BAC Information

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BAC

Clone NameB6Ng01-170M01
Chromosome1 (Build37)
Map Location 77,299,941 - 77,402,165
singlet/doubletdoublet
Overlap geneEpha4
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneLOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170M01.bB6Ng01-170M01.g
ACCDH961385DH961386
length8361,102
definitionDH961385|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M01, 5' end.DH961386|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,401,336 - 77,402,165)(77,299,941 - 77,300,668)
sequence
gaattctcagggctctgggtaggatcccagcactatgatgatgatgatgg
aggtggtggtggtgatgatgatgatgtgtggttaaacccaggtgtggcgg
tacatccttataatcttagcactcaggaggcaggggcagaagcaggtaga
ttgcttgagtttaagggcagcctaatctatagagcaagttccaggacaac
tagggctatacagagaaactctgtctggaaaaaacaaacaaacaaacaaa
caaacaaacaaaaacccaaaaaacagaacatcaaacaaacaaaaccagta
cctttctagatggactggggatagacagatttgtgtagatatcgtgatgg
cactgagggtggtcccagcgaaggactactgggatgtaacaaaggaaggg
attgttctatgtaaagttggggtttttttctcaacattctcagtaatttt
gagcataccaaggtcaggatctcaagtcagtgctggagagcctcaatcaa
tgtttcttggatgctgggtaatctcacattttaactaagtttggggaggc
aagagtgaaggctgattttatattgttaaaggttatctgccattaattgg
aagtgcttaatctactaatgggaagttttccttttcagtataaccacagt
tttcagattaaatgttatgtattcatgatacaacttgtcaggggctggag
ggttggtggcacatgggcggtgtgagaagacctttttgatgcttgggaac
aattgggctaagggaccgattgggacattccattgccaagtgcctcatcg
agggaaacagagctgcaggcaggcaggcttacacgg
gaattcccagaacccacagaaaaatatgaatatggcaagagaaggctgta
gccacggcacagagcccaaaaccgggtggatgctagggagctccctggcc
agcccagctgaaagggcaagccccaggctcagagagagactctgccttaa
aactaaggaaggaagcaatgaaggagggcaaaggacttcccgtgcagccc
tgaacccattcgatctccatatcccacagaaaaaagccaagcatggtggg
cacacttgtaatttcaatgctgagaagcagaagcaaggagagttttgcct
caccagccagtcagtgtagcctaatgagcaaaccctaagtggaaatcagt
gccccagccctcaaacaaacaaacaaacaggaagatggtgcctaaagaac
agcacttgagttctacatttggcaaccacatgtacgggacacatgcacaa
atgtatacctgcccacacacaccaacataccacacacacactgcatacat
atacacacaaatatacaccatgcacacaaatgcatacacatatatagacc
tcatatacagacatacacagacataacaatacacacacacacaccacata
ccccacacacacatacacacacatacaaacacacacctcactcatataca
tctgacacatatacacaaacatacaaacacataccagacatccacttcat
acacacacacacaagaacacacatataccacgcacatacacttatacaca
ccacacaaaaacacatacacaccctgcatatatatacacaacatacacaa
acacacatatcacacacaccatacaaacacacatatacatacacaacaca
catacaagcacacacatacacacataccccaccaacacaatctatttgtc
aaagattttattcactgatctgtctcaataaatatctgacgtcctttcct
tgcttcagtcaaatttacaaagtctgcactcagttcagtatgtaaaagaa
tttctaaggctttcccatattgcttttgagcataaatgatttattttaat
cctctttttctctccagcagcaaatgaattctcagacttgccaccacgga
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77401336_77402165
seq2: B6Ng01-170M01.b_42_877 (reverse)

seq1  CCGTGTACGCCTGCCTGCCTGCAGCTCTGTTTCCCTCGATGAGGCACTTG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAAGCCTGCCTGCCTGCAGCTCTGTTTCCCTCGATGAGGCACTTG  50

seq1  GCAATGGAATGTCCCAATCGGTCCCTTAGCCCACTGGTTCCCAAGCATC-  99
      ||||||||||||||||||||||||||||||||| | ||||||||||||| 
seq2  GCAATGGAATGTCCCAATCGGTCCCTTAGCCCAATTGTTCCCAAGCATCA  100

seq1  AATAGGTCTTCTCACACCGCCCATGTGCCACC-ACCCTCCAGCCCCTGAC  148
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAGGTCTTCTCACACCGCCCATGTGCCACCAACCCTCCAGCCCCTGAC  150

seq1  AAGTTGTATCATGAATACATAACATTT-ATCTG-AAACTGTGGTTATACT  196
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  AAGTTGTATCATGAATACATAACATTTAATCTGAAAACTGTGGTTATACT  200

seq1  GAAA--GGAAACTTCCCATTAGTAGATTAAGCACTTCCAATTAATGGCAG  244
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAAACTTCCCATTAGTAGATTAAGCACTTCCAATTAATGGCAG  250

seq1  ATAACCTTTAACAATATAAAATCAGCCTTCACTCTTGCCTCCCCAAACTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTTAACAATATAAAATCAGCCTTCACTCTTGCCTCCCCAAACTT  300

seq1  AGTTAAAATGTGAGATTACCCAGCATCCAAGAAACATTGATTGAGGCTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAATGTGAGATTACCCAGCATCCAAGAAACATTGATTGAGGCTCT  350

seq1  CCAGCACTGACTTGAGATCCTGACCTTGGTATGCTCAAAATTACTGAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGACTTGAGATCCTGACCTTGGTATGCTCAAAATTACTGAGAA  400

seq1  TGTTGAGAAAAAAACCCCAACTTTACATAGAACAATCCCTTCCTTTGTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAAAAAAACCCCAACTTTACATAGAACAATCCCTTCCTTTGTTA  450

seq1  CATCCCAGTAGTCCTTCGCTGGGACCACCCTCAGTGCCATCACGATATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGTAGTCCTTCGCTGGGACCACCCTCAGTGCCATCACGATATCT  500

seq1  ACACAAATCTGTCTATCCCCAGTCCATCTAGAAAGGTACTGGTTTTGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATCTGTCTATCCCCAGTCCATCTAGAAAGGTACTGGTTTTGTTT  550

seq1  GTTTGATGTTCTGTTTTTTGGGTTTTTGTTTGTTTGTTTGTTTGTTTGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGTTCTGTTTTTTGGGTTTTTGTTTGTTTGTTTGTTTGTTTGTT  600

seq1  TGTTTTTTCCAGACAGAGTTTCTCTGTATAGCCCTAGTTGTCCTGGAACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCCAGACAGAGTTTCTCTGTATAGCCCTAGTTGTCCTGGAACT  650

seq1  TGCTCTATAGATTAGGCTGCCCTTAAACTCAAGCAATCTACCTGCTTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTATAGATTAGGCTGCCCTTAAACTCAAGCAATCTACCTGCTTCTG  700

seq1  CCCCTGCCTCCTGAGTGCTAAGATTATAAGGATGTACCGCCACACCTGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCCTGAGTGCTAAGATTATAAGGATGTACCGCCACACCTGGG  750

seq1  TTTAACCACACATCATCATCATCACCACCACCACCTCCATCATCATCATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCACACATCATCATCATCACCACCACCACCTCCATCATCATCATC  800

seq1  ATAGTGCTGGGATCCTACCCAGAGCCCTGAGAATTC  830
      ||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCTGGGATCCTACCCAGAGCCCTGAGAATTC  836

seq1: chr1_77299941_77300668
seq2: B6Ng01-170M01.g_445_1168

seq1  AGGAAGATGGTGCCTAAAGAACAGCACTTGAGTTCTACATTTGGCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGGTGCCTAAAGAACAGCACTTGAGTTCTACATTTGGCAACCA  50

seq1  CATGTACGGGACACATGCACAAATGTATACCTGCCCACACACACCAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACGGGACACATGCACAAATGTATACCTGCCCACACACACCAACAT  100

seq1  ACCACACACACACTGCATACATATACACACAAATATACACCATGCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACACACTGCATACATATACACACAAATATACACCATGCACACA  150

seq1  AATGCATACACATATATAGACCTCATATACAGACATACACAGACATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACACATATATAGACCTCATATACAGACATACACAGACATAACA  200

seq1  ATACACACACACACACCACATACCCCACACACACATACACACACATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACCACATACCCCACACACACATACACACACATACAA  250

seq1  ACACACACCTCACTCATATACATCTGACACATATACACAAACATACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCTCACTCATATACATCTGACACATATACACAAACATACAAAC  300

seq1  ACATACCAGACATCCACTTCATACACACACACACAAGAACACACATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCAGACATCCACTTCATACACACACACACAAGAACACACATATAC  350

seq1  CACGCACATACACTTATACACACCACACAAAAACACATACACACCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACATACACTTATACACACCACACAAAAACACATACACACCCTGCA  400

seq1  TATATATACACAACATACACAAACACACATATCACACACACCATACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACAACATACACAAACACACATATCACACACACCATACAAAC  450

seq1  ACACATATACATACACAACACACATACAAGCACACACATACACACATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATACATACACAACACACATACAAGCACACACATACACACATACC  500

seq1  CCACCAACACAATCTATTTGTCAAAGATTTTATTCACTGATCTGTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACACAATCTATTTGTCAAAGATTTTATTCACTGATCTGTCTCAA  550

seq1  TAAATATCTGACGTCCTTTCCTTGCTTCAGTCAAATTTACAAAGTCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTGACGTCCTTTCCTTGCTTCAGTCAAATTTACAAAGTCTGCA  600

seq1  CTCAGTTCAGTATGTAAAAGAATTTCTAAAGCTTTCCCATAATTTGCTTT  650
      ||||||||||||||||||||||||||||| |||||||||||  |||||||
seq2  CTCAGTTCAGTATGTAAAAGAATTTCTAAGGCTTTCCCATA--TTGCTTT  648

seq1  TGATCATAAATGATTTTATTTTAATCCCTCTTTTCTCTCCAAGCAGCAAA  700
      ||| ||||||||| |||||||||||||   |||||||||| |||||||||
seq2  TGAGCATAAATGA-TTTATTTTAATCCTCTTTTTCTCTCC-AGCAGCAAA  696

seq1  TGAATTCTCAGACTTTGCACCACGGAAT  728
      |||||||||||||||  |||||||||||
seq2  TGAATTCTCAGACTTGCCACCACGGAAT  724