BAC Information

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BAC

Clone NameB6Ng01-170K03
Chromosome1 (Build37)
Map Location 100,211,106 - 100,212,185
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170K03.bB6Ng01-170K03.g
ACCDH961295DH961296
length1,2481,061
definitionDH961295|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K03, 5' end.DH961296|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccattcacagcaactactgaaccattgttgggaattggactgcat
attgtaagtcatcaataaattcctttacgatatagagactatccataagt
tctgtgactctagagagccccgactaatataagacccaacaaagaaagag
aacttcagaccaatttcccttatgaatgtcaatgcaaaaatagtcaataa
aatcctttcaaactgaatccaagaacacatcaaaacgatcatccattatg
atcaagtaagcttcatcccagggatgcagggatggttcaatatagggaaa
tccatcaacgtaattcactagaaaaacaaactcaaagacaaaaaacacat
tatcatctcgttagatgctgagaattcatttgacaaaatcaaacacccat
tcatgacaaacatcttggaaagatcaggaattcaaggcccatacataaac
ataataaaagcaatatacaacaaaccagtagccaacatcaaactaaatgg
agagaaacttaaagcaatcacactaaaatcagtgactagacaaagttgct
cactttctacttacctattcaatatagtacttgaagtcctaaccagagca
attagacaacaaaaggaggtcaggggaatataaattggaaaggaagaagg
aaaaatatcactatttgcagatgatatgacagtatatataagtgacccta
aaaattccaccagagaactcctaaacctgataaacagcttcagtgcagta
gctggatataaaattaacacgaacaaatcagtggcctttttctatacaaa
ggataaacaggatgagaaagaaattagagaaacaacacccttcacaatag
tcacaaacaatataaaaatactttggtgtgactctaaggaagtgaaatat
ctgtgtgatgagaacttcaagtctttgacgcacgaaatcaaagaggatct
gagaaagatggaaagatctccaatgctcatggattggcagattatatagt
aaaatggcttttcttgacaaaagcaatctacagattgaatgcatcccatc
aaaattccactcaattcttcacaggagttagaagggcattgcaattcatc
tgaataacaaaaaacctaggcgcaactattttcaggtgataaagacctct
ggtgtatcaccatgactcactctagctgtactacgagcatgcataaaaaa
acctgccagtactgtatcaagggatagatttagagactgaaaaatgag
gaattccaggagatttttttattgatatcctgagtctaacttagaaccct
gcctcatatatggcaatagctgctatcattcccaccttcttcaccttctt
tccttcaaaaactaaagcgaccttgggtctcaatgaggtaatctggcatc
tttccataacatggaatcagaatggagagtgggaagaaaaggagatggtt
tactgagggtgacttcagagaactcatgtctagccacagagcaagcttga
ttaaagactttctgctgcaaaaggagggaatctgaagtctttcttcttca
aattcccaaatgaattatattatattaattaattatagtattatattata
ctatattatatttctgtctttatatttgttttacaagataggattttata
taacccaggttagtcttgaacttcatatgtagctatggatgtacttgaat
tcctgatcctcactgcctctagttaaattcttgtgttcaaagggtacacc
tcaaagcctgactttggctttctatatttctatatttcagacaaatgttt
ctgagatttttttagaactgaggacattcatacatttgtatacattgcat
atttatctgaaagttattattaagtattctatatcacaaaacctatggaa
acttgaaatagatcgaagaggatggtagaaattattcttgcttataaatt
aaattagaactaaatatatatttgtgctgtaatttttgtttttatattct
ttcttctcttatggaaaaaatgagagcattttcccattttattcttatct
ccttgtagaaagctcaagtccaagtggatcaaggacctacacataaaatc
agatacactgaatctaatagaagagaaagtggggaacagccttcgacaca
tgggcacaggggaaaattttctgaacacaataccaatggcttatgctcct
agatcagaattacaatgggatatcataaaatgaaagctctgtaaggcaaa
gatgctgtcatagacaaacgcgcctatgatgggaaagaatttttactacc
ttctactatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100211106_100212185
seq2: B6Ng01-170K03.g_69_1129

seq1  GAATTCCAGGAGATTTTTTTATTGATATCCTGAGTCTAACTTAGAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGATTTTTTTATTGATATCCTGAGTCTAACTTAGAACCCT  50

seq1  GCCTCATATATGGCAATAGCTGCTATCATTCCCACCTTCTTCACCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATATATGGCAATAGCTGCTATCATTCCCACCTTCTTCACCTTCTT  100

seq1  TCCTTCAAAAACTAAAGCGACCTTGGGTCTCAATGAGGTAATCTGGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAAAACTAAAGCGACCTTGGGTCTCAATGAGGTAATCTGGCATC  150

seq1  TTTCCATAACATGGAATCAGAATGGAGAGTGGGAAGAAAAGGAGATGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAACATGGAATCAGAATGGAGAGTGGGAAGAAAAGGAGATGGTT  200

seq1  TACTGAGGGTGACTTCAGAGAACTCATGTCTAGCCACAGAGCAAGCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGGTGACTTCAGAGAACTCATGTCTAGCCACAGAGCAAGCTTGA  250

seq1  TTAAAGACTTTCTGCTGCAAAAGGAGGGAATCTGAAGTCTTTCTTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACTTTCTGCTGCAAAAGGAGGGAATCTGAAGTCTTTCTTCTTCA  300

seq1  AATTCCCAAATGAATTATATTATATTAATTAATTATAGTATTATATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAAATGAATTATATTATATTAATTAATTATAGTATTATATTATA  350

seq1  CTATATTATATTTCTGTCTTTATATTTGTTTTACAAGATAGGATTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTATATTTCTGTCTTTATATTTGTTTTACAAGATAGGATTTTATA  400

seq1  TAACCCAGGTTAGTCTTGAACTTCATATGTAGCTATGGATGTACTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGGTTAGTCTTGAACTTCATATGTAGCTATGGATGTACTTGAAT  450

seq1  TCCTGATCCTCACTGCCTCTAGTTAAATTCTTGTGTTCAAAGGGTACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATCCTCACTGCCTCTAGTTAAATTCTTGTGTTCAAAGGGTACACC  500

seq1  TCAAAGCCTGACTTTGGCTTTCTATATTTCTATATTTCAGACAAATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCTGACTTTGGCTTTCTATATTTCTATATTTCAGACAAATGTTT  550

seq1  CTGAGATTTTTTTAGAACTGAGGACATTCATACATTTGTATACATTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTTTTTAGAACTGAGGACATTCATACATTTGTATACATTGCAT  600

seq1  ATTTATCTGAAAGTTATTATTAAGTATTCTATATCACAAAACCTATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTGAAAGTTATTATTAAGTATTCTATATCACAAAACCTATGGAA  650

seq1  ACTTGAAATAGATCGAAGAGGATGGTAGAAATTATTCTTGCTTATAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAATAGATCGAAGAGGATGGTAGAAATTATTCTTGCTTATAAATT  700

seq1  AAATTAGAACTAAATATATATTTGTGCTGTAATTTTTGTTTTTATATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAACTAAATATATATTTGTGCTGTAATTTTTGTTTTTATATTCT  750

seq1  TTCTTCTCTTATGGAAAAAAATGAGAGCATTTTCCCATTTTAATTCTTAT  800
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TTCTTCTCTTATGG-AAAAAATGAGAGCATTTTCCCATTTT-ATTCTTAT  798

seq1  CTCCTTGTAGAAAGCTCAAGTCCAAGTGGATCAAGGACCTACACATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTAGAAAGCTCAAGTCCAAGTGGATCAAGGACCTACACATAAAA  848

seq1  TCAGATACACTGAATCTAATAGAAGAGAAAGTGGGGAACAGCCTCGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TCAGATACACTGAATCTAATAGAAGAGAAAGTGGGGAACAGCCTTCGACA  898

seq1  CATGGGCACAGGGGAAAATTTTCTGAACACAATACCAATGGCTTATGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCACAGGGGAAAATTTTCTGAACACAATACCAATGGCTTATGCTC  948

seq1  TAAGATCAAGAATTAACAAATGGGATATCATAAAATTGAAAAGCTTCTGT  1000
        ||||| |||||||   ||||||||||||||||||   ||||| |||||
seq2  CTAGATC-AGAATTA--CAATGGGATATCATAAAAT--GAAAGC-TCTGT  992

seq1  AAGGCAAAGGATGCTGTCAATAAGACAAAAACAGCAGCCTATAGATGGGA  1050
      |||||||| ||||||||||   |||||||  |    |||||| |||||||
seq2  AAGGCAAA-GATGCTGTCA--TAGACAAACGC----GCCTAT-GATGGGA  1034

seq1  AAAGATTTTTACTAACCCTACATACTATCA  1080
      ||  ||||||||||  ||| | ||||||||
seq2  AAGAATTTTTACTA--CCTTC-TACTATCA  1061