BAC Information

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BAC

Clone NameB6Ng01-172O22
Chromosome1 (Build37)
Map Location 24,586,022 - 24,769,426
singlet/doubletdoublet
Overlap geneCol19a1, LOC100040475, LOC665829, Lmbrd1
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172O22.bB6Ng01-172O22.g
ACCGA001420GA001421
length3971,142
definitionB6Ng01-172O22.b B6Ng01-172O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,769,024 - 24,769,426)(24,586,022 - 24,587,105)
sequence
acagtatgtgtctgttttaggacacattaagtaatagtttagaacagttt
aatatactagatatcttacacatctaggaagtagatgagggcaatgagat
tagaaatcaggaacacttgggctggaactggaggaagggctcatcaatta
agagcattttttgctcatccaaaagacccagattcaatttctagatccta
tacaacagcagttaatagctctcaaaactcttgcagaggactagagttgg
tgtggttcctagcaaccacattggaggactcacagacaactctaacagca
gctccaggggatccaatgcctctgacctccacaagtatctgtagtattct
catggacatctatgtacaccctccccgtgtgtgtgtgtgtgtgtgtg
gaattcagtcttgacatcgcccaacaaattccttaagctgctcagagaat
gacagaatttagcatcaaccttacttatcaaaagtgttttcagtttaaga
tcatatgacttagttgatcaaatgtttacgtgtgagcctctgaccactat
ctcacagcaagatcagcagaaacttaagcaagaatctgttcactctccat
cctaactcaatcacttatggaatttccaatagccaagccttcctcccttt
gaaaatggtcactgggttctttaacttcacagtacctagactcccttctc
atcttccttcagatccactatttcctacttgacttcttctgtctctctgt
ttgctgcctatctatctatctatctatctatctatctatctatctatcta
cctatatatatatatatatatatatatatcatataactatcatctatcta
tgatctatatatgtatttgtcatttatcatctataaatcaatcaatctgt
ctataatctatcatctatcatctttctgtcatctatcatatagctgtcta
tcatctatctatgatctatatatgtatctataatctataaatcaatcaat
ctctctgtctatactccatcgtctatccattttctatctatcatctatct
atgcatccatccatccatccatccatccatctacctgtctatcttctatc
cagtttgaatatctcattttacattttccacttctccattttcactagca
atattttctaaattttctaataagttatttgctgggttggtccccaaata
aaattgcaatggggaagcactgtctgagcctgtcctttttccttctttcc
tgtcactgcccctcagacacaaggtggcgctccaggcttgctgggacaat
tcccctagttttcccaaccttgggaagttctttcatgccttgggctttta
acccaaaacctcctttattcagaatgtgtggcacctttttctaaccttaa
tccccttcaagtctcagccaaggggaatatatccaggtagcctttaataa
aattactttcaagccaattgttattatttactttaagtgtggctgatcct
tccaggggtcaagaaaagtctttaagaaacgaggcaccgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24769024_24769426
seq2: B6Ng01-172O22.b_44_446 (reverse)

seq1  CACACACACACACACACACACGGGGAGGGTGTACATAGATGTCCATGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACGGGGAGGGTGTACATAGATGTCCATGAGA  50

seq1  ATACTACAGATACTTGTGGAGGTCAGAGGCATTGGATCCCCTGGAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACAGATACTTGTGGAGGTCAGAGGCATTGGATCCCCTGGAGCTGC  100

seq1  TGTTAGAGTTGTCTGTGAGTCCTCCAATGTGGTTGCTAGGAACCACACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGTTGTCTGTGAGTCCTCCAATGTGGTTGCTAGGAACCACACCA  150

seq1  ACTCTAGTCCTCTGCAAGAGTTTTGAGAGCTATTAACTGCTGTTGTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTCCTCTGCAAGAGTTTTGAGAGCTATTAACTGCTGTTGTATAG  200

seq1  GATCTAGAAATTGAATCTGGGTCTTTTGGATGAGCAAAAAATGCTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGAAATTGAATCTGGGTCTTTTGGATGAGCAAAAAATGCTCTTAA  250

seq1  TTGATGAGCCCTTCCTCCAGTTCCAGCCCAAGTGTTCCTGATTTCTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGCCCTTCCTCCAGTTCCAGCCCAAGTGTTCCTGATTTCTAATC  300

seq1  TCATTGCCCTCATCTACTTCCTAGATGTGTAAGATATCTAGTATATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCCTCATCTACTTCCTAGATGTGTAAGATATCTAGTATATTAAA  350

seq1  CTGTTCTAAACTATTACTTAATGTGTCCTAAAACAGACACATACTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTAAACTATTACTTAATGTGTCCTAAAACAGACACATACTGTGAA  400

seq1  TTC  403
      |||
seq2  TTC  403

seq1: chr1_24586022_24587105
seq2: B6Ng01-172O22.g_64_1205

seq1  GAATTCAGTCTTGACATCGCCCAACAAATTCCTTAAGCTGCTCAGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTGACATCGCCCAACAAATTCCTTAAGCTGCTCAGAGAAT  50

seq1  GACAGAATTTAGCATCAACCTTACTTATCAAAAGTGTTTTCAGTTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTTAGCATCAACCTTACTTATCAAAAGTGTTTTCAGTTTAAGA  100

seq1  TCATATGACTTAGTTGATCAAATGTTTACGTGTGAGCCTCTGACCACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGACTTAGTTGATCAAATGTTTACGTGTGAGCCTCTGACCACTAT  150

seq1  CTCACAGCAAGATCAGCAGAAACTTAAGCAAGAATCTGTTCACTCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCAAGATCAGCAGAAACTTAAGCAAGAATCTGTTCACTCTCCAT  200

seq1  CCTAACTCAATCACTTATGGAATTTCCAATAGCCAAGCCTTCCTCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCAATCACTTATGGAATTTCCAATAGCCAAGCCTTCCTCCCTTT  250

seq1  GAAAATGGTCACTGGGTTCTTTAACTTCACAGTACCTAGACTCCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGTCACTGGGTTCTTTAACTTCACAGTACCTAGACTCCCTTCTC  300

seq1  ATCTTCCTTCAGATCCACTATTTCCTACTTGACTTCTTCTGTCTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTTCAGATCCACTATTTCCTACTTGACTTCTTCTGTCTCTCTGT  350

seq1  TTGCTGC----CTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  396
      |||||||    |||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  400

seq1  CCTATATATATATATATATATATATATATCATATAACTATCATCTATCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATATATATATATATATATATATATCATATAACTATCATCTATCTA  450

seq1  TGATCTATATATGTATTTGTCATTTATCATCTATAAATCAATCAATCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATATATGTATTTGTCATTTATCATCTATAAATCAATCAATCTGT  500

seq1  CTATAATCTATCATCTATCATCTTTCTGTCATCTATCATATAGCTGTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATCTATCATCTATCATCTTTCTGTCATCTATCATATAGCTGTCTA  550

seq1  TCATCTATCTATGATCTATATATGTATCTATAATCTATAAATCAATCAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCTATGATCTATATATGTATCTATAATCTATAAATCAATCAAT  600

seq1  CTCTCTGTCTATACTCCATCGTCTATCCATTTTCTATCTATCATCTATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTATACTCCATCGTCTATCCATTTTCTATCTATCATCTATCT  650

seq1  ATGCATCCATCCATCCATCCATCCATCCATCTACCTGTCTATCTTCTATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCCATCCATCCATCCATCCATCCATCTACCTGTCTATCTTCTATC  700

seq1  CAG-TTGAATATCTCA-TTTACATTTTCCACTTCTCCA-TTTCACTAGCA  743
      ||| |||||||||||| ||||||||||||||||||||| |||||||||||
seq2  CAGTTTGAATATCTCATTTTACATTTTCCACTTCTCCATTTTCACTAGCA  750

seq1  ATATTTTCTAAATTTTCTAATAAGTTATTTGCTGGGTTGGT-CCCAAATA  792
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATTTTCTAAATTTTCTAATAAGTTATTTGCTGGGTTGGTCCCCAAATA  800

seq1  AAATTGCAAT-GGGAAGCACTGTCTGAGCCTGTCCTTTT--CCTCTTTCC  839
      |||||||||| ||||||||||||||||||||||||||||  | |||||||
seq2  AAATTGCAATGGGGAAGCACTGTCTGAGCCTGTCCTTTTTCCTTCTTTCC  850

seq1  TGTCACTG-CCCTCAGACAC-AGGTGGCGCT-CAGGC-TGCT-GGACA--  882
      |||||||| ||||||||||| |||||||||| ||||| |||| |||||  
seq2  TGTCACTGCCCCTCAGACACAAGGTGGCGCTCCAGGCTTGCTGGGACAAT  900

seq1  TTCCCTAGTTT--CCCACCTTGG--AGTTC-TTCATGC--TTGGCTTT--  923
      | |||||||||  || |||||||  ||||| |||||||  | ||||||  
seq2  TCCCCTAGTTTTCCCAACCTTGGGAAGTTCTTTCATGCCTTGGGCTTTTA  950

seq1  AACCAAAACC-CCTT--ATCAGAA--TGTGGCAC--TTTTCT-ACCTT-A  964
      | |||||||| ||||   ||||||  ||||||||  |||||| ||||| |
seq2  ACCCAAAACCTCCTTTATTCAGAATGTGTGGCACCTTTTTCTAACCTTAA  1000

seq1  TCCCC-TCAGGTCTCAG-CAAGGGGATTAT---CAGGTAG-CTTTA--TA  1006
      ||||| ||| ||||||| |||||||| |||   ||||||| |||||   |
seq2  TCCCCTTCAAGTCTCAGCCAAGGGGAATATATCCAGGTAGCCTTTAATAA  1050

seq1  AATTAC-TTCAAGCC-ATTGTTAT--ATTACTT--AGTGT-GCTGTTC--  1047
      |||||| |||||||| ||||||||   ||||||  ||||| |||| ||  
seq2  AATTACTTTCAAGCCAATTGTTATTATTTACTTTAAGTGTGGCTGATCCT  1100

seq1  TTCACAGGTCAAGAAA--GCTTTAAGA---CAGGCACCGCCA  1084
      | ||  ||||||||||   ||||||||    |||||||| ||
seq2  TCCAGGGGTCAAGAAAAGTCTTTAAGAAACGAGGCACCGACA  1142