BAC Information

Click to search

BAC

Clone NameB6Ng01-171A09
Chromosome1 (Build37)
Map Location 190,127,098 - 190,192,809
singlet/doubletdoublet
Overlap geneUsh2a
Upstream geneGpatch2, Esrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171A09.bB6Ng01-171A09.g
ACCGA000015GA000016
length1,0401,082
definitionB6Ng01-171A09.b B6Ng01-171A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,127,098 - 190,128,145)(190,191,713 - 190,192,809)
sequence
gaattcctatgcactgccttctgaataagagaagggaatgatctgagaat
actataaattaatgatttctacctgctactctcctctcagcacactgcta
gggtaaatttcagagatgcagctgttgactcaaagagtgtgcataactgt
gttttgggtacatatttacagactgccttcagccttcagaaaatgtttga
ctacagcagaatcctatggaaggctgcaccagcatatctgacccttaggt
tcttgtcaatagaaggaattgtctcttgttgtcttctctctgttgaggca
cataatgcattttgcagttcttagcccaccttgttcaaatgctttgaaag
ataataaatttggtctatagtcttgtgcttattgagataaatgagattat
ctccatatacaataatggaatctttatatttgaattgttcttatcacatc
atcatatcacaaagtatcatttactattttgttactctgtatttagctat
tgtgtgtaggtgcatgttttgtgtgtgaattaatagatgctacagcaagt
atgtacaggaaaacttgcagccatagcttcccagtttgcattacagggtt
catagtcactgaacctctgggagttgaaggttgaaggcaagtgagtttat
ttgcttgaccatcttgctgattgcccctctgtaactgtcgttttaaaagt
caggatagggcaatagagccaacagtcactgacgagcctccatgtggttt
actaatataatttcttaaggtaccttgaactttttttttttttttttttt
ttggtaaaagtgttgtcatctgctggagtggagttggatggtgatctatc
tttaaattctttgtacaactgagagtatgtttcaaatgcccagctgagaa
caatgtcttgtattaatgggaatcttttttagatcccttcctttttgtta
acacttcattaaactcttatttttcatgaagaaaaaacatgagaaagcta
gactatggtttctgtgatgatcatgtgtgtgagtattgat

gaattccacgctttaggtgggggtaagctcctggtgttctgcccatggct
gaggagctaatgacatttatggatattggagcagagagaaccactttcca
tggttggtggaggaacactgttaagttttcatatgcatgggtataaggat
gagggttaataggacttgtaggttataaagaatgattattaaggatgtaa
acttcttcaatgcaatgttacagaaatggagactttgagaaaggactacc
taaattttaattttaaaacttgttttaaaatatgcataactgaaaggctt
attgacatttattgtggtcacctaacttgaagacaatactactaaccgtt
aacattgtgtgctaagataaaagagaggggtggggtgactctgttgtcta
tactttgatttcagagttttttttttaattctattaattgttggttctgt
aagttgacttcctatatttcccccgttctattcagctgagcaagaaaaat
tctggctgtgtttcaggaagaagaattcatgaggatttcatgactggggt
tttgaattttttttctattttttctagcaatgattgtagcatttttcttc
aaatatgaaaataaacatatttacgttgtctgtggaagcagatagtttcc
ctctctttctttctgcagcctccagcagctcatttgtgacattcagttgc
atttcagcctagtagactagtagcctgcttcttctcaagacatctttgga
tacttaagatgcaaggttagaagatggctccatcacagtcaaggatcatg
atgggtcttgaggtcaggagttttgcccagttttctctcagttacggctt
ttaaaaaaataaatttaagtgctctgtgcatgtcccgtgaagttcattta
cttcgcttcttcttctgcaagcacattctccctatctgtggctcattcta
atccttcttttgcagatgagaaagtttgacttgatatgggtcagttctgt
attctctttctcatcatgctgtttatgtctattcagagtttgatctacct
aatcatacgattttcttcaggtacctctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190127098_190128145
seq2: B6Ng01-171A09.b_45_1084

seq1  GAATTCCTATGCACTGCCTTCTGAATAAGAGAAGGGAATGATCTGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCACTGCCTTCTGAATAAGAGAAGGGAATGATCTGAGAAT  50

seq1  ACTATAAATTAATGATTTCTACCTGCTACTCTCCTCTCAGCACACTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATTAATGATTTCTACCTGCTACTCTCCTCTCAGCACACTGCTA  100

seq1  GGGTAAATTTCAGAGATGCAGCTGTTGACTCAAAGAGTGTGCATAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATTTCAGAGATGCAGCTGTTGACTCAAAGAGTGTGCATAACTGT  150

seq1  GTTTTGGGTACATATTTACAGACTGCCTTCAGCCTTCAGAAAATGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGTACATATTTACAGACTGCCTTCAGCCTTCAGAAAATGTTTGA  200

seq1  CTACAGCAGAATCCTATGGAAGGCTGCACCAGCATATCTGACCCTTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGAATCCTATGGAAGGCTGCACCAGCATATCTGACCCTTAGGT  250

seq1  TCTTGTCAATAGAAGGAATTGTCTCTTGTTGTCTTCTCTCTGTTGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAATAGAAGGAATTGTCTCTTGTTGTCTTCTCTCTGTTGAGGCA  300

seq1  CATAATGCATTTTGCAGTTCTTAGCCCACCTTGTTCAAATGCTTTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGCATTTTGCAGTTCTTAGCCCACCTTGTTCAAATGCTTTGAAAG  350

seq1  ATAATAAATTTGGTCTATAGTCTTGTGCTTATTGAGATAAATGAGATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATTTGGTCTATAGTCTTGTGCTTATTGAGATAAATGAGATTAT  400

seq1  CTCCATATACAATAATGGAATCTTTATATTTGAATTGTTCTTATCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATACAATAATGGAATCTTTATATTTGAATTGTTCTTATCACATC  450

seq1  ATCATATCACAAAGTATCATTTACTATTTTGTTACTCTGTATTTAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCACAAAGTATCATTTACTATTTTGTTACTCTGTATTTAGCTAT  500

seq1  TGTGTGTAGGTGCATGTTTTGTGTGTGAATTAATAGATGCTACAGCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAGGTGCATGTTTTGTGTGTGAATTAATAGATGCTACAGCAAGT  550

seq1  ATGTACAGGAAAACTTGCAGCCATAGCTTCCCAGTTTGCATTACAGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGGAAAACTTGCAGCCATAGCTTCCCAGTTTGCATTACAGGGTT  600

seq1  CATAGTCACTGAACCTCTGGGAGTTGAAGGTTGAAGGCAAGTGAGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCACTGAACCTCTGGGAGTTGAAGGTTGAAGGCAAGTGAGTTTAT  650

seq1  TTGCTTGACCATCTTGCTGATTGCCCCTCTGTAACTGTCGTTTTAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGACCATCTTGCTGATTGCCCCTCTGTAACTGTCGTTTTAAAAGT  700

seq1  CAGGATAGGGCAATAGAGCCAACAGTCACTGACGAGCCTCCATGTGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGGGCAATAGAGCCAACAGTCACTGACGAGCCTCCATGTGGTTT  750

seq1  ACTAATATAATTTCTTAAGGTACCTTGAACTTTTTTTTTTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||    ||||||||||||||||
seq2  ACTAATATAATTTCTTAAGGTACCTTGAAC----TTTTTTTTTTTTTTTT  796

seq1  TTTTTTGGTAAAAGTGTTGTCATCTGCTGGAGTGGAGTTGGATGGTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTAAAAGTGTTGTCATCTGCTGGAGTGGAGTTGGATGGTGATC  846

seq1  TATCTTTAAATTC-TTGTACAACTGAGAGTATGTTTCAAATGCCCAGCTG  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAATTCTTTGTACAACTGAGAGTATGTTTCAAATGCCCAGCTG  896

seq1  AGAACAATGTCTTGTATTAAT-GGAATTCTTTTTAGATCCCTTCTTTTTT  948
      ||||||||||||||||||||| |||||  ||||||||||||||| |||||
seq2  AGAACAATGTCTTGTATTAATGGGAATCTTTTTTAGATCCCTTCCTTTTT  946

seq1  GTT-ACACTTTCATTAAACTCTTA-TTTTCATGAAG-AAAAACATGAGAA  995
      ||| |||| ||||||||||||||| ||||||||||| |||||||||||||
seq2  GTTAACAC-TTCATTAAACTCTTATTTTTCATGAAGAAAAAACATGAGAA  995

seq1  AAGCCTAAGAACTATGTTTTTCCTGTAGATGATCATGTGTGTGAGTATGT  1045
      |   |||   |||||| |||  |||| ||||||||||||||||||||| |
seq2  A--GCTA--GACTATGGTTT--CTGT-GATGATCATGTGTGTGAGTAT-T  1037

seq1  GAT  1048
      |||
seq2  GAT  1040


seq1: chr1_190191713_190192809
seq2: B6Ng01-171A09.g_66_1147 (reverse)

seq1  GCTCAGAATGTTACCTAGAAGAAAAATCTGTATGATTTTAAGTATGATCA  50
      |||||||  | ||||| |||| |||||| ||||||  ||| ||| |||||
seq2  GCTCAGA--GGTACCT-GAAG-AAAATC-GTATGA--TTAGGTA-GATCA  42

seq1  AAACTCTTTAAATAGACATAAAACAAACATGATTGAAGAAAGAGAATACA  100
      ||   || | ||||||||||||   | ||||||   ||||||||||||||
seq2  AA---CTCTGAATAGACATAAA--CAGCATGAT--GAGAAAGAGAATACA  85

seq1  AGAAACTGACCCATATTCAAGTCAAACTTTCTCATCTGCAAAAG-AGGAT  149
         |||||||||||| |||||||||||||||||||||||||||| |||||
seq2  --GAACTGACCCATA-TCAAGTCAAACTTTCTCATCTGCAAAAGAAGGAT  132

seq1  TAGAATGAGCCACAGATAGGGAGAATGTGCTTGCAGAAG-AGAAGCGAAG  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGAATGAGCCACAGATAGGGAGAATGTGCTTGCAGAAGAAGAAGCGAAG  182

seq1  TAAATGAACTTCACGGGACATGCACAGAGCACTTAAATTTA-TTTTTTAA  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAATGAACTTCACGGGACATGCACAGAGCACTTAAATTTATTTTTTTAA  232

seq1  AAGCCGTAACCTGAGAGAAAACTGGGCAAAACTCCTGACCTCAAGACCCA  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTAA-CTGAGAGAAAACTGGGCAAAACTCCTGACCTCAAGACCCA  281

seq1  TCATGATCCTTGACTGTGATGGAGCCATCTTCTAACCTTGCATCTTAAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCCTTGACTGTGATGGAGCCATCTTCTAACCTTGCATCTTAAGT  331

seq1  ATCCAAAGATGTCTTGAGAAGAAGCAGGCTACTAGTCTACTAGGCTGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGATGTCTTGAGAAGAAGCAGGCTACTAGTCTACTAGGCTGAAA  381

seq1  TGCAACTGAATGTCACAAATGAGCTGCTGGAGGCTGCAGAAAGAAAGAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGAATGTCACAAATGAGCTGCTGGAGGCTGCAGAAAGAAAGAGA  431

seq1  GGGAAACTATCTGCTTCCACAGACAACGTAAATATGTTTATTTTCATATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTATCTGCTTCCACAGACAACGTAAATATGTTTATTTTCATATT  481

seq1  TGAAGAAAAATGCTACAATCATTGCTAGAAAAAATAGAAAAAAAATTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAATGCTACAATCATTGCTAGAAAAAATAGAAAAAAAATTCAA  531

seq1  AACCCCAGTCATGAAATCCTCATGAATTCTTCTTCCTGAAACACAGCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGTCATGAAATCCTCATGAATTCTTCTTCCTGAAACACAGCCAG  581

seq1  AATTTTTCTTGCTCAGCTGAATAGAACGGGGGAAATATAGGAAGTCAACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTGCTCAGCTGAATAGAACGGGGGAAATATAGGAAGTCAACT  631

seq1  TACAGAACCAACAATTAATAGAATTAAAAAAAAAACTCTGAAATCAAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACCAACAATTAATAGAATTAAAAAAAAAACTCTGAAATCAAAGT  681

seq1  ATAGACAACAGAGTCACCCCACCCCTCTCTTTTATCTTAGCACACAATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAACAGAGTCACCCCACCCCTCTCTTTTATCTTAGCACACAATGT  731

seq1  TAACGGTTAGTAGTATTGTCTTCAAGTTAGGTGACCACAATAAATGTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGTTAGTAGTATTGTCTTCAAGTTAGGTGACCACAATAAATGTCAA  781

seq1  TAAGCCTTTCAGTTATGCATATTTTAAAACAAGTTTTAAAATTAAAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTCAGTTATGCATATTTTAAAACAAGTTTTAAAATTAAAATTT  831

seq1  AGGTAGTCCTTTCTCAAAGTCTCCATTTCTGTAACATTGCATTGAAGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCCTTTCTCAAAGTCTCCATTTCTGTAACATTGCATTGAAGAAG  881

seq1  TTTACATCCTTAATAATCATTCTTTATAACCTACAAGTCCTATTAACCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCTTAATAATCATTCTTTATAACCTACAAGTCCTATTAACCCT  931

seq1  CATCCTTATACCCATGCATATGAAAACTTAACAGTGTTCCTCCACCAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTATACCCATGCATATGAAAACTTAACAGTGTTCCTCCACCAACC  981

seq1  ATGGAAAGTGGTTCTCTCTGCTCCAATATCCATAAATGTCATTAGCTCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTGGTTCTCTCTGCTCCAATATCCATAAATGTCATTAGCTCCT  1031

seq1  CAGCCATGGGCAGAACACCAGGAGCTTACCCCCACCTAAAGC-TGGAATT  1096
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGCCATGGGCAGAACACCAGGAGCTTACCCCCACCTAAAGCGTGGAATT  1081

seq1  C  1097
      |
seq2  C  1082


| Home | SequenceCutter | Blast | Download |