BAC Information

Click to search

BAC

Clone NameB6Ng01-173J12
Chromosome1 (Build37)
Map Location 166,566,456 - 166,693,300
singlet/doubletdoublet
Overlap genenone
Upstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J12.bB6Ng01-173J12.g
ACCGA001900GA001901
length9251,078
definitionB6Ng01-173J12.b B6Ng01-173J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,566,456 - 166,567,368)(166,692,238 - 166,693,300)
sequence
gaattcttttttaattaattattttatttacattccagatgttgctccct
cctggtcctccctcccacagttcttcatcgaattccccctcctctttgcc
tctgagagggtgctctccccttcccagacccctgcataggcattcccctt
ccctggggcctcaagtctccaactaactccagacaaggcagtcctttgct
atatatatatatatatatatatatgtgccatgcgccagtctgtgtatgct
ctttgcttggtggcctagtctctgggagctcccagaggtctgggttagtt
gacactgttggtcttcctatggggttgccatccctttcagcttcttcaat
ccttcccctaactcttccatgggggttcctgacttcattctaatagttta
gtgtaaatacctgcatctgtctcagttgactgctggtagggcctctcaga
ggacagccatgctaggctattgtctgtaagcacatcatagcaacaggagt
tagtgctccctcatgagatgggtcccaaattgggcagatcattggaccac
cttttcttcagtttcttctctatttctgtcctgtccctgcatttatttca
gacaggaacaattctgggtcagaaattttgatggtgggttggtaacccat
ccctccactcggggcccctgtgtaactactggagatggtctgtctcctca
ggtttcctctctccactgttgggcattttcagctaagaattctgaaagtt
acccagttctctaagtgaataagtaaacaccttcctaatccacacaattg
ctttcaaaatagaatttttaaaaattattttatgcagctgaacgggtgaa
aaattaaacatgttctgttgttcattacacaggtcttggggacccacatg
ggcagggctgtgacagaccttggat
gaattcagaataaatatcactgttatttctttgaacagatatttgtacat
atatagctttgcctggatctctgatcatgactcttttaaacatgtgggtt
acgtcaagggaggatgagggacactacaaagggaagcaaccagtggatgg
ttgagtctgctaagcatctctgagggagtcattaaagcaatttgtcatca
ctttagttcaggtgaattgtgaggtaaactctctatagggtgttccttca
ctcctggttacagttattatcttgatggtgactgaaattagatgcagagt
cctttaaatgaagatgagaacctagtgatcgagaccacagtagatgaatg
gatttttctcctcacaacagtgggaagagtttgaataaggcttgaagtta
atcatgaatcttgttcttaaacaaaatcaccaccattctgtcctacaaag
gagaaggttgtctctcttttcatatttgatagctgaaaggagagaagtca
cataataatttattatatttatttcataatagctacagtaagagataaat
acacacataccaatgcaaacacactaatccaaacagccacagaacactag
gtgcttataaaaggccttactcatgcacttctggatctttctactatccc
cttggtgaggaaaggttcctctgagctaggccatgcccaggcctccctgg
tggacagcagggaaataactcgggcagggtgaaagaagcagatgtggcaa
gtttgccagttgtgtgcaacagaagaaaaaaaaaagacacaagataaagg
caaacatttactcattttttccatatgaacctagaattcctgggttgttt
ttctaccgttctctccatgtttccaccacaaagcaaacaaaaacaagaaa
caaaaaacaaaaaaaacccttccaaacaaaacaaacataaaactatatca
ccccttgtaaaatttatcaatagtgacttttcatcccatcctttaagggt
cccaaagctttaattatttattggaagaaacatggaaaattgtccacttt
ttggattcctttttttgtctctgtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166566456_166567368
seq2: B6Ng01-173J12.b_45_969

seq1  GAATTCTTTTTTAATTAATTATTTTATTTACATTCCAGATGTTGCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTAATTAATTATTTTATTTACATTCCAGATGTTGCTCCCT  50

seq1  CCTGGTCCTCCCTCCCACAGTTCTTCATCGAATTCCCCCTCCTCTTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTCCCTCCCACAGTTCTTCATCGAATTCCCCCTCCTCTTTGCC  100

seq1  TCTGAGAGGGTGCTCTCCCCTTCCCAGACCCCTGCATAGGCATTCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGGTGCTCTCCCCTTCCCAGACCCCTGCATAGGCATTCCCCTT  150

seq1  CCCTGGGGCCTCAAGTCTCCAACTAACTCCAGACAAGGCAGTCCTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGCCTCAAGTCTCCAACTAACTCCAGACAAGGCAGTCCTTTGCT  200

seq1  ATATATATATATATATATATATATGTGCCATGCGCCAGTCTGTGTATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATGTGCCATGCGCCAGTCTGTGTATGCT  250

seq1  CTTTGCTTGGTGGCCTAGTCTCTGGGAGCTCCCAGAGGTCTGGGTTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTGGTGGCCTAGTCTCTGGGAGCTCCCAGAGGTCTGGGTTAGTT  300

seq1  GACACTGTTGGTCTTCCTATGGGGTTGCCATCCCTTTCAGCTTCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTGGTCTTCCTATGGGGTTGCCATCCCTTTCAGCTTCTTCAAT  350

seq1  CCTTCCCCTAACTCTTCCATGGGGGTTCCTGACTTCATTCTAATAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTAACTCTTCCATGGGGGTTCCTGACTTCATTCTAATAGTTTA  400

seq1  GTGTAAATACCTGCATCTGTCTCAGTTGACTGCTGGTAGGGCCTCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATACCTGCATCTGTCTCAGTTGACTGCTGGTAGGGCCTCTCAGA  450

seq1  GGACAGCCATGCTAGGCTATTGTCTGTAAGCACATCATAGCAACAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCATGCTAGGCTATTGTCTGTAAGCACATCATAGCAACAGGAGT  500

seq1  TAGTGCTCCCTCATGAGATGGGTCCCAAATTGGGCAGATCATTGGACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTCCCTCATGAGATGGGTCCCAAATTGGGCAGATCATTGGACCAC  550

seq1  CTTTTCTTCAGTTTCTTCTCTATTTCTGTCCTGTCCCTGCATTTATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCAGTTTCTTCTCTATTTCTGTCCTGTCCCTGCATTTATTTCA  600

seq1  GACAGGAACAATTCTGGGTCAGAAATTTTGATGGTGGGTTGGTAACCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAACAATTCTGGGTCAGAAATTTTGATGGTGGGTTGGTAACCCAT  650

seq1  CCCTCCACTCGGGG-CCCTGTGTAACTACTGGAGATGGTCTGTCTCCTCA  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTCCACTCGGGGCCCCTGTGTAACTACTGGAGATGGTCTGTCTCCTCA  700

seq1  GGTTTCCTCTCTCCACTGTTGGGCA-TTTCAGCTAAGAATTCTG-AAGTT  747
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  GGTTTCCTCTCTCCACTGTTGGGCATTTTCAGCTAAGAATTCTGAAAGTT  750

seq1  ACCCAGTTCTCTAAGTGAATAAGTAAACA-CTTCCTAATCCACACAA-TG  795
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  ACCCAGTTCTCTAAGTGAATAAGTAAACACCTTCCTAATCCACACAATTG  800

seq1  CTTTCAAAATAGAATTTTTAAAAATTATTTTATGCAGCTGAAC-GGTG-A  843
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  CTTTCAAAATAGAATTTTTAAAAATTATTTTATGCAGCTGAACGGGTGAA  850

seq1  AAATTAAACATGTTCTGTTGTTCATTACACA-GTCTT-GGGAACCACAT-  890
      ||||||||||||||||||||||||||||||| ||||| |||| |||||| 
seq2  AAATTAAACATGTTCTGTTGTTCATTACACAGGTCTTGGGGACCCACATG  900

seq1  GGCA-GGCTGTGACAGACC-TGGAT  913
      |||| |||||||||||||| |||||
seq2  GGCAGGGCTGTGACAGACCTTGGAT  925

seq1: chr1_166692238_166693300
seq2: B6Ng01-173J12.g_68_1145 (reverse)

seq1  AAAGACAGAGACTAAAAAA-GAATCC-AAAAGT-GACAA-TTTCCATG-T  45
      |||||||||||| |||||| |||||| |||||| ||||| |||||||| |
seq2  AAAGACAGAGACAAAAAAAGGAATCCAAAAAGTGGACAATTTTCCATGTT  50

seq1  TCTTC--ATTAAT-ATATAAGCTTTGGGACCCT--AAGGATGGGATG-AA  89
      |||||  || ||| ||  |||||||||||||||  |||||||||||| ||
seq2  TCTTCCAATAAATAATTAAAGCTTTGGGACCCTTAAAGGATGGGATGAAA  100

seq1  AGTCACTATTGATTAAATTTTAC-AGGGTTGATATAGTTTTATGTTTTGT  138
      |||||||||||| |||||||||| |||| ||||||||||||||| |||||
seq2  AGTCACTATTGA-TAAATTTTACAAGGGGTGATATAGTTTTATG-TTTGT  148

seq1  TTTGTTTGGAAGGGTTTTTTTTGTTTTTTGTTTCTTGTTTTTGTTTTGCT  188
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGTTTGGAAGGGTTTTTTTTGTTTTTTGTTTCTTGTTTTTG-TTTGCT  197

seq1  TTGTTGTTGAAACATGGAGAGAACGGTAGAAAAACAA-CCAGGAATTCTA  237
      |||| || ||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGTGGTGGAAACATGGAGAGAACGGTAGAAAAACAACCCAGGAATTCTA  247

seq1  GG-TCATATGG-AAAAATGAGTAAATGTTTGCCTTAATCTTGTGTC-TTT  284
      || |||||||| ||||||||||||||||||||||| |||||||||| |||
seq2  GGTTCATATGGAAAAAATGAGTAAATGTTTGCCTTTATCTTGTGTCTTTT  297

seq1  TTTTTTCTTCTGTTGCACAC-ACTGGCAAACTTGCCACATCTGCTTCTTT  333
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTTTCTTCTGTTGCACACAACTGGCAAACTTGCCACATCTGCTTCTTT  347

seq1  CACCCTGCCCGAGTTATTTCCCTGCTGTCCACCA-GGAGGCCTGGGCATG  382
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACCCTGCCCGAGTTATTTCCCTGCTGTCCACCAGGGAGGCCTGGGCATG  397

seq1  GCCTAGCTCAGAGGAACCTTTCCTCACCAAGGGGATAGTAGAAAGATCCA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTCAGAGGAACCTTTCCTCACCAAGGGGATAGTAGAAAGATCCA  447

seq1  GAAGTGCATGAGTAAGGCCTTTTATAAGCACCTAGTGTTCTGTGGCTGTT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCATGAGTAAGGCCTTTTATAAGCACCTAGTGTTCTGTGGCTGTT  497

seq1  TGGATTAGTGTGTTTGCATTGGTATGTGTGTATTTATCTCTTACTGTAGC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGTGTGTTTGCATTGGTATGTGTGTATTTATCTCTTACTGTAGC  547

seq1  TATTATGAAATAAATATAATAAATTATTATGTGACTTCTCTCCTTTCAGC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAAATAAATATAATAAATTATTATGTGACTTCTCTCCTTTCAGC  597

seq1  TATCAAATATGAAAAGAGAGACAACCTTCTCCTTTGTAGGACAGAATGGT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATATGAAAAGAGAGACAACCTTCTCCTTTGTAGGACAGAATGGT  647

seq1  GGTGATTTTGTTTAAGAACAAGATTCATGATTAACTTCAAGCCTTATTCA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTGTTTAAGAACAAGATTCATGATTAACTTCAAGCCTTATTCA  697

seq1  AACTCTTCCCACTGTTGTGAGGAGAAAAATCCATTCATCTACTGTGGTCT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCCCACTGTTGTGAGGAGAAAAATCCATTCATCTACTGTGGTCT  747

seq1  CGATCACTAGGTTCTCATCTTCATTTAAAGGACTCTGCATCTAATTTCAG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACTAGGTTCTCATCTTCATTTAAAGGACTCTGCATCTAATTTCAG  797

seq1  TCACCATCAAGATAATAACTGTAACCAGGAGTGAAGGAACACCCTATAGA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCAAGATAATAACTGTAACCAGGAGTGAAGGAACACCCTATAGA  847

seq1  GAGTTTACCTCACAATTCACCTGAACTAAAGTGATGACAAATTGCTTTAA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCTCACAATTCACCTGAACTAAAGTGATGACAAATTGCTTTAA  897

seq1  TGACTCCCTCAGAGATGCTTAGCAGACTCAACCATCCACTGGTTGCTTCC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCAGAGATGCTTAGCAGACTCAACCATCCACTGGTTGCTTCC  947

seq1  CTTTGTAGTGTCCCTCATCCTCCCTTGACGTAACCCACATGTTTAAAAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGTGTCCCTCATCCTCCCTTGACGTAACCCACATGTTTAAAAGA  997

seq1  GTCATGATCAGAGATCCAGGCAAAGCTATATATGTACAAATATCTGTTCA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATCAGAGATCCAGGCAAAGCTATATATGTACAAATATCTGTTCA  1047

seq1  AAGAAATAACAGTGATATTTATTCTGAATTC  1063
      |||||||||||||||||||||||||||||||
seq2  AAGAAATAACAGTGATATTTATTCTGAATTC  1078