BAC Information

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BAC

Clone NameB6Ng01-172J21
Chromosome1 (Build37)
Map Location 173,812,545 - 173,929,277
singlet/doubletdoublet
Overlap geneCd84, Slamf6
Upstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1
Downstream geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172J21.bB6Ng01-172J21.g
ACCGA001185GA001186
length1,098358
definitionB6Ng01-172J21.b B6Ng01-172J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,812,545 - 173,813,631)(173,928,920 - 173,929,277)
sequence
gaattcaaatttgaaccacttcttcagaatacatcccaggactaggtcaa
agggaataatggacatgagacccatcaagtaggtcctacaagaggtgaag
tttttacctacaatgcaccacttggggaagcatcagaactcgtgtatgaa
aggcaagacttgatcatactacactggcttaatggagatatgcttgtaaa
aaaaggtgttgtttaagaatagagactctcaggctagagagatggtggct
caaccttataatgtctaggcttacaaccaaagtgtaagagcacagagact
ctccagatgcatggaggttaaatccagtttcactcaggagtcaaacctat
ccagctggtgaagccagcaaacactgaaagtcaattttacaatctcatac
ttactgtggattggtcacaagggaaaggaaaggactcgccatccaggata
aaactaggtaacttatggttctcttggatcagaaagtattgccaggagcc
agaaaaatcataggcaaagccaccattgaccacttactctgctctcagct
gctctggagagagagcagcagcaatgattggatggatggggaaaaggcat
gagagaggagaggaaagaggatgacctcactatatttgcagattcaccct
ggacgagctgctgccgccaactgcactaccctttgatactgaggcagccc
ttcattcttacaaactaaagggtgacctgttctctttccactctcctcat
atcctacaaaatatacccttggtgtattcattacttttctcattgttgtg
acacaatacatgtatgtagagatgaagttccatcttgactgttatttggc
cagtttattttagcactgtaggatttcatttctctcagctataagatatc
tataatgttaaaggcttactgcatgtagttattaaagtagattattacag
atgcaggtagccaggcctggtacacagtactaggtaaatgttaactcctt
tgtgtaaatgccagccctgattatgggtatgagagtttgcatttctatgt
gacaggtttgtggacatggcattcatagtcaagaagaacctcacaaat
atgtgctcttggcctcttctctccccaccctaccctccctactctgtaac
taggctgccctcgcactcacactttccagtcttcctgtcattggctcgga
tttctgattggtattacaggtgtgctccaggctggactcctagtcttcga
aggttaaacctaagctctcctctgtggagatggcacgcttattagataat
gccctcctttcctctcgctcgtggctttttcaggtgttgtgggtgtggat
ataagatccaatctattggagatgccagatcagagaatctaatctaaatt
ggggtggggggcccaatcagtgttcagcaatgatcgtaagggggtgtgtg
gtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173812545_173813631
seq2: B6Ng01-172J21.b_49_1146

seq1  GAATTCAAATTTGAACCACTTCTTCAGAATACATCCCAGGACTAGGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTGAACCACTTCTTCAGAATACATCCCAGGACTAGGTCAA  50

seq1  AGGGAATAATGGACATGAGACCCATCAAGTAGGTCCTACAAGAGGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAATGGACATGAGACCCATCAAGTAGGTCCTACAAGAGGTGAAG  100

seq1  TTTTTACCTACAATGCACCACTTGGGGAAGCATCAGAACTCGTGTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTACAATGCACCACTTGGGGAAGCATCAGAACTCGTGTATGAA  150

seq1  AGGCAAGACTTGATCATACTACACTGGCTTAATGGAGATATGCTTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGACTTGATCATACTACACTGGCTTAATGGAGATATGCTTGTAAA  200

seq1  AAAAGGTGTTGTTTAAGAATAGAGACTCTCAGGCTAGAGAGATGGTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGTTGTTTAAGAATAGAGACTCTCAGGCTAGAGAGATGGTGGCT  250

seq1  CAACCTTATAATGTCTAGGCTTACAACCAAAGTGTAAGAGCACAGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTATAATGTCTAGGCTTACAACCAAAGTGTAAGAGCACAGAGACT  300

seq1  CTCCAGATGCATGGAGGTTAAATCCAGTTTCACTCAGGAGTCAAACCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATGCATGGAGGTTAAATCCAGTTTCACTCAGGAGTCAAACCTAT  350

seq1  CCAGCTGGTGAAGCCAGCAAACACTGAAAGTCAATTTTACAATCTCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGTGAAGCCAGCAAACACTGAAAGTCAATTTTACAATCTCATAC  400

seq1  TTACTGTGGATTGGTCACAAGGGAAAGGAAAGGACTCGCCATCCAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGGATTGGTCACAAGGGAAAGGAAAGGACTCGCCATCCAGGATA  450

seq1  AAACTAGGTAACTTATGGTTCTCTTGGATCAGAAAGTATTGCCAGGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGTAACTTATGGTTCTCTTGGATCAGAAAGTATTGCCAGGAGCC  500

seq1  AGAAAAATCATAGGCAAAGCCACCATTGACCACTTACTCTGCTCTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCATAGGCAAAGCCACCATTGACCACTTACTCTGCTCTCAGCT  550

seq1  GCTCTGGAGAGAGAGCAGCAGCAATGATTGGATGGATGGGGAAAAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAGAGAGAGCAGCAGCAATGATTGGATGGATGGGGAAAAGGCAT  600

seq1  GAGAGAGGAGAGGAAAGAGGATGACCTCACTATATTTGCAGATTCACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGAGAGGAAAGAGGATGACCTCACTATATTTGCAGATTCACCCT  650

seq1  GGACGAGCTGCTGCCGCCAACTGCACTACCCTTTGATACTGAGGCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGCTGCTGCCGCCAACTGCACTACCCTTTGATACTGAGGCAGCCC  700

seq1  TTCATTCTTACAAACTAAAGGGTGACCTGTTCTCTTTCCACTCTCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTACAAACTAAAGGGTGACCTGTTCTCTTTCCACTCTCCTCAT  750

seq1  ATCCTACAAAATATACCCTTGGTGTATTCATTACTTTTCTCATTGTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACAAAATATACCCTTGGTGTATTCATTACTTTTCTCATTGTTGTG  800

seq1  ACACAATACATGTATGTAGAGATGAAGTTCCATCTTGACTGTTATTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATACATGTATGTAGAGATGAAGTTCCATCTTGACTGTTATTTGGC  850

seq1  CAG-TTATTTTAGCACTGTAGGATTTCATTTCTCTCAGCTATAAGATATC  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTTTAGCACTGTAGGATTTCATTTCTCTCAGCTATAAGATATC  900

seq1  TATAATGTT-AAGGCTTACTGCATGTAGTTATT-AAGTAGATTA-TACAG  946
      ||||||||| ||||||||||||||||||||||| |||||||||| |||||
seq2  TATAATGTTAAAGGCTTACTGCATGTAGTTATTAAAGTAGATTATTACAG  950

seq1  ATGCA-GTAGCCA-GCCTGGTACACAGTACTAGGTAAATGTTAACTCCTT  994
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTAGCCAGGCCTGGTACACAGTACTAGGTAAATGTTAACTCCTT  1000

seq1  TGTGTAAATGGCAGGCCTGATTATGGTATTGAGAG-TTGCA-TTCTATGT  1042
      |||||||||| ||| |||||||||||   |||||| ||||| ||||||||
seq2  TGTGTAAATGCCAGCCCTGATTATGGGTATGAGAGTTTGCATTTCTATGT  1050

seq1  GACAAGGTTTGT-GACAT-GCA-TCATAAGTCAAGAAGA--CTCACAAAT  1087
      ||| |||||||| ||||| ||| |||| |||||||||||  |||||||||
seq2  GAC-AGGTTTGTGGACATGGCATTCAT-AGTCAAGAAGAACCTCACAAAT  1098

seq1: chr1_173928920_173929277
seq2: B6Ng01-172J21.g_74_431 (reverse)

seq1  TCCCCTACCACACACCCCCTTACGATCATTGCTGAACACTGATTGGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCACACACCCCCTTACGATCATTGCTGAACACTGATTGGGCCC  50

seq1  CCCACCCCAATTTAGATTAGATTCTCTGATCTGGCATCTCCAATAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCAATTTAGATTAGATTCTCTGATCTGGCATCTCCAATAGATTG  100

seq1  GATCTTATATCCACACCCACAACACCTGAAAAAGCCACGAGCGAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATATCCACACCCACAACACCTGAAAAAGCCACGAGCGAGAGGAA  150

seq1  AGGAGGGCATTATCTAATAAGCGTGCCATCTCCACAGAGGAGAGCTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCATTATCTAATAAGCGTGCCATCTCCACAGAGGAGAGCTTAGG  200

seq1  TTTAACCTTCGAAGACTAGGAGTCCAGCCTGGAGCACACCTGTAATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTTCGAAGACTAGGAGTCCAGCCTGGAGCACACCTGTAATACCA  250

seq1  ATCAGAAATCCGAGCCAATGACAGGAAGACTGGAAAGTGTGAGTGCGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAATCCGAGCCAATGACAGGAAGACTGGAAAGTGTGAGTGCGAGG  300

seq1  GCAGCCTAGTTACAGAGTAGGGAGGGTAGGGTGGGGAGAGAAGAGGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGTTACAGAGTAGGGAGGGTAGGGTGGGGAGAGAAGAGGCCAA  350

seq1  GAGCACAT  358
      ||||||||
seq2  GAGCACAT  358