGAATTC  1006