BAC Information

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BAC

Clone NameB6Ng01-172L03
Chromosome1 (Build37)
Map Location 109,627,826 - 109,772,886
singlet/doubletdoublet
Overlap genenone
Upstream geneFvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172L03.bB6Ng01-172L03.g
ACCGA001244GA001245
length8621,133
definitionB6Ng01-172L03.b B6Ng01-172L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,772,022 - 109,772,886)(109,627,826 - 109,628,483)
sequence
gaattcagaggtctgaagtataatctaaagaggagcattgatgaagatgg
gggtagggagtgaggcacatgtagtttaggtggcacagtaagaagagaaa
tacaagactcactcccctccatatgcctatctcagagcaagatcctggcc
agggttctcactgtgtggatgatctgtatgtgttctatttcctcttaact
agattctggataattattattttaataattctttatatactgctcacact
actgttgtccagtagaactgcttttgtgatttcttttatattaaattttt
aaaaaacttagtggatgatgtctataaacaagagaaaaatcatatagtat
tgcgttgatgctaaggaccaaatgaaggagattttataaacaaaagattt
tgaagaagaaatggagaactcaatcagacacaagtttaattaaaaactaa
tgaagtgagggagttgggcttatccaagatgagaattatttcactgtatg
ctagcctgcttactcattatctaaaccagtgttttaaattcactcatatg
aatctaaagtaaaataatactttctttagcaaaactgatcatgtattctt
ccaatctgtatctatttctaccaaagcattcatccatttcacattgcatg
gttatgaaatttggggaatcagtatgtctgacttagtacaagattctcat
aactactgatattcgggactaaatcggacctgctgagttatatcaaatgc
atgataaaaatatgtgagcttattttttccctataaaactcctctaactg
ttgtacatactataatgctcttagttatcaacaccctaccaaatcatatg
atattgatgttt
gaattcatgaaattcttgggcaaatggatgtatctggaggaaatcttgac
tgaggtaacccaatcacaaaagaagtcacttgatatgcactcactggtaa
gtggatattagcccagaaacttagaatacccagatacaacttccaaaata
caagaaaatcaagaaggaagaccaaagcgtggatactccattcctcccta
gaatatggaataaaatatccatggaaggagttgcagagacaaagtttgga
ggtaagatgaaaggatggaccatccagagactgccacacccaggggtcca
tcccataatcagccaccaaacacagccactattgcatacgccagcaagat
tttgctgaagggagcctgataaagctgtctcttgtgaggctttgccagtg
cctggcaaatacagaagtggatgctcacagtcatctattggatggaacac
aggggccccaattgaggagctagagaaagtacccaaggagctgaaggggt
ctgcaaccctataggtggaacaacaatcataaattccttccccacccttt
tgtgatgtgagccttgttaaaactatcttctccttttccttcctaggatg
tctttgtctagaaccctgaaagcgcctcttaaaaaggtaaccatggagga
aggtataacactatctttcagttttgtggaatgtaggagctgaccttgtt
cagatttgaaagagcaccttctctcatgaagatatcaaaagacctgcttt
tgttttggataaagccaaatggtaaacatagacgtctagagactggaaag
atggcttaagctctgttctctcagattcccagcccccatgtcagacgctc
ccaagcacatatatacaagctccagatgatctgacacctagagattccat
gagcatccacagtcacatgcacacactcacatatagacatatctatacac
atacacatcaaacacactcacatattgaaaatagtaaaactaaagaaact
agtttcagcatctcacccccactccaggtataaatttcatctccctttag
tgagtctaatttggctttctatacacggagtttagtaagccttctgtcta
catgaatcttaggtctgaatctgtgatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_109772022_109772886
seq2: B6Ng01-172L03.b_44_905 (reverse)

seq1  AAACATCAAT-TCACTATTATGTGGTAGGGTGTTGAAAAATTAAGAGACA  49
      |||||||||| ||| ||| || ||||||||||||| | || ||||||   
seq2  AAACATCAATATCA-TATGATTTGGTAGGGTGTTG-ATAACTAAGAGCAT  48

seq1  AATAGTTGGTACAATTGTTAGTGTTTATTTTCCAGGCTTAAAATGATATT  99
       |||||  ||||||  ||||| |    ||||  |||   ||||| |   |
seq2  TATAGTATGTACAACAGTTAGAG-GAGTTTTATAGGGAAAAAAT-AAGCT  96

seq1  TACAAGTATATA-GATGCATTCACTTCTAACACAGCACCTCAAATTTCGT  148
       |||  | | ||  |||||||    | |||| |||||  ||  |||| ||
seq2  CACATATTTTTATCATGCATT-TGATATAACTCAGCAGGTCCGATTTAGT  145

seq1  CACAAATATTCATATTTAACTGTATCAAATACTATGCAATATATACAAAT  198
      | | |||||   || |||   | |||   ||||| |  | | ||||  ||
seq2  CCCGAATATCAGTAGTTATGAGAATCTTGTACTAAGTCAGACATACTGAT  195

seq1  TCCCCAAATTTCATAACCATGCAATGTGAAATGGATGAATGCTTTGGTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAATTTCATAACCATGCAATGTGAAATGGATGAATGCTTTGGTAG  245

seq1  AAATAGATACAGATTGGAAGAATACATGATCAGTTTTGCTAAAGAAAGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATACAGATTGGAAGAATACATGATCAGTTTTGCTAAAGAAAGTA  295

seq1  TTATTTTACTTTAGATTCATATGAGTGAATTTAAAACACTGGTTTAGATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACTTTAGATTCATATGAGTGAATTTAAAACACTGGTTTAGATA  345

seq1  ATGAGTAAGCAGGCTAGCATACAGTGAAATAATTCTCATCCTGGATAAGC  398
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGAGTAAGCAGGCTAGCATACAGTGAAATAATTCTCATCTTGGATAAGC  395

seq1  CCAACTCCCTCACTTCATTAGTTTTTAATTAAACTTCTGTCTGATTGAGT  448
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAACTCCCTCACTTCATTAGTTTTTAATTAAACTTGTGTCTGATTGAGT  445

seq1  TCTCCATTTCTTTTTCAAAATCTTTTGTTTATAAAATCTCCTTCATTTGG  498
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTCTTCTTCAAAATCTTTTGTTTATAAAATCTCCTTCATTTGG  495

seq1  TCCTTAGCATCAACGCAATACTATATGATTTTTCTCTTGTTTATAGACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGCATCAACGCAATACTATATGATTTTTCTCTTGTTTATAGACAT  545

seq1  CATCCACTAAGTTTTTTAAAAATTTAATATAAAAGAAATCACAAAAGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTAAGTTTTTTAAAAATTTAATATAAAAGAAATCACAAAAGCAG  595

seq1  TTCTACTGGACAACAGTAGTGTGAGCAGTATATAAAGAATTATTAAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGGACAACAGTAGTGTGAGCAGTATATAAAGAATTATTAAAATA  645

seq1  ATAATTATCCAGAATCTAGTTAAGAGGAAATAGAACACATACAGATCATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATCCAGAATCTAGTTAAGAGGAAATAGAACACATACAGATCATC  695

seq1  CACACAGTGAGAACCCTGGCCAGGATCTTGCTCTGAGATAGGCATATGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTGAGAACCCTGGCCAGGATCTTGCTCTGAGATAGGCATATGGA  745

seq1  GGGGAGTGAGTCTTGTATTTCTCTTCTTACTGTGCCACCTAAACTACATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGAGTCTTGTATTTCTCTTCTTACTGTGCCACCTAAACTACATG  795

seq1  TGCCTCACTCCCTACCCCCATCTTCATCAATGCTCCTCTTTAGATTATAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACTCCCTACCCCCATCTTCATCAATGCTCCTCTTTAGATTATAC  845

seq1  TTCAGACCTCTGAATTC  865
      |||||||||||||||||
seq2  TTCAGACCTCTGAATTC  862

seq1: chr1_109627826_109628483
seq2: B6Ng01-172L03.g_563_1194

seq1  TGCAACCCTATAGGTGGAACAACAATCATAAATTCCTTCCCCACCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCTATAGGTGGAACAACAATCATAAATTCCTTCCCCACCCTTTT  50

seq1  GTGATGTGAGCCTTGTTAAAACTATCTTCTCCTTTTCCTTCCTAGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTGAGCCTTGTTAAAACTATCTTCTCCTTTTCCTTCCTAGGATGT  100

seq1  CTTTGTCTAGAACCCTGAAAGCGCCTCTTAAAAAGGTAACCATGGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTAGAACCCTGAAAGCGCCTCTTAAAAAGGTAACCATGGAGGAA  150

seq1  GGTATAACACTATCTTTCAGTTTTGTGGAATGTAGGAGCTGACCTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAACACTATCTTTCAGTTTTGTGGAATGTAGGAGCTGACCTTGTTC  200

seq1  AGATTTGAAAGAGCACCTTCTCTCATGAAGATATCAAAAGACCTGCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAAAGAGCACCTTCTCTCATGAAGATATCAAAAGACCTGCTTTT  250

seq1  GTTTTGGATAAAGCCAAATGGTAAACATAGACGTCTAGAGACTGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGATAAAGCCAAATGGTAAACATAGACGTCTAGAGACTGGAAAGA  300

seq1  TGGCTTAAGCTCTGTTCTCTCAGATTCCCAGCCCCCATGTCAGACGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGCTCTGTTCTCTCAGATTCCCAGCCCCCATGTCAGACGCTCC  350

seq1  CAAGCACATATATACAAGCTCCAGATGATCTGACACCTAGAGATTCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACATATATACAAGCTCCAGATGATCTGACACCTAGAGATTCCATG  400

seq1  AGCATCCACAGTCACATGCACACACTCACATATAGACATATCTATTACAC  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCATCCACAGTCACATGCACACACTCACATATAGACATATCTA-TACAC  449

seq1  ATACACATCAAACACACTCACATAATTAAAAATAGTAAAAACTTAAAGAA  500
      ||||||||||||||||||||||| ||| ||||||||||||   ||||| |
seq2  ATACACATCAAACACACTCACAT-ATTGAAAATAGTAAAA--CTAAAG-A  495

seq1  AACTAGTTTCAAGCATCTCACCCCCAACTCCAAGGTAATAAATTTCATCT  550
      |||||||||| |||||||||||||| ||||| |||| |||||||||||||
seq2  AACTAGTTTC-AGCATCTCACCCCC-ACTCC-AGGT-ATAAATTTCATCT  541

seq1  CCCCTTTTAGTGAAGTCTAAATTTTGGGCTTTCTATACACGGAAGTTTTA  600
      |||  ||||||| |||||||   || |||||||||||||||| |||||  
seq2  CCC--TTTAGTG-AGTCTAA---TTTGGCTTTCTATACACGG-AGTTT--  582

seq1  AGTAAAGCCTTTCCTGTCTACAAATTGAGTC-TAGGTCTGAGTCTGGTGG  649
      ||| |||||||  |||||||||   ||| || ||||||||| ||| ||| 
seq2  AGT-AAGCCTT--CTGTCTACA---TGAATCTTAGGTCTGAATCT-GTGA  625

seq1  AGTGTGTGT  658
       ||||||  
seq2  TGTGTGT--  632