BAC Information

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BAC

Clone NameB6Ng01-172L18
Chromosome1 (Build37)12 (Build37)
Map Location 155,273,874 - 155,274,85450,436,946 - 50,437,237
singlet/doubletsingletsinglet
Overlap gene1700012A16Rik
Upstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
Downstream geneDhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172L18.bB6Ng01-172L18.g
ACCGA001274GA001275
length987494
definitionB6Ng01-172L18.b B6Ng01-172L18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(155,273,874 - 155,274,854)(50,436,946 - 50,437,237)
sequence
gaattctagatcaagtggcagagtgcttgaagtatttgagtcccagtacc
aaacgcagttcctgcactcctggagaaaggaagaaaggatagagccatag
agaactacaatgaggcaggcatcatggtacacccctgcaatcccagcact
taggaagttcaggcaggaggatcgccctgagtttgaggctagtgtgggct
acccagcaacatcctgtgtcaaacaaaaataacccacaaagaacttcatg
gcttcacacagtggaaaactatgcagttgtacattcgtgctacttaggtt
aaaaagcaagaagcttggaggtgggcatgataggtgggtgggtgaataga
cacagagaaaaatgactgaacggaaacagggcatgaggtcagcagtgctc
actctcgccagggtagggctgattttaaattgttgcttttgcattttctg
tctcctcctcctcctcttcctcctcctcttcttcctcttcttcttcctcc
tcttccttctcctccttctcttttccccttttgatttttgaaagtctctc
actatgaagccctggctgcctgaagctcattaagtagtccagcctagcct
ttagctagtgatggcctcctgcctctgtccctggagaggtggagccacag
atgtccccaccatgatgatcatgtctttcttgtgtttctcataagttttg
cttatcttagagacaggaaacatttttaatttaaaaaacatcctctataa
aactcagactgtgtaaatggcctgtttttagtcagatatttgaggattgg
aggccatgcctgctaaaatctgtggtgataatttgtattgattattccat
catttgagtatagtcctagtgaattttcataacagtttagattacttaac
ccttttatgtgtgtctgactttaaatttaaaagtcaagtggggcagattt
ttactgagtgtttaatcatttcttgttttataaaata
actctgcaaaacaggccagccttgaactcacagagacccacctaggcctg
cctccagattgctgggattaaaggcgtacgccgccatatctgactccact
gctggatttgtttgagcaggggccaaatgaactagctactgcaactggca
ggtcctccttcctgggcaacaataaagatatgatgtctttgtcacttcca
ttgctgtgaagagactgaggaaactcttgtgagagaaaatgtttaactgg
gggcttgctttccatttcagaggttgagtctgttaccatggtgaggagca
tggtggcgtgcaggctggtgctggagcagtagctgaaagcaggcttagac
agagagacaattcgcttggcatgggcttttgaaactcaaagcccacccac
agttacacacatcctccaacaaggccacacctcctaatccttctaattgt
tgagcctatggggtcctttttgtttgtttgttttgttgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155273874_155274854
seq2: B6Ng01-172L18.b_40_1026

seq1  GAATTCTAGATCAAGTGGCAGAGTGCTTGAAGTATTTGAGTCCCAGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATCAAGTGGCAGAGTGCTTGAAGTATTTGAGTCCCAGTACC  50

seq1  AAACGCAGTTCCTGCACTCCTGGAGAAAGGAAGAAAGGATAGAGCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGTTCCTGCACTCCTGGAGAAAGGAAGAAAGGATAGAGCCATAG  100

seq1  AGAACTACAATGAGGCAGGCATCATGGTACACCCCTGCAATCCCAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACAATGAGGCAGGCATCATGGTACACCCCTGCAATCCCAGCACT  150

seq1  TAGGAAGTTCAGGCAGGAGGATCGCCCTGAGTTTGAGGCTAGTGTGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTTCAGGCAGGAGGATCGCCCTGAGTTTGAGGCTAGTGTGGGCT  200

seq1  ACCCAGCAACATCCTGTGTCAAACAAAAATAACCCACAAAGAACTTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCAACATCCTGTGTCAAACAAAAATAACCCACAAAGAACTTCATG  250

seq1  GCTTCACACAGTGGAAAACTATGCAGTTGTACATTCGTGCTACTTAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACACAGTGGAAAACTATGCAGTTGTACATTCGTGCTACTTAGGTT  300

seq1  AAAAAGCAAGAAGCTTGGAGGTGGGCATGATAGGTGGGTGGGTGAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAGAAGCTTGGAGGTGGGCATGATAGGTGGGTGGGTGAATAGA  350

seq1  CACAGAGAAAAATGACTGAACGGAAACAGGGCATGAGGTCAGCAGTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAAATGACTGAACGGAAACAGGGCATGAGGTCAGCAGTGCTC  400

seq1  ACTCTCGCCAGGGTAGGGCTGATTTTAAATTGTTGCTTTTGCATTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGCCAGGGTAGGGCTGATTTTAAATTGTTGCTTTTGCATTTTCTG  450

seq1  TCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCTTCCTCTTCTTCTTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCTTCCTCTTCTTCTTCCTCC  500

seq1  TCTTCCTTCTCCTCCTTCTCTTTTCCCCTTTTGATTTTTGAAAGTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTCCTCCTTCTCTTTTCCCCTTTTGATTTTTGAAAGTCTCTC  550

seq1  ACTATGAAGCCCTGGCTGCCTGAAGCTCATTAAGTAGTCCAGCCTAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAGCCCTGGCTGCCTGAAGCTCATTAAGTAGTCCAGCCTAGCCT  600

seq1  TTAGCTAGTGATGGCCTCCTGCCTCTGTCCCTGGAGAGGTGGAGCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAGTGATGGCCTCCTGCCTCTGTCCCTGGAGAGGTGGAGCCACAG  650

seq1  ATGTCCCCACCATGATGATCATGTCTTTCTTGTGTTTCTCATAAGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCACCATGATGATCATGTCTTTCTTGTGTTTCTCATAAGTTTTG  700

seq1  CTTATCTTAGAGACAGGAAACATTTTTAATTTAAAAAACATCCTCTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTAGAGACAGGAAACATTTTTAATTTAAAAAACATCCTCTATAA  750

seq1  AACTCAGACTGTGTAAATGGCCTGTTTTTAGTCAGATA-TTGAGGATTGG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACTCAGACTGTGTAAATGGCCTGTTTTTAGTCAGATATTTGAGGATTGG  800

seq1  AGGCCATGCCTGCTAAAAATCTGTGGAAAT-ATTTGTATTGATTATTCCA  848
      |||||||||||||| |||||||||||  || |||||||||||||||||||
seq2  AGGCCATGCCTGCT-AAAATCTGTGGTGATAATTTGTATTGATTATTCCA  849

seq1  TCA-TTGAGTATAGT-CTAGTGAA-TTTCATAACAGTTTAGATTACTTA-  894
      ||| ||||||||||| |||||||| |||||||||||||||||||||||| 
seq2  TCATTTGAGTATAGTCCTAGTGAATTTTCATAACAGTTTAGATTACTTAA  899

seq1  -CCCTTTATGTGTGTCTGACTTTAAATTTAAAAGTCAAGT-GGGCAGATA  942
       || |||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CCCTTTTATGTGTGTCTGACTTTAAATTTAAAAGTCAAGTGGGGCAGATT  949

seq1  TTTACTGAGTGTTTAATACACTTCTTGTTTTATAAAATA  981
      ||||||||||||||||| || ||||||||||||||||||
seq2  TTTACTGAGTGTTTAAT-CATTTCTTGTTTTATAAAATA  987

seq1: chr12_50436946_50437237
seq2: B6Ng01-172L18.g_455_564 (reverse)

seq1  AAACAACAACAAAACAACACACAAACAGCAAACAGGATAGCATGAACATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGAACAAATGAACAAAGCTAAGCTAATAGAGTGGGGAACCCACAAGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTCAGACAAGTATATCTTCTTGACTCATTTCAAAGTTGCCAAAATCA  150
                               |  ||   |||      ||||| ||
seq2  -------------------------AAACA--ACAA------CAAAA-CA  16

seq1  TGCAATCAAGAAATGACAGCCTCTTCAGCTACTAGTGCTGGGGATGACTA  200
        ||| ||| ||| |||  ||    ||     ||| ||            
seq2  AACAAACAA-AAAGGAC--CC----CA-----TAG-GC------------  41

seq1  TCTGTAATTTGAATGCTTGGCCTAGGGAGTGGCACTATTAGGAGGTGTGG  250
      ||   |||| ||| |                     ||||||||||||||
seq2  TCAACAATTAGAAGG---------------------ATTAGGAGGTGTGG  70

seq1  TCTTGTTGGAGGAAGTGTGTAACTGTGGGGTTAGGCTTTGAG  292
       |||||||||||| |||||||||||||||  | |||||||||
seq2  CCTTGTTGGAGGATGTGTGTAACTGTGGG--TGGGCTTTGAG  110