BAC Information

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BAC

Clone NameB6Ng01-173G07
Chromosome1 (Build37)7 (Build37)
Map Location 95,826,257 - 95,826,77513,323,525 - 13,323,684
singlet/doubletsingletsinglet
Overlap geneLOC100041596
Upstream geneCapn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
Downstream geneEG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173G07.bB6Ng01-173G07.g
ACCGA001750GA001751
length513347
definitionB6Ng01-173G07.b B6Ng01-173G07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,826,257 - 95,826,775)(13,323,525 - 13,323,684)
sequence
aaagctagccgcagttacaagtgagatcacatttcaataattaatcaagc
aagcaaataaataagtgaaattacctgctgagtgtggtggtgtatacctt
taatctcagcactggggaggtagaagtaggcagacctctctgattttcaa
accagcctggactacatagcaactgtaacccaacttttgcctactttgtg
agttcttctctgcccttattgcaccttttcaatcccctcacactagatag
gagagaaaaagggatagaggggaaaggggtggtggtggacgttatcatta
gactactttctgctgatcaggacattgaattccttggcacaagtttgata
ttcgaggtcaggatctctaaatttcttcaagcttcttccttatgtgtgac
tacttaacaaaccacagacaacctctcatggggccctaacatgtatataa
cctctgaaaagtccccagaattccaaatgtcacacagttgctgaaactat
ctgcagctggcaa
tcgacttcctgttccacagggtttccaccctctgtctgtctgtctgtctg
tctgtctgtctgtctgtctgttgtatgtctctgcctgcctgaagattgtc
ttgtgactctgtccctgtgtctcctgttctgtaaatgtcatggctgtctg
tgtctgtgagtgttatctgtctgctgtatgagctcgctctctctctctct
ctctctctgtctctctctctgtctctctctctctgtgtctctctctctgt
ctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgt
ctctctctctctctctctctctctctctcgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95826257_95826775
seq2: B6Ng01-173G07.b_43_561

seq1  GAATTCAAAGCTAGCCGCAGTTACAAGTGAGATCACATTTCAATAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTAGCCGCAGTTACAAGTGAGATCACATTTCAATAATTAA  50

seq1  TCAAGCAAGCAAATAAATAAGTGAAATTACCTGCTGAGTGTGGTGGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAGCAAATAAATAAGTGAAATTACCTGCTGAGTGTGGTGGTGTA  100

seq1  TACCTTTAATCTCAGCACTGGGGAGGTAGAAGTAGGCAGACCTCTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAATCTCAGCACTGGGGAGGTAGAAGTAGGCAGACCTCTCTGAT  150

seq1  TTTCAAACCAGCCTGGACTACATAGCAACTGTAACCCAACTTTTGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACCAGCCTGGACTACATAGCAACTGTAACCCAACTTTTGCCTAC  200

seq1  TTTGTGAGTTCTTCTCTGCCCTTATTGCACCTTTTCAATCCCCTCACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGTTCTTCTCTGCCCTTATTGCACCTTTTCAATCCCCTCACACT  250

seq1  AGATAGGAGAGAAAAAGGGATAGAGGGGAAAGGGGTGGTGGTGGACGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAGAGAAAAAGGGATAGAGGGGAAAGGGGTGGTGGTGGACGTTA  300

seq1  TCATTAGACTACTTTCTGCTGATCAGGACATTGAATTCCTTGGCACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGACTACTTTCTGCTGATCAGGACATTGAATTCCTTGGCACAAGT  350

seq1  TTGATATTCGAGGTCAGGATCTCTAAATTTCTTCAAGCTTCTTCCTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTCGAGGTCAGGATCTCTAAATTTCTTCAAGCTTCTTCCTTATG  400

seq1  TGTGACTACTTAACAAACCACAGACAACCTCTCATGGGGCCCTAACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTACTTAACAAACCACAGACAACCTCTCATGGGGCCCTAACATGT  450

seq1  ATATAACCTCTGAAAAGTCCCCAGAATTCCAAATGTCACACAGTTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACCTCTGAAAAGTCCCCAGAATTCCAAATGTCACACAGTTGCTGA  500

seq1  AACTATCTGCAGCTGGCAA  519
      |||||||||||||||||||
seq2  AACTATCTGCAGCTGGCAA  519

seq1: chr7_13323525_13323684
seq2: B6Ng01-173G07.g_260_420 (reverse)

seq1  ACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  ACACACACACACACACAC-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC  49

seq1  ACAGAGACAGAGACAGAGACAGAGAGACAGAGACAGAGAGACAGAGAGAC  100
      | ||||| ||||||||||| ||||| | | ||| ||||||||||| ||||
seq2  AGAGAGAGAGAGACAGAGAGAGAGACAGACAGAGAGAGAGACAGACAGAC  99

seq1  AGAGACAGAGAGACAGAGAGAGAGAG--AGAGAGAGAGACAGAGAGAGAG  148
      ||||| ||||| ||||||||||||||  ||||||||||||||||||||||
seq2  AGAGAGAGAGACACAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAG  149

seq1  AGACAGAGAGAG  160
      ||| ||||||||
seq2  AGAGAGAGAGAG  161