BAC Information

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BAC

Clone NameB6Ng01-173D13
Chromosome1 (Build37)
Map Location 42,114,143 - 42,115,301
singlet/doubletsinglet
Overlap geneLOC383634
Upstream geneLOC100041441
Downstream geneLOC666582, 2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173D13.bB6Ng01-173D13.g
ACCGA001627GA001628
length1,159658
definitionB6Ng01-173D13.b B6Ng01-173D13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatctattataaaaatcaacggatagcagcctgctctctatctc
tctctaactttgtgttaaatgagaaaaggctaggtcagctgatttatctt
tcatgttccctggccattgagactagcattgaagtaaaatgctccaggaa
aatcagatttgctgccaaccttgaggaactaatagagtttcctttaccat
gctagaataaaaacagttatatagaacgagtagttgttttttaatacgct
acttagtgcttgtatttttatgaaaatgttgcttaatccctgcgcttaat
ttcatatatgtgcataatcaggataatagttccagctggccaaatatact
agaagtcagattattgaatgtgagtcagctgtttctgcaaacagcaaggc
cttttgttgacttcagggattccagaacaaggagagtacatagcagagaa
tagagcacccataaatgtacctctttttaaatttaaattattttattcca
ttccagtcattgccctgcctcagtcctccgtcccacagctcctcaccctt
gtctccaagaaggtgcttcccgtgccctccccacacaccaaacctccctc
ttccctcgggcctcagggttcttgaggattgcatgtcttcttccaccgag
accagaccaggtagacctctgctatatatatgccaggagcctccgaccag
cccgtgtatgcccctggttggtggctcagtctctgggagctcccaggggt
gtgggttagttgagactgctggtctttctatggggtcactctccctttca
gcttctttaatccttcccctaattcaatcacagggggtacccaacttcat
ccaatgggttgggtgtaaatatctgcttctgtcacagtcagctgctgggt
agggcctctctgaagacagccatgtcaggcttctgtttgtaagcacatca
aacatgccaaggccttgatgtccccaccatgagatggataccaagttcag
ctggtccataggcatttcttagaagggaacaaacactttcacctcactca
gagtactgcatcatattctctactgccaatgatcaaacgtcatgagcagc
accttacagaagaaagaaattatttttgggctcaagctcgagagtcttag
gcatgatgg

gaattctattcagcactaaggaaaaatggatggaattagaaatcattaca
ctgagcaagataaccctgtttcaaaagacaaatttctcccacatatgtgg
atcaagtatttgaatttttaaatgattgtgtttaagctggtgtctgtaga
ggcgagtagacagtaaaggaaccacgggaaatgagaggagggggaggggt
ctgaaggtagaaggaggttagtaatacaccagtaatatagaaatactaag
gggatattcggaatgggaagttatcaacaggggtggactagggagtggac
atggatgtggagcacagggacatttaaccaaaattaagagtgatggtttg
tatatgcttagcccaaggagtagcaacgtttggaggtgtggccttgttgg
agtaggtatcaccttgttgaagtaggtgtttcactgtgagtgtgggcttt
aattccctagttctagctgtctggaagccagtattctgctagcagtcttc
agatgaagatgtagaactctcatttcctcctgtactatgcctgcctggat
gcaccatgcttcctgccttgatgataatggactgaatcactgaacctgta
agccagcccacaatttaaatgtccttatgaaagttgcctttggtcatggg
tggctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42114143_42115301
seq2: B6Ng01-173D13.b_37_1195

seq1  GAATTCAATCTATTATAAAAATCAACGGATAGCAGCCTGCTCTCTATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTATTATAAAAATCAACGGATAGCAGCCTGCTCTCTATCTC  50

seq1  TCTCTAACTTTGTGTTAAATGAGAAAAGGCTAGGTCAGCTGATTTATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACTTTGTGTTAAATGAGAAAAGGCTAGGTCAGCTGATTTATCTT  100

seq1  TCATGTTCCCTGGCCATTGAGACTAGCATTGAAGTAAAATGCTCCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCCTGGCCATTGAGACTAGCATTGAAGTAAAATGCTCCAGGAA  150

seq1  AATCAGATTTGCTGCCAACCTTGAGGAACTAATAGAGTTTCCTTTACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATTTGCTGCCAACCTTGAGGAACTAATAGAGTTTCCTTTACCAT  200

seq1  GCTAGAATAAAAACAGTTATATAGAACGAGTAGTTGTTTTTTAATACGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATAAAAACAGTTATATAGAACGAGTAGTTGTTTTTTAATACGCT  250

seq1  ACTTAGTGCTTGTATTTTTATGAAAATGTTGCTTAATCCCTGCGCTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGCTTGTATTTTTATGAAAATGTTGCTTAATCCCTGCGCTTAAT  300

seq1  TTCATATATGTGCATAATCAGGATAATAGTTCCAGCTGGCCAAATATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATGTGCATAATCAGGATAATAGTTCCAGCTGGCCAAATATACT  350

seq1  AGAAGTCAGATTATTGAATGTGAGTCAGCTGTTTCTGCAAACAGCAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCAGATTATTGAATGTGAGTCAGCTGTTTCTGCAAACAGCAAGGC  400

seq1  CTTTTGTTGACTTCAGGGATTCCAGAACAAGGAGAGTACATAGCAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGACTTCAGGGATTCCAGAACAAGGAGAGTACATAGCAGAGAA  450

seq1  TAGAGCACCCATAAATGTACCTCTTTTTAAATTTAAATTATTTTATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCACCCATAAATGTACCTCTTTTTAAATTTAAATTATTTTATTCCA  500

seq1  TTCCAGTCATTGCCCTGCCTCAGTCCTCCGTCCCACAGCTCCTCACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCATTGCCCTGCCTCAGTCCTCCGTCCCACAGCTCCTCACCCTT  550

seq1  GTCTCCAAGAAGGTGCTTCCCGTGCCCTCCCCACACACCAAACCTCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAGAAGGTGCTTCCCGTGCCCTCCCCACACACCAAACCTCCCTC  600

seq1  TTCCCTCGGGCCTCAGGGTTCTTGAGGATTGCATGTCTTCTTCCACCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCGGGCCTCAGGGTTCTTGAGGATTGCATGTCTTCTTCCACCGAG  650

seq1  ACCAGACCAGGTAGACCTCTGCTATATATATGCCAGGAGCCTCCGACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACCAGGTAGACCTCTGCTATATATATGCCAGGAGCCTCCGACCAG  700

seq1  CCCGTGTATGCCCCTGGTTGGTGGCTCAGTCTCTGGGAGCTCCCAGGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTATGCCCCTGGTTGGTGGCTCAGTCTCTGGGAGCTCCCAGGGGT  750

seq1  GTGGGTTAGTTGAGACTGCTGGTCTTTCTATGGGGTCACTCTCCCTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTAGTTGAGACTGCTGGTCTTTCTATGGGGTCACTCTCCCTTTCA  800

seq1  GCTTCTTTAATCCTTCCCCTAATTCAATCACA-GGGGTACCCAACTTCAA  849
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GCTTCTTTAATCCTTCCCCTAATTCAATCACAGGGGGTACCCAACTTC-A  849

seq1  TCCAAT-GGTTGGGTGTAAATATCTGCTTCTGTCACAGTCAGCTGCT-GG  897
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCAATGGGTTGGGTGTAAATATCTGCTTCTGTCACAGTCAGCTGCTGGG  899

seq1  TAGGGCCTCTCTGAAGACAGCCATGTCAGGCTTCTGTTTGTAAGCACATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTCTCTGAAGACAGCCATGTCAGGCTTCTGTTTGTAAGCACATC  949

seq1  AAACATGCC-AGGCCTTGATGTCCCCACCATGAGATGGATACCAAGTTCA  996
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCCAAGGCCTTGATGTCCCCACCATGAGATGGATACCAAGTTCA  999

seq1  GCTGGTCCATAGGCATTTCTTAG-AGGGAACAAACAC-TTCACCTCACTC  1044
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GCTGGTCCATAGGCATTTCTTAGAAGGGAACAAACACTTTCACCTCACTC  1049

seq1  AGAGTTACTGCATTCATTATTCTCTACTGCC-ATGATCAAACGTCATGAG  1093
      |||| ||||||| ||| |||||||||||||| ||||||||||||||||||
seq2  AGAG-TACTGCA-TCA-TATTCTCTACTGCCAATGATCAAACGTCATGAG  1096

seq1  CAAGGCAACTTACAGAAGAAAG-AATTA--TTTGGGCTCAAAGCTCGAGA  1140
      ||  ||| |||||||||||||| |||||  ||||||||| ||||||||||
seq2  CA--GCACCTTACAGAAGAAAGAAATTATTTTTGGGCTC-AAGCTCGAGA  1143

seq1  GTCTTAGGGCCCATGATGG  1159
      ||||||||   ||||||||
seq2  GTCTTAGG---CATGATGG  1159


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