BAC Information

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BAC

Clone NameB6Ng01-171F19
Chromosome1 (Build37)
Map Location 173,332,295 - 173,469,489
singlet/doubletdoublet
Overlap geneArhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171F19.bB6Ng01-171F19.g
ACCGA000270GA000271
length634281
definitionB6Ng01-171F19.b B6Ng01-171F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,468,886 - 173,469,489)(173,332,295 - 173,332,580)
sequence
gaattccaagatcagggtcagcttcaaggactttctaggaaccattggaa
cactggcaaaggcttagctatatgtcaaaatcaatccttaatggcactta
tactaaaacaatattgaaagagagcacacggattcatacaccagattaac
gcggggacagggtttgagtatatgggctatgggaatgccaaggtttcagg
agactaagattccgtgaaaggctttgcctcgtgactgcttccaggctttc
atgcctatcatgtttgtcactactggagtgtatgtagcagaacagggaat
ggattaccagggagatgaagcagggaatggaactccaggtggatggtaca
gggaatggaacaccagtgtaagtatgcactggtcagtgtctagatatgca
tgctggggaccagtgtcacttgaggatgagtcagttaaactgctcagcca
ccttcttattcacttttgaggtgatacttcttttccaatgttgctgggca
ccattgagttctgtgtccttctctgctaggaggaaaccaaacacattata
tctaatagtgtgtctcctctgtggtggggaagaaggcaggggtggggtgg
gtatagcagacccatgtgaagaaaagagtggtta
cttatgcgccacttggtccacatggcctcatttagtgcccaaaccaacat
gcatgctcgcaatctggcaattgtgtgggcccccaacctgctgaggtggg
tgcgtgtatgagcagtgtgaatgaagctcctgggaggctaaatgtacaca
gatgggtgtggttgtgtaggtgtactggagaagggttttgaggagggtct
ggcaaacccaacaaggcaggaaaatttcacctgccgcctcctggtacaat
tgcccatgacttgggccttctctccgactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173468886_173469489
seq2: B6Ng01-171F19.b_43_646 (reverse)

seq1  ATACCCACCCCACCCCTGCCTTCTTCCCCACCACAGAGGAGACACACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACCCCACCCCTGCCTTCTTCCCCACCACAGAGGAGACACACTAT  50

seq1  TAGATATAATGTGTTTGGTTTCCTCCTAGCAGAGAAGGACACAGAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAATGTGTTTGGTTTCCTCCTAGCAGAGAAGGACACAGAACTCA  100

seq1  ATGGTGCCCAGCAACATTGGAAAAGAAGTATCACCTCAAAAGTGAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCCAGCAACATTGGAAAAGAAGTATCACCTCAAAAGTGAATAAG  150

seq1  AAGGTGGCTGAGCAGTTTAACTGACTCATCCTCAAGTGACACTGGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCTGAGCAGTTTAACTGACTCATCCTCAAGTGACACTGGTCCCC  200

seq1  AGCATGCATATCTAGACACTGACCAGTGCATACTTACACTGGTGTTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATATCTAGACACTGACCAGTGCATACTTACACTGGTGTTCCAT  250

seq1  TCCCTGTACCATCCACCTGGAGTTCCATTCCCTGCTTCATCTCCCTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTACCATCCACCTGGAGTTCCATTCCCTGCTTCATCTCCCTGGTA  300

seq1  ATCCATTCCCTGTTCTGCTACATACACTCCAGTAGTGACAAACATGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCCCTGTTCTGCTACATACACTCCAGTAGTGACAAACATGATAG  350

seq1  GCATGAAAGCCTGGAAGCAGTCACGAGGCAAAGCCTTTCACGGAATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGCCTGGAAGCAGTCACGAGGCAAAGCCTTTCACGGAATCTTA  400

seq1  GTCTCCTGAAACCTTGGCATTCCCATAGCCCATATACTCAAACCCTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGAAACCTTGGCATTCCCATAGCCCATATACTCAAACCCTGTCC  450

seq1  CCGCGTTAATCTGGTGTATGAATCCGTGTGCTCTCTTTCAATATTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGTTAATCTGGTGTATGAATCCGTGTGCTCTCTTTCAATATTGTTTT  500

seq1  AGTATAAGTGCCATTAAGGATTGATTTTGACATATAGCTAAGCCTTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGTGCCATTAAGGATTGATTTTGACATATAGCTAAGCCTTTGCC  550

seq1  AGTGTTCCAATGGTTCCTAGAAAGTCCTTGAAGCTGACCCTGATCTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCAATGGTTCCTAGAAAGTCCTTGAAGCTGACCCTGATCTTGGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604

seq1: chr1_173332295_173332580
seq2: B6Ng01-171F19.g_68_354

seq1  GAATTCCTTATGCGCCACTTGGTCCACATGGCCTCATTTAGTGCCCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATGCGCCACTTGGTCCACATGGCCTCATTTAGTGCCCAAAC  50

seq1  CAACATGCATGCTCGCAATCTGGCAATTGTGTGGGCCCCCAACCTGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCATGCTCGCAATCTGGCAATTGTGTGGGCCCCCAACCTGCTGA  100

seq1  GGTGGGTGCGTGTATGAGCAGTGTGAATGAAGCTCCTGGGAGGCTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGCGTGTATGAGCAGTGTGAATGAAGCTCCTGGGAGGCTAAATG  150

seq1  TACACAGATGGGTGTGGTTGTGTAGGTGTACTGGAGAAGGGTTTTGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGATGGGTGTGGTTGTGTAGGTGTACTGGAGAAGGGTTTTGAGGA  200

seq1  GGGTCTCATAAACCCAGCAAGGCAGG-AAAGTTCAGCAGCAGCCAAGTGG  249
      ||||||   ||||||| ||||||||| ||| |||| | || |||   |||
seq2  GGGTCTGGCAAACCCAACAAGGCAGGAAAATTTCACCTGCCGCCTCCTGG  250

seq1  TACACAGTCCACTGACTTGGGCCTTCTCTGAGACTGA  286
      ||||    ||  |||||||||||||||||  ||||||
seq2  TACAATTGCCCATGACTTGGGCCTTCTCTCCGACTGA  287