BAC Information

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BAC

Clone NameB6Ng01-170P09
Chromosome1 (Build37)
Map Location 50,486,991 - 50,487,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041981, EG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P09.bB6Ng01-170P09.g
ACCDH961545DH961546
length1,2701,152
definitionDH961545|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P09, 5' end.DH961546|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagacccatacataaatataataaaatcaatacacatcaaacca
tcagccaatatcaagttaaatggagaaatccttgaagcagttccattaaa
atcagagaaaagacaatgatgccccttgtcacctaatctactcaatacag
tactcaaaactctagctagaacaataagacaacaaaaggaaatcaagagg
atacaaatattcaaagaagtcaagttatcactatttgcaaatgatatgat
attataaatacaaaactccaaaaattctaccatagaacttctgcatctga
taaacacctccagcaatgtggccggatataaaattaatacaaacaaacca
gtagcctccatttataaagattgtaaatgggctgagaaagaaattagaaa
aacaacaccctttactatagtcacaaataatataaaatatcttggaataa
ctctaaccaaacaagcaaaaaatctgaatgacaagaactttatgcctcta
aagaaagaagtcaaaaagaatatctcagaaaatggagtgatctaccatgc
tcatgaattggtaagattaatagtaaaaaacagccatgctaccaaaagca
atctacagattcaatgaactccccatcaaaatttcaactcaattttttaa
agatatagaaagagcacgaagcattctcaatttcatgtggaaaacaaaat
gtccaggatagcaaaaacagttcttaacaataaaagatcttctgagggaa
tcactgtctctgacttcaagccgtactactgagcaatagtgtttactgtc
ctattttgtagttctgttgtagaaaatatttaatcccaatctggtgtttc
tatcccacttttgaccatttcatacccagataaaagaaatgcatagcctt
aatatttacaataagccttaagaagcacaagagctggcagttgtctacac
tctatgctattagaatctgcttgtgtgtgatgaccctgagttattgctat
catcttccatctggcctgctctattccaatttctatctgctcattacagg
gccttttttcttttaccacaggtgtcttttttcctctctgcacttctttt
tcctctctcctcatggtctcttcaacccaagtctggagaaccaaatgcct
ccactatctcaattatttaaggctacatgcccatagcaattggtttacaa
ataaaataagtgggcctaacgctcagatggagaattcacttggtcgcgag
aaattcagagaactctccct
gaattctcagctgaggaatatcaaatggccaagaagcacctaaagaaatg
atcaaaatccttaggatcagggaaatgcaaatcaaaacaacattgagatt
ccaccttatacaagtcagaacggctaagatcaaaaactcagttgacagca
gatgctgatgaggatgtggagaaagaggagcactcctccattcttggtgg
aaatgcatgctggtgcatccactctggaaatcagtttggtggttcctcag
aaaattggacatagtattacctgaggacccagttatactactcctgggca
tatacccagaagatgctcaaacatgtaaaaaggactcatgctccactatg
ttcatagcaggagctggaaagaacctagatgtccttcaacagagaatgga
tacaaaaaatgtggtacattcacacaatgttgtactatcagctattaaaa
acaatgaattcatgaaatttttaatcaatagatagaactagaaaatatac
tcctgagtgagataacccaatcacaaaagaacacacatggtatgtactca
gtgataagtggataattgccccaaatctccaaataaccaatatacaattc
acagaccacatgaaactcaagaataaggaagaccaaagtgtggatgtttt
ggtccttcttagaaggtgaacaaaacacaggagaaaatatggagataaac
tgtacagcagaaactaaaggaaaggccaatctgaggctgtcccatctggg
gattcatcacatgtacatttaccaaacccagacattattggatgccaaga
agtgcatgataataggaacctgatatggctgtcttctgagagaccctgcc
agagtcttacaagtacagaggcagatgtttagcagccaatcattggactg
tgcatggggtctctaatagaggagctagagaaaggactgaaggagttgaa
agtgtttgcatccctataggagacacaatattaccaacccactctacatt
gctcctgggactcagtcatcaaccatgagtacacatgactcagctgcatt
atgtagcagagatagctatcatgcatcatggaaggaagagggcctggtct
atgaaaggcttgatagatgcccaagttagggatattgaggccagggagga
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50486991_50487964
seq2: B6Ng01-170P09.b_342_1316

seq1  TCTGATAAACACCTCCAGCAATGTGGCCGGATATAAAATTAATACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAACACCTCCAGCAATGTGGCCGGATATAAAATTAATACAAACA  50

seq1  AACCAGTAGCCTCCATTTATAAAGATTGTAAATGGGCTGAGAAAGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTAGCCTCCATTTATAAAGATTGTAAATGGGCTGAGAAAGAAATT  100

seq1  AGAAAAACAACACCCTTTACTATAGTCACAAATAATATAAAATATCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAACACCCTTTACTATAGTCACAAATAATATAAAATATCTTGG  150

seq1  AATAACTCTAACCAAACAAGCAAAAAATCTGAATGACAAGAACTTTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCTAACCAAACAAGCAAAAAATCTGAATGACAAGAACTTTATGC  200

seq1  CTCTAAAGAAAGAAGTCAAAAAGAATATCTCAGAAAATGGAGTGATCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGAAAGAAGTCAAAAAGAATATCTCAGAAAATGGAGTGATCTAC  250

seq1  CATGCTCATGAATTGGTAAGATTAATAGTAAAAAACAGCCATGCTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCATGAATTGGTAAGATTAATAGTAAAAAACAGCCATGCTACCAA  300

seq1  AAGCAATCTACAGATTCAATGAACTCCCCATCAAAATTTCAACTCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTACAGATTCAATGAACTCCCCATCAAAATTTCAACTCAATTT  350

seq1  TTTAAAGATATAGAAAGAGCACGAAGCATTCTCAATTTCATGTGGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATATAGAAAGAGCACGAAGCATTCTCAATTTCATGTGGAAAAC  400

seq1  AAAATGTCCAGGATAGCAAAAACAGTTCTTAACAATAAAAGATCTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCAGGATAGCAAAAACAGTTCTTAACAATAAAAGATCTTCTGA  450

seq1  GGGAATCACTGTCTCTGACTTCAAGCCGTACTACTGAGCAATAGTGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCACTGTCTCTGACTTCAAGCCGTACTACTGAGCAATAGTGTTTA  500

seq1  CTGTCCTATTTTGTAGTTCTGTTGTAGAAAATATTTAATCCCAATCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATTTTGTAGTTCTGTTGTAGAAAATATTTAATCCCAATCTGGT  550

seq1  GTTTCTATCCCACTTTTGACCATTTCATACCCAGATAAAAGAAATGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATCCCACTTTTGACCATTTCATACCCAGATAAAAGAAATGCATA  600

seq1  GCCTTAATATTTACAATAAGCCTTAAGAAGCACAAGAGCTGGCAGTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATATTTACAATAAGCCTTAAGAAGCACAAGAGCTGGCAGTTGTC  650

seq1  TACACTCTATGCTATTAGAATCTGCTTGTGTGTTGATGACCCTGAGTTAT  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACACTCTATGCTATTAGAATCTGCTTGTGTG-TGATGACCCTGAGTTAT  699

seq1  TGCTTATCATCTTCCATCTGGCCTGCTCTTAATTCCAATTTCTATCTGCT  750
      ||| |||||||||||||||||||||||||  |||||||||||||||||||
seq2  TGC-TATCATCTTCCATCTGGCCTGCTCT--ATTCCAATTTCTATCTGCT  746

seq1  CATTACCAGGCCTTTTTTCTTTTAACCCACA-GTGTC-TTTTTCCTCTCT  798
      ||||||  ||||||||||||||||  ||||| ||||| ||||||||||||
seq2  CATTACAGGGCCTTTTTTCTTTTA--CCACAGGTGTCTTTTTTCCTCTCT  794

seq1  GCACCTTCTTTT--CTCTCTCCTCATGGTCTCTTCAAACCCAAAGTCT-G  845
      ||| ||||||||  |||||||||||||||||||||||  || |||||| |
seq2  GCA-CTTCTTTTTCCTCTCTCCTCATGGTCTCTTCAA--CCCAAGTCTGG  841

seq1  AGAACCCAAATGCCTCACCTATCTCAATTATTTACAGCTACATG-CCATA  894
      |||| |||||||||||  ||||||||||||||||  |||||||| |||||
seq2  AGAA-CCAAATGCCTCCACTATCTCAATTATTTAAGGCTACATGCCCATA  890

seq1  GGCATTTGTGTTTAACAATTAGAAATAAGTTGGGTCTAACG-TCAGAT--  941
       ||| ||| |||| |||| || ||||||| |||| |||||| ||||||  
seq2  -GCAATTG-GTTT-ACAAATA-AAATAAG-TGGGCCTAACGCTCAGATGG  935

seq1  AGAA-TCACTTGGTC---AGAAATTCAG---ACTCTCTCT  974
      |||| ||||||||||   ||||||||||   |||||| ||
seq2  AGAATTCACTTGGTCGCGAGAAATTCAGAGAACTCTCCCT  975