BAC Information

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BAC

Clone NameB6Ng01-173C07
Chromosome1 (Build37)
Map Location 194,588,401 - 194,723,789
singlet/doubletdoublet
Overlap geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14
Upstream geneLpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
Downstream geneAA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C07.bB6Ng01-173C07.g
ACCGA001573GA001574
length1,1191,149
definitionB6Ng01-173C07.b B6Ng01-173C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,588,401 - 194,589,514)(194,722,657 - 194,723,789)
sequence
gaattctgtataaacagagaggccatcttttcaagagtagaagggaagtt
ttcttggtgttttagcctatctcctgtcacagaagacggaggctgcacta
gatgtctgtctcctctcatgaagaattgtaattgtaaagtgttcctaaaa
aatgcttctgtaatctgaacataaataaccttgtgcgttttgggaaattt
ctagaagccctgcttgttcaaagatccctctatcttgagcaatgcctcta
tgtgaaggatttacctgtgaaggactcgtttttataacatttctttttgc
tgcagtctcagctgtattatacacgaggtgatcatatgcacgcatgcata
gcattaataattatcaggaaagcagtagcattgtctcccccagcacacct
aaaatctggatctggtccccacagcttccacccaagggcacagaggaact
cagaactcagccatgggctgattgaaccacacatgcgaaagtagccagct
cccagatgcccatggggctggtggatgggttagatgaaaactacttagcc
cagggccagccctaagcactctagagacattggcagctactagttggtga
tttaatgcatcattagcctacctggctgaggccctgagtggaagaaatcc
aactaaaagcagctaacctgaccacagccacccccacctgctcctcttct
cctccagcagtcggcagccctcaagtcttctttggggccactcttcttcc
ttttcccatgctcagcccaggccccccactccttgaacagcatgtaaatg
gtcttggagctaccactttcctgtacaatagaccatgccctcaaatggtg
agccaagaaaaacgctcttccttaaattgcttgtcagagtattctatcac
atcaataggaaacgaaatcaacgcccactcagtgcttgcctgcactgcag
atggtacagaaccttctgtacccaggcaacccttggttttaagagggcac
tgcatcccactaaacccaagctaaaataccctctcaacaccactcaaaga
atttctaagtcaactatttttcagtcaggatcatttgttcctatcaatat
cctgttctagaatagccac
gaattccatgggccaagagatgtccaaatgcaagacatccacccgcagag
ggcagccaaatccggtgtacaaggaaacttttgtttttcaagtggccttg
tttcagctttctgacgtgactctgatactgtctgtgtataacaggcggag
catgaaaaggaaggagatgataggctggatttccttaggtctaaacagct
ctggggaggaggagctcagacactggactgcaatgaaggagtcgaaggga
cagcaagtgtgcaggtggcacgcactgctggagtcctgaggaagtcggaa
gacggctgcaagcccagcactgcctcagaggagccgttccctggagagtc
ctcttcaacaccctaccacaacgcttcacatcagcgagggaccatccagt
gctgcctgaggggaaggaagctttgcctctggtagagcgagctcacatga
gaaaccaagaaacttgtgtccttaatgctcagcagccctccagaaattga
attgcatactctttatttgaacttgattttcttagtgaaagagctaggaa
ttccgtggagattgtggctttaaaccagagtttccattgcagcactacat
atcatcacccacatgctgtccatgagacatctctatggccagtccttggg
tggatctcagtgagcactcctgtctcaaggtgaaagctcactcacactaa
tgatactttcatttcagatatgctctctctgtgcctcagccttcatagta
ctaagccaagtgcaaaattccctgaagagtagtttaaggttggtttgttt
gacgtttgtttctttacctcctttgttttttctgatccaaagagaccatg
ttcttatggtcccttgcaaacctttatgactgtcctgcagaacttcataa
ctttacgttcaagtccctttatgtaccatgtgtcccagagtagaaaatgg
ttaagagcagagctgtcatttggaaattgctttcagtggtcagtcctttt
acagctggtgcaatgccagcagacacagtagaatagcttgtttgtaaatt
ggaagaacaactctagtttaaaggattcttggatatctgttccagaatct
agtctctcaacaggagtaaaacagggtagccatttcaaaacgagaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194588401_194589514
seq2: B6Ng01-173C07.b_44_1162

seq1  GAATTCTGTATAAACAGAGAGGCCATCTTTTCAAGAGTAGAAGGGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATAAACAGAGAGGCCATCTTTTCAAGAGTAGAAGGGAAGTT  50

seq1  TTCTTGGTGTTTTAGCCTATCTCCTGTCACAGAAGACGGAGGCTGCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGTTTTAGCCTATCTCCTGTCACAGAAGACGGAGGCTGCACTA  100

seq1  GATGTCTGTCTCCTCTCATGAAGAATTGTAATTGTAAAGTGTTCCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGTCTCCTCTCATGAAGAATTGTAATTGTAAAGTGTTCCTAAAA  150

seq1  AATGCTTCTGTAATCTGAACATAAATAACCTTGTGCGTTTTGGGAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTGTAATCTGAACATAAATAACCTTGTGCGTTTTGGGAAATTT  200

seq1  CTAGAAGCCCTGCTTGTTCAAAGATCCCTCTATCTTGAGCAATGCCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCCCTGCTTGTTCAAAGATCCCTCTATCTTGAGCAATGCCTCTA  250

seq1  TGTGAAGGATTTACCTGTGAAGGACTCGTTTTTATAACATTTCTTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGATTTACCTGTGAAGGACTCGTTTTTATAACATTTCTTTTTGC  300

seq1  TGCAGTCTCAGCTGTATTATACACGAGGTGATCATATGCACGCATGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTCAGCTGTATTATACACGAGGTGATCATATGCACGCATGCATA  350

seq1  GCATTAATAATTATCAGGAAAGCAGTAGCATTGTCTCCCCCAGCACACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATAATTATCAGGAAAGCAGTAGCATTGTCTCCCCCAGCACACCT  400

seq1  AAAATCTGGATCTGGTCCCCACAGCTTCCACCCAAGGGCACAGAGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGGATCTGGTCCCCACAGCTTCCACCCAAGGGCACAGAGGAACT  450

seq1  CAGAACTCAGCCATGGGCTGATTGAACCACACATGCGAAAGTAGCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCAGCCATGGGCTGATTGAACCACACATGCGAAAGTAGCCAGCT  500

seq1  CCCAGATGCCCATGGGGCTGGTGGATGGGTTAGATGAAAACTACTTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCCCATGGGGCTGGTGGATGGGTTAGATGAAAACTACTTAGCC  550

seq1  CAGGGCCAGCCCTAAGCACTCTAGAGACATTGGCAGCTACTAGTTGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGCCCTAAGCACTCTAGAGACATTGGCAGCTACTAGTTGGTGA  600

seq1  TTTAATGCATCATTAGCCTACCTGGCTGAGGCCCTGAGTGGAAGAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCATCATTAGCCTACCTGGCTGAGGCCCTGAGTGGAAGAAATCC  650

seq1  AACTAAAAGCAGCTAACCTGACCACAGCCACCCCCACCTGCTCCTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGCAGCTAACCTGACCACAGCCACCCCCACCTGCTCCTCTTCT  700

seq1  CCTCCAGCAGTCGGCAGCCCTCAAGTCTTCTTTGGGGCCACTCTTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCAGTCGGCAGCCCTCAAGTCTTCTTTGGGGCCACTCTTCTTCC  750

seq1  TTTTCCCATGCTCAGCCCAGGCCCCCCACTCCTTGAACAGCATGTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGCTCAGCCCAGGCCCCCCACTCCTTGAACAGCATGTAAATG  800

seq1  GTCTTGGAGCTACCACTTTCCTGTACAATAGACCATGCCCTCAAATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGAGCTACCACTTTCCTGTACAATAGACCATGCCCTCAAATGGTG  850

seq1  AGCCAAGAAAAACGCTCTTCCTTAAATTGCTTGTCAGAGTATTCTATCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAAAAACGCTCTTCCTTAAATTGCTTGTCAGAGTATTCTATCAC  900

seq1  ATCAATAGGAAACGAAACCAACGCCCACTCAGTGCTTGCCTGCAACTGCA  950
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  ATCAATAGGAAACGAAATCAACGCCCACTCAGTGCTTGCCTGC-ACTGCA  949

seq1  GATGGTACAGAACCTTCTGTACCCAGGCAACCC-TGGTTTT-AGAGGGCA  998
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GATGGTACAGAACCTTCTGTACCCAGGCAACCCTTGGTTTTAAGAGGGCA  999

seq1  CTGCATCCCACTAAACCCAAGCTAAAAATACCCTCTCAACACCACTCAAA  1048
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGCATCCCACTAAACCCAAGCT-AAAATACCCTCTCAACACCACTCAAA  1048

seq1  GAA-TTCTAAGTCAAACTA-TTTTCAGTCAGGATCATTTGTT-CTATC-A  1094
      ||| ||||||||| ||||| |||||||||||||||||||||| ||||| |
seq2  GAATTTCTAAGTC-AACTATTTTTCAGTCAGGATCATTTGTTCCTATCAA  1097

seq1  TATCCTG-TCTAG-ATAGCCAC  1114
      ||||||| ||||| ||||||||
seq2  TATCCTGTTCTAGAATAGCCAC  1119

seq1: chr1_194722657_194723789
seq2: B6Ng01-173C07.g_69_1217 (reverse)

seq1  AGATTCT-GTTTTGAA--TGCTA-CCTGTTTTACTCCTGTTG-GAGACTA  45
      ||||||| ||||||||   |||| |||||||||||||||||| |||||||
seq2  AGATTCTCGTTTTGAAATGGCTACCCTGTTTTACTCCTGTTGAGAGACTA  50

seq1  GATTCTTGGAACAGATAATCAAGATTCCTTTTAACTAGAGTTG-TCTTCC  94
      ||||| |||||||||||  ||||| |||||| ||||||||||| ||||||
seq2  GATTC-TGGAACAGATATCCAAGAATCCTTTAAACTAGAGTTGTTCTTCC  99

seq1  AATTT-CAA--CAGCTA-TCTACTGTGTCTGCT-GCATTGCA-CAGCTGT  138
      ||||| |||   ||||| ||||||||||||||| |||||||| |||||||
seq2  AATTTACAAACAAGCTATTCTACTGTGTCTGCTGGCATTGCACCAGCTGT  149

seq1  AAA--GACTGACCACTGAAAGCAA-TTCCAAATGACAGCTCTGCTCTT-A  184
      |||  ||||||||||||||||||| ||||||||||||||||||||||| |
seq2  AAAAGGACTGACCACTGAAAGCAATTTCCAAATGACAGCTCTGCTCTTAA  199

seq1  CCATTTTCTACTCTGGGACACATGGTACATAAA-GGACTTGAACGTAAAG  233
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATTTTCTACTCTGGGACACATGGTACATAAAGGGACTTGAACGTAAAG  249

seq1  TTATGAAGTTCTGCAGGACAGTCATAAAGGTTTGCAAGGGACCATAAGAA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTTCTGCAGGACAGTCATAAAGGTTTGCAAGGGACCATAAGAA  299

seq1  CATGGTCTCTTTGGATCAGAAAAAACAAAGGAGGTAAAGAAACAAACGTC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTCTTTGGATCAGAAAAAACAAAGGAGGTAAAGAAACAAACGTC  349

seq1  AAACAAACCAACCTTAAACTACTCTTCAGGGAATTTTGCACTTGGCTTAG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCAACCTTAAACTACTCTTCAGGGAATTTTGCACTTGGCTTAG  399

seq1  TACTATGAAGGCTGAGGCACAGAGAGAGCATATCTGAAATGAAAGTATCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAAGGCTGAGGCACAGAGAGAGCATATCTGAAATGAAAGTATCA  449

seq1  TTAGTGTGAGTGAGCTTTCACCTTGAGACAGGAGTGCTCACTGAGATCCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGAGTGAGCTTTCACCTTGAGACAGGAGTGCTCACTGAGATCCA  499

seq1  CCCAAGGACTGGCCATAGAGATGTCTCATGGACAGCATGTGGGTGATGAT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGACTGGCCATAGAGATGTCTCATGGACAGCATGTGGGTGATGAT  549

seq1  ATGTAGTGCTGCAATGGAAACTCTGGTTTAAAGCCACAATCTCCACGGAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGCTGCAATGGAAACTCTGGTTTAAAGCCACAATCTCCACGGAA  599

seq1  TTCCTAGCTCTTTCACTAAGAAAATCAAGTTCAAATAAAGAGTATGCAAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCTCTTTCACTAAGAAAATCAAGTTCAAATAAAGAGTATGCAAT  649

seq1  TCAATTTCTGGAGGGCTGCTGAGCATTAAGGACACAAGTTTCTTGGTTTC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTGGAGGGCTGCTGAGCATTAAGGACACAAGTTTCTTGGTTTC  699

seq1  TCATGTGAGCTCGCTCTACCAGAGGCAAAGCTTCCTTCCCCTCAGGCAGC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAGCTCGCTCTACCAGAGGCAAAGCTTCCTTCCCCTCAGGCAGC  749

seq1  ACTGGATGGTCCCTCGCTGATGTGAAGCGTTGTGGTAGGGTGTTGAAGAG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGGTCCCTCGCTGATGTGAAGCGTTGTGGTAGGGTGTTGAAGAG  799

seq1  GACTCTCCAGGGAACGGCTCCTCTGAGGCAGTGCTGGGCTTGCAGCCGTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCAGGGAACGGCTCCTCTGAGGCAGTGCTGGGCTTGCAGCCGTC  849

seq1  TTCCGACTTCCTCAGGACTCCAGCAGTGCGTGCCACCTGCACACTTGCTG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGACTTCCTCAGGACTCCAGCAGTGCGTGCCACCTGCACACTTGCTG  899

seq1  TCCCTTCGACTCCTTCATTGCAGTCCAGTGTCTGAGCTCCTCCTCCCCAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCGACTCCTTCATTGCAGTCCAGTGTCTGAGCTCCTCCTCCCCAG  949

seq1  AGCTGTTTAGACCTAAGGAAATCCAGCCTATCATCTCCTTCCTTTTCATG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTAGACCTAAGGAAATCCAGCCTATCATCTCCTTCCTTTTCATG  999

seq1  CTCCGCCTGTTATACACAGACAGTATCAGAGTCACGTCAGAAAGCTGAAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCTGTTATACACAGACAGTATCAGAGTCACGTCAGAAAGCTGAAA  1049

seq1  CAAGGCCACTTGAAAAACAAAAGTTTCCTTGTACACCGGATTTGGCTGCC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACTTGAAAAACAAAAGTTTCCTTGTACACCGGATTTGGCTGCC  1099

seq1  CTCTGCGGGTGGATGTCTTGCATTTGGACATCTCTTGGCCCATGGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCGGGTGGATGTCTTGCATTTGGACATCTCTTGGCCCATGGAATTC  1149