BAC Information

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BAC

Clone NameB6Ng01-173F04
Chromosome1 (Build37)
Map Location 51,117,024 - 51,118,120
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173F04.bB6Ng01-173F04.g
ACCGA001698GA001699
length1,2221,094
definitionB6Ng01-173F04.b B6Ng01-173F04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagctctgtttctcatttttcaatagggctatttggtt
ctctggagtctaactacttgaattctttgtatatattagataatagctct
ctatcagatgtaggattggtaaagatcttttcccaatctgttgcttgcct
gggagtggagtttcctctgagtgttatgggactggctctgcctttttgtc
ctattgacagtgtcctttgccttacagaagttttgcagttttatgagctc
ccttttgtcagtttttgatcttagagcataagccattggtgttctgttca
ggaacttttcccctgtgcccatgtgttcaaggttttcccctactttctct
tctattaaattcagtgtatctggttttatgtggaggtccttgatccacgt
agacttgagtttggtacagtgagataagaatggattaatttgcattcttt
tacatgttgactggcaattgaaccagcaccatttgttgaaaatgctgtct
ttttccactggatggttttaggtcctttgtctaagatcaagtgaccatag
gtatgtgggttcatttctgggtcttcaattctattcctttgatctacctg
cctgtcactgtatcaataccgtgcagtttttatcactattgctctgtagt
acagcttgagatcagggatggtgattctcccagaagttcttttattgttg
agaatagttttggctattctgtgtgttttgttattccaaacgaatttgag
aattgctctttctaactctgaagaattgagttggaattttgatggggatt
gcattgaatctgtaggttgctttcagaaagacggccatttttactatatt
aatcctgccaatccatgagcatgggggagctttccattttctgagttctt
ctgcaatttctttgttcagaaccttgaagttcttataatacagatcttaa
caagttgattagagtcacaccaagatatttttatattgtttatgactatt
gtggaggatgtcatttccctaatttctttctcagtcattgagttacaatt
ttaatatgccaaaatatggttttgatacattaaatacttggaagcccgaa
tgataagtacaactgcaggactgtaaaagaaagccaagatacctattgga
agtacctataacaggaaacataaagaatggcttggggcctggagaactcg
cgctatagtgagtatgcatgat

gaattccacagaccactgtatagattgctttagtttacattttctttgtt
tttccaggttgtgttagatggtcatgttttctttcatatttcaaataaaa
taaatctgaccatctgcattataaacttgagaatacattctcttcttgtt
tgtctcttcatgtgtatgttgatttgaattggtgtatatgagaacttttg
ccttcagttccagggctgcctcccttggctggttagaaggaggagcagta
tcaaagagagacttagcaattctcagaggtaggcccatagtcacactact
aagttgtgttcaaggggcaggtgtgaactagaagatgacagacagacgca
agtgactggagccggcagcaaagaagaaattgtaggaagaaagcaagatc
tcccaacagaaaataagcagaagtcatggatctgtcaactatttaacctc
atcataaacactacatcctgcctgcaatgttcctagagtcattttaataa
actaaagtaaaataaaataaaataaaataaaataaaataaaataaaataa
caagggctctgccattaaagcaaaagtggactggaaaatatcgcaggcca
tttgaaataattgttacagtagctgcaagctttttaaaaagctctgacct
ctcaaaattgtctttttactattatccttttatttcattggcctacttat
ctgaataagttatataattaactacgcttttttctttataaattttgtct
gaaactctcatcgatgcagaagttagatgatacgattgtcaggcaaccac
tgaacagtcagcaccagaaagaggatagttctaaaagaagtggagaacgt
tcttgattccattcttgtcttcatccataacaaaatagaggaatatatcc
ttaatgtaatctttattccaggtccattgcatgataagagcttggcttta
gaggggcatctacttccaaacttctccactcgtctgtcctgcccacaggc
ttgtagttctttcaccaggagcataatttgattatttttcttgtagacct
tctatacaaatttagcattttctattctcttttttgtgtcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51117024_51118120
seq2: B6Ng01-173F04.g_68_1161

seq1  GAATTCCACAGACCACTGTATAGATTGCTTTAGTTTACATTTTCTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGACCACTGTATAGATTGCTTTAGTTTACATTTTCTTTGTT  50

seq1  TTTCCAGGTTGTGTTAGATGGTCATGTTTTCTTTCATATTTCAAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTTGTGTTAGATGGTCATGTTTTCTTTCATATTTCAAATAAAA  100

seq1  TAAATCTGACCATCTGCATTATAAACTTGAGAATACATTCTCTTCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGACCATCTGCATTATAAACTTGAGAATACATTCTCTTCTTGTT  150

seq1  TGTCTCTTCATGTGTATGTTGATTTGAATTGGTGTATATGAGAACTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCATGTGTATGTTGATTTGAATTGGTGTATATGAGAACTTTTG  200

seq1  CCTTCAGTTCCAGGGCTGCCTCCCTTGGCTGGTTAGAAGGAGGAGCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTCCAGGGCTGCCTCCCTTGGCTGGTTAGAAGGAGGAGCAGTA  250

seq1  TCAAAGAGAGACTTAGCAATTCTCAGAGGTAGGCCCATAGTCACACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGAGACTTAGCAATTCTCAGAGGTAGGCCCATAGTCACACTACT  300

seq1  AAGTTGTGTTCAAGGGGCAGGTGTGAACTAGAAGATGACAGACAGACGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGTTCAAGGGGCAGGTGTGAACTAGAAGATGACAGACAGACGCA  350

seq1  AGTGACTGGAGCCGGCAGCAAAGAAGAAATTGTAGGAAGAAAGCAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGGAGCCGGCAGCAAAGAAGAAATTGTAGGAAGAAAGCAAGATC  400

seq1  TCCCAACAGAAAATAAGCAGAAGTCATGGATCTGTCAACTATTTAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAGAAAATAAGCAGAAGTCATGGATCTGTCAACTATTTAACCTC  450

seq1  ATCATAAACACTACATCCTGCCTGCAATGTTCCTAGAGTCATTTTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAACACTACATCCTGCCTGCAATGTTCCTAGAGTCATTTTAATAA  500

seq1  ACTAAAGTAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA  550

seq1  CAAGGGCTCTGCCATTAAAGCAAAAGTGGACTGGAAAATATCGCAGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTCTGCCATTAAAGCAAAAGTGGACTGGAAAATATCGCAGGCCA  600

seq1  TTTGAAATAATTGTTACAGTAGCTGCAAGCTTTTTAAAAAGCTCTGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATAATTGTTACAGTAGCTGCAAGCTTTTTAAAAAGCTCTGACCT  650

seq1  CTCAAAATTGTCTTTTTACTATTATCCTTTTATTTCATTGGCCTACTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTGTCTTTTTACTATTATCCTTTTATTTCATTGGCCTACTTAT  700

seq1  CTGAATAAGTTATATAATTAACTACGCTTTTTTCTTTATAAATTTTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAGTTATATAATTAACTACGCTTTTTTCTTTATAAATTTTGTCT  750

seq1  GAAACTCTCATCGATGCAGAAGTTAGATGATACGATTGTCAGGCAACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTCATCGATGCAGAAGTTAGATGATACGATTGTCAGGCAACCAC  800

seq1  TGAACAGTCAGCACCAGAAAGAGGATAGTTCTAAAAGAAGTGGAGAACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCAGCACCAGAAAGAGGATAGTTCTAAAAGAAGTGGAGAACGT  850

seq1  TCTTGATTCCATTCTTGTCTTCATCCATAACAAAATAGAGGAATATATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTCCATTCTTGTCTTCATCCATAACAAAATAGAGGAATATATCC  900

seq1  TTAATGTAATCTTTATTCCCAGGTCCATTGCATGATAAAGAGCTTGGCTT  950
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TTAATGTAATCTTTATT-CCAGGTCCATTGCATGAT-AAGAGCTTGGCTT  948

seq1  TAGA-GGGCATCTACTTCCAAACTTCTCCACTCGTCTGTCCTGCCCACAG  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGGCATCTACTTCCAAACTTCTCCACTCGTCTGTCCTGCCCACAG  998

seq1  GCCTTGTAGTTCTTTCACCAAGGAGCATAATTTGATTA-TTTTCTTGTAA  1048
      | ||||||||||||||||| |||||||||||||||||| ||||||||| |
seq2  G-CTTGTAGTTCTTTCACC-AGGAGCATAATTTGATTATTTTTCTTGT-A  1045

seq1  GACCTTCTATACAAATTTAGCA-TTTCTATTCCTCTTTTTGTTGTCATAT  1097
      |||||||||||||||||||||| |||||||| ||||||||  ||||||||
seq2  GACCTTCTATACAAATTTAGCATTTTCTATT-CTCTTTTTTGTGTCATAT  1094


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