BAC Information

Click to search

BAC

Clone NameB6Ng01-173D21
Chromosome1 (Build37)
Map Location 103,362,036 - 103,362,854
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173D21.bB6Ng01-173D21.g
ACCGA001641GA001642
length1,0201,186
definitionB6Ng01-173D21.b B6Ng01-173D21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattccccattcccgagctaagaatcagttattctgtagagtga
tagatattgaatcctaaggtaatggaaggataaataaatacttaagtaaa
acaattaattaaaaaacaaaaacaaagtaagtccatgcattggaactgaa
ttaactctcaagagtattgagtgcttcagaaggaacagggaagacaagaa
tagaaactagtaaaagaaggaatttaaggaatttagcaacataggtgcaa
ctgatcctctgcagaacagtttcagaatgacataatataaacaactcaag
atgatgaaaatataacttaatgacgagatagaatctcagaagaaggatct
aaaagaaacacaacctcaggtattcattcaaaaattcagaagaaacttca
aaaatagcctggaataaccagaacagagaagaacataaggtcttgaaact
gaagttgaaaaattggatcacaccgttatagaaaatgttaaattaaaaca
aatacacaaacaacccatgagcagagcatgtgaatattctggaacactag
aaaagactatacctgtccattgtaagtcaaaagggaataaagagaatcag
gtcaaaggcacagtaaatacttgtatgaaaatcattgaaggaaacttact
gaatgtaagaatgaaataacttgcagaataaaacctaggttttcaatgaa
gtctgtgaaaatctgagggcttaaagttacactacaaatcacaacaaacc
ataaatgttagccaagaatataaaacaaagaaaaactatctattgtaata
aaaggaaatgaaaactttccatgaaaaaggcatagttttaaggagtttat
gaccatgctagctaggttataggggctagtagaaaaaacagtttgttcta
aagagaagattaaacaagtcaaataaatacagcagataagtaagacaatt
ccaaataatcaaaatggtggaataatgaaatactacaatgcaaaagctga
gaagacatttaattatgcat

gaattctcacctgacgaataccgaatggcggagatgaacctgaaaagatg
ttcagcatccttaaccatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaagataaaaaattcaggtgacagc
aaatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatcctgcaatacctctgctgggc
atttatccagaagatgttccaaccagtaagaaagacacatgctccactat
gttcatagcagtcttatttataagagccaggagctggaaagaacccagac
atccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaattatgaaattgctaggcaaa
tggatggacctggagggcatcatcctgagtgagataacccaattccaaag
gaacttacacaatatgtactcactgataagtggatattaacccagatagt
tagtgttcccaagatataagatacaatttgtgaaacacaaaaaaatgaag
aagaatgaagaccaaagtgtggacactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagttggggagctttgacg
aaaggatggacaatctagagactgccatatccaagcatccatcccataat
cagcctccaaacactgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctgtctctttgtgagactatgccggagcctagcaa
acagaaattgggatgctcatagtcagctattggatggattacagggcccc
cccaatggaaggagctagagaagtatccaaggagctaaagggatctgtaa
ccctataggtggacaacaatattttactaacactaccccatgagctccgt
gttctctctagctgcatatgttattcaaaaaatgctagtttggcatcgat
gaaagagaaggtctcactggcttgcaacgtttaatgcctcagtacaggca
tcgccctagtgccctagaaatagtgtcggaaatcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103362036_103362854
seq2: B6Ng01-173D21.b_41_859 (reverse)

seq1  GAAAGTTTTCATTTCCTTTTATTACAATAGATAGTTTTTCTTTGTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTTCATTTCCTTTTATTACAATAGATAGTTTTTCTTTGTTTTAT  50

seq1  ATTCTTGGCTAACATTTATGGTTTGTTGTGATTTGTAGTGTAACTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCTAACATTTATGGTTTGTTGTGATTTGTAGTGTAACTTTAAG  100

seq1  CCCTCAGATTTTCACAGACTTCATTGAAAACCTAGGTTTTATTCTGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGATTTTCACAGACTTCATTGAAAACCTAGGTTTTATTCTGCAAG  150

seq1  TTATTTCATTCTTACATTCAGTAAGTTTCCTTCAATGATTTTCATACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATTCTTACATTCAGTAAGTTTCCTTCAATGATTTTCATACAAG  200

seq1  TATTTACTGTGCCTTTGACCTGATTCTCTTTATTCCCTTTTGACTTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTGTGCCTTTGACCTGATTCTCTTTATTCCCTTTTGACTTACAA  250

seq1  TGGACAGGTATAGTCTTTTCTAGTGTTCCAGAATATTCACATGCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGTATAGTCTTTTCTAGTGTTCCAGAATATTCACATGCTCTGCT  300

seq1  CATGGGTTGTTTGTGTATTTGTTTTAATTTAACATTTTCTATAACGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTGTTTGTGTATTTGTTTTAATTTAACATTTTCTATAACGGTGT  350

seq1  GATCCAATTTTTCAACTTCAGTTTCAAGACCTTATGTTCTTCTCTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAATTTTTCAACTTCAGTTTCAAGACCTTATGTTCTTCTCTGTTCT  400

seq1  GGTTATTCCAGGCTATTTTTGAAGTTTCTTCTGAATTTTTGAATGAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCCAGGCTATTTTTGAAGTTTCTTCTGAATTTTTGAATGAATAC  450

seq1  CTGAGGTTGTGTTTCTTTTAGATCCTTCTTCTGAGATTCTATCTCGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTGTGTTTCTTTTAGATCCTTCTTCTGAGATTCTATCTCGTCAT  500

seq1  TAAGTTATATTTTCATCATCTTGAGTTGTTTATATTATGTCATTCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATATTTTCATCATCTTGAGTTGTTTATATTATGTCATTCTGAAA  550

seq1  CTGTTCTGCAGAGGATCAGTTGCACCTATGTTGCTAAATTCCTTAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCAGAGGATCAGTTGCACCTATGTTGCTAAATTCCTTAAATTC  600

seq1  CTTCTTTTACTAGTTTCTATTCTTGTCTTCCCTGTTCCTTCTGAAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTACTAGTTTCTATTCTTGTCTTCCCTGTTCCTTCTGAAGCACT  650

seq1  CAATACTCTTGAGAGTTAATTCAGTTCCAATGCATGGACTTACTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCTTGAGAGTTAATTCAGTTCCAATGCATGGACTTACTTTGTTT  700

seq1  TTGTTTTTTAATTAATTGTTTTACTTAAGTATTTATTTATCCTTCCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTAATTAATTGTTTTACTTAAGTATTTATTTATCCTTCCATTA  750

seq1  CCTTAGGATTCAATATCTATCACTCTACAGAATAACTGATTCTTAGCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGATTCAATATCTATCACTCTACAGAATAACTGATTCTTAGCTCG  800

seq1  GGAATGGGGAATGGAATTC  819
      |||||||||||||||||||
seq2  GGAATGGGGAATGGAATTC  819


| Home | SequenceCutter | Blast | Download |