BAC Information

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BAC

Clone NameB6Ng01-173N03
Chromosome1 (Build37)
Map Location 191,425,148 - 191,426,251
singlet/doubletsinglet
Overlap genenone
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307
Downstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N03.bB6Ng01-173N03.g
ACCGA002067GA002068
length1,2231,110
definitionB6Ng01-173N03.b B6Ng01-173N03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttaaagaattacaggaaaacacaaccaaacaggtgatggaatt
gaacaaaaccatccaacacctaaaaagggaagtagaaacaaaaaaaaaaa
aaaaccaccaaagtgagacaactctgtagatagaaaccctaggaaagaaa
tcaggaaccatagatgcaagcatcaaaaacagaatacaagagatggaaga
gagaatctcaggtacagaagattccatagagaacatacatgggcacaaca
ataaaaaaaaaaaaatgtaaaatgcaagaagagcctaactcaaaacatcc
aggaaatccaggacacaatgagaaaaccaaaccaacggatactaggagta
gatgagaatgaaaattttcaacttaaagggccagcaaatatcttcaacaa
tattatagaagaaaactttccaaacctaaagaaagagatgcccatgaaca
tataagaagcctacagaactccaaatagactggaccagaaaagaaattcc
tcccgacacataataatcagaacaacaaatgcactaaataaagatagaat
attaaaagcagtaaggaaaaaaggtcaagtaacatataaaagcaggccta
ttagaattacatcagacttctcaccagagactatgaaagccataagatcc
tggacagatgttatgcagaccctaagagaacacaaatgccagcccaggct
actatacccaacaaaactctcaattaccatagatggaggaaccaaaatat
tccatgataaaaccaaattcacacaatatctttccacgaatccagccctt
caaaggataataaagggaaaacaccaacacaaggacagaaactacaccct
agaaaagcaagaaagtaatccttcaacaaacctaaaacaagacagctgca
agaaacagaatcccaactttaacaactaaagtaacaggaagcaacattac
ttttctttatttctctaacatcaatggactcatttccccataaaggacat
agacatagactggattatacaaacaggacccacatttgctgattacagga
aacccacctcaggaaaaggacagacactacctcagaagtgaaaggctgca
aacatttttcaagcaatggtctgagaaacatggctggagtagcattctaa
atcggattaattgaacgtctaaccaaagggtatcgaaggagaaagggggg
ggcaccttctatactcttatctc
gaattcaaaccaacaaacataatatcagaatggcctcagagaagaccttg
gagtcctcaagtaaggatgtgctgtgagagacagggggacactgctggga
cggagtgttgattaaaacagccctttccgcagaaggtgttgtttggcaga
cataagcatgcctgggacatcaatgaaacaaaagcaaatctaagctagtt
aaagcaattcaataaaggtgacctttgaagaaaaagataaggagatagta
aaagctacgttattatccagtttctttaaccaaaacacacaaaaaagaaa
aaaaaagtccaatgagctaattgattatgatgcaagaaatttgcaacatt
gtaacttttataggttcccatgtgtcttctaaataagttatgattattca
gaactctcagaccttatgtgtatgtgtgttttgcctgtgtgcaccacaaa
caagtttgatgcccgtggaggccagaagagggtgttggatccctctggac
tggagttacagaagacagtaagctgccatgtgggaactgggaacccatcc
caggccctcaaagagtagtcaccggtgccctcagctactaagccatctct
ccagccctaaaagctttttacacagttaatgcattaatcagtgaggtgtt
gggctgttaagagcctgacacttcatgcctaggtcccaagtaagtgtgaa
aggatttgaggcgtgggaaccaaacagtacacttgttattgctttgctta
ggccatagcagagggcacacctaggagacatagctgtagcatttgggtgt
tacccccactgtagaatctttcctttgtcactggaacatgttctcagcat
tctctcttctcttgttctacactgtagcgaagaaagtaacacaggttatt
aaataattttgaattcctctagccttgtgcatgctggattcagagcacca
attattagcattacagggtccagcttgtcctcccgtccagcccttcaacg
cctccccccacccccctgttccagggagaggcccgtgcttgcctcaggag
aagaccttccatggccagccatttggtaagcaggctttccattaggattg
ttccttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191425148_191426251
seq2: B6Ng01-173N03.g_70_1179 (reverse)

seq1  CCAAA--GAACAATCCTAAT-GAAAGCCTGCTTTCCAAATGGCT-GCCAT  46
      |||||  ||||||||||||| |||||||||||| |||||||||| |||||
seq2  CCAAAAGGAACAATCCTAATGGAAAGCCTGCTTACCAAATGGCTGGCCAT  50

seq1  GGATGTCTTTCTTCCTGA-GCAAGCACGTGCCCTCTCCCTGGAACA-GGG  94
      ||| |   ||| |||||| ||||||||| | ||||||||||||||| |||
seq2  GGAAGGTCTTC-TCCTGAGGCAAGCACG-GGCCTCTCCCTGGAACAGGGG  98

seq1  GGTGGGGG--AGCGTTGAAGGGCTGGACGGGA-GACAAGCTGGACCCTGT  141
      ||||||||   ||||||||||||||||||||| |||||||||||||||||
seq2  GGTGGGGGGAGGCGTTGAAGGGCTGGACGGGAGGACAAGCTGGACCCTGT  148

seq1  AATGCTAATAATTGGTGCTCTGAATCCAGCATGCACAA-GCTAGAGGAAT  190
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATGCTAATAATTGGTGCTCTGAATCCAGCATGCACAAGGCTAGAGGAAT  198

seq1  TCAAAATTATTTTAATAACCTGTGTTACTTTCTTCGCTACAGTTGTAGAA  240
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  TCAAAATTA-TTTAATAACCTGTGTTACTTTCTTCGCTACAG-TGTAGAA  246

seq1  CAAGAGAAGAGAGAATGCTGAGAACATGTTCCAGTGACAAAGGAAAGATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGAGAGAATGCTGAGAACATGTTCCAGTGACAAAGGAAAGATT  296

seq1  CTACAGTGGGGGTAACACCCAAATGCTACAGCTATGTCTCCTAGGTGTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGGGGGTAACACCCAAATGCTACAGCTATGTCTCCTAGGTGTGC  346

seq1  CCTCTGCTATGGCCTAAGCAAAGCAATAACAAGTGTACTGTTTGGTTCCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTATGGCCTAAGCAAAGCAATAACAAGTGTACTGTTTGGTTCCC  396

seq1  ACGCCTCAAATCCTTTCACACTTACTTGGGACCTAGGCATGAAGTGTCAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCAAATCCTTTCACACTTACTTGGGACCTAGGCATGAAGTGTCAG  446

seq1  GCTCTTAACAGCCCAACACCTCACTGATTAATGCATTAACTGTGTAAAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACAGCCCAACACCTCACTGATTAATGCATTAACTGTGTAAAAA  496

seq1  GCTTTTAGGGCTGGAGAGATGGCTTAGTAGCTGAGGGCACCGGTGACTAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGGGCTGGAGAGATGGCTTAGTAGCTGAGGGCACCGGTGACTAC  546

seq1  TCTTTGAGGGCCTGGGATGGGTTCCCAGTTCCCACATGGCAGCTTACTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGGGCCTGGGATGGGTTCCCAGTTCCCACATGGCAGCTTACTGT  596

seq1  CTTCTGTAACTCCAGTCCAGAGGGATCCAACACCCTCTTCTGGCCTCCAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAACTCCAGTCCAGAGGGATCCAACACCCTCTTCTGGCCTCCAC  646

seq1  GGGCATCAAACTTGTTTGTGGTGCACACAGGCAAAACACACATACACATA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAAACTTGTTTGTGGTGCACACAGGCAAAACACACATACACATA  696

seq1  AGGTCTGAGAGTTCTGAATAATCATAACTTATTTAGAAGACACATGGGAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAGAGTTCTGAATAATCATAACTTATTTAGAAGACACATGGGAA  746

seq1  CCTATAAAAGTTACAATGTTGCAAATTTCTTGCATCATAATCAATTAGCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAAGTTACAATGTTGCAAATTTCTTGCATCATAATCAATTAGCT  796

seq1  CATTGGACTTTTTTTTTCTTTTTTGTGTGTTTTGGTTAAAGAAACTGGAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACTTTTTTTTTCTTTTTTGTGTGTTTTGGTTAAAGAAACTGGAT  846

seq1  AATAACGTAGCTTTTACTATCTCCTTATCTTTTTCTTCAAAGGTCACCTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGTAGCTTTTACTATCTCCTTATCTTTTTCTTCAAAGGTCACCTT  896

seq1  TATTGAATTGCTTTAACTAGCTTAGATTTGCTTTTGTTTCATTGATGTCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTGCTTTAACTAGCTTAGATTTGCTTTTGTTTCATTGATGTCC  946

seq1  CAGGCATGCTTATGTCTGCCAAACAACACCTTCTGCGGAAAGGGCTGTTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGCTTATGTCTGCCAAACAACACCTTCTGCGGAAAGGGCTGTTT  996

seq1  TAATCAACACTCCGTCCCAGCAGTGTCCCCCTGTCTCTCACAGCACATCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACACTCCGTCCCAGCAGTGTCCCCCTGTCTCTCACAGCACATCC  1046

seq1  TTACTTGAGGACTCCAAGGTCTTCTCTGAGGCCATTCTGATATTATGTTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAGGACTCCAAGGTCTTCTCTGAGGCCATTCTGATATTATGTTT  1096

seq1  GTTGGTTTGAATTC  1104
      ||||||||||||||
seq2  GTTGGTTTGAATTC  1110