BAC Information

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BAC

Clone NameB6Ng01-174B15
Chromosome1 (Build37)
Map Location 87,790,735 - 87,953,959
singlet/doubletdoublet
Overlap geneItm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39
Downstream genePsmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174B15.bB6Ng01-174B15.g
ACCGA002274GA002275
length1,066613
definitionB6Ng01-174B15.b B6Ng01-174B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,952,908 - 87,953,959)(87,790,735 - 87,791,347)
sequence
gaattctaggccagaaagtgctacatggtgagaccctatttcgcaaacaa
aaacaaaaaaccgcatatgattaaaatgaatcctatctgtttctttgccc
ccttttttcctaaggtggctactagaaaatggagggtttcacatatgcct
tgccatagatttcttttggccactctgactcatgtttggccccttcaggg
tcttgcctactctctggagctgtccatttggcctgactctaggtaggttg
aggaggagataccctcttgtcagggggcaaggagctgagcgtggccgtcc
ccacaactaggagttctggagtaggcagtccacagagactataggccaga
ctgaagttagtctgtaaggacaatgatgaagccaccagcaacttgaaaac
ctccttcattgtcaatgaagggaaagagcttggggctaagagacagaccc
agtttctgaaactagaacccaaaatgaggacttggttacaaggactaagc
agggtgctctaagcccagctgaacttttgggccagagtcatggctagaga
gcccagaaggaaggtagatgaggtttcacctttaccaaagccacacagct
ctcctagagtatgccctcccaacaccctgttctcccttcccactctcacc
cctgtgcacttcctgtgactctgagcccataacatagcctcacaggcagc
catgtttctcccagttagtagccctgagtgtaagactagccgaagacttg
ggccaaaaggttgaaggccgattaaggatgtgttatacggttcctggtgg
ttccagaacccaccaccctccctcaatcccaacaccaaggttatgcaagt
ggttaggctgctctggccaaaattccacctctgtcccaatgcttgatcca
ccagctcaaataaacaggtcacaattgcttggtgcagccttcataaagtc
cagcctccttcacccagtgttgaactatgcaacagaacaaagggaactaa
gtccgggtctacctggtccctaggaagctaggcctctaccttggtcatgc
ttctccccacccccaa
gaattcaggatagaggcaagcggttaggcgtctggagttgatgccccttt
ccagcctaacacatgttggaggaggaaagcttagaacagttagttactct
gcgtcttctctcaacataatcaaagatatcgaggaggagggagatgcagt
ttgttagaagcacgttgccaggcaacgtcgtgttaaactacatgtgagga
tgctagtcatgggcagggagaaggaaggggtccaagctcttgcgcgacga
ctgaatgaatgaatataagcaagaggtggaaggaaatctcagcattcttc
agctacagtgctgcccggtgcagttcggcgcaggcgtcaggtccttcctt
ggaaggcggggcgggacgcgttcggggcggggacagaggcgaggactccg
gagccatccaaacttccggtgcctgcggcgcagcaagaagcaggcattgc
gatcgaggttgcactggcaggggctgcagggagcaggcgcaggtcaacgc
agccatggtgaagatcagtttccagcccgcggtagcgggcatcaaggctg
ataaagcggacaaagcagcggcgtctggtccggcctcggcatctgccccg
gccgcggagatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87952908_87953959
seq2: B6Ng01-174B15.b_37_1102 (reverse)

seq1  TTGGGGGTGGTGGGAGCAG--TGA-CAAGGTAGAGGCCTTGCTTCCTAGG  47
      |||||||||  ||||| ||  ||| |||||||||||||| ||||||||||
seq2  TTGGGGGTG--GGGAGAAGCATGACCAAGGTAGAGGCCTAGCTTCCTAGG  48

seq1  GA-CAGGTAG-CCCGGACTTTG-TCCCTTTGTTCTGTTTGCAT-GGTCAA  93
      || ||||||| ||||||||| | ||||||||||||| |||||| | ||||
seq2  GACCAGGTAGACCCGGACTTAGTTCCCTTTGTTCTG-TTGCATAGTTCAA  97

seq1  CACTGGGTGGAGGAGGCTGG-CTTTATTGAAGGCTGCA-CAAGC-ACTCT  140
      ||||||||| |||||||||| ||||| ||||||||||| ||||| | | |
seq2  CACTGGGTGAAGGAGGCTGGACTTTA-TGAAGGCTGCACCAAGCAATTGT  146

seq1  GACCTGTTTTTGTGAGCTGGTGGATCAAGCATTGGGACAGAGGTGGAA-T  189
      ||||||||| | |||||||||||||||||||||||||||||||||||| |
seq2  GACCTGTTTATTTGAGCTGGTGGATCAAGCATTGGGACAGAGGTGGAATT  196

seq1  TTGGCCAGAGCAGCCT-ACCACTTGCATAACCTTGGTGTTGGGATTGAGG  238
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGCCAGAGCAGCCTAACCACTTGCATAACCTTGGTGTTGGGATTGAGG  246

seq1  GAGGGTGGT-GGTTCTGG-ACCACCAGGAACCGTAT-ACACATCCTT-AT  284
      ||||||||| |||||||| ||||||||||||||||| |||||||||| ||
seq2  GAGGGTGGTGGGTTCTGGAACCACCAGGAACCGTATAACACATCCTTAAT  296

seq1  CGGCCTTCAACC-TTTGGCCCAAGTCTTCGGCTAGTCTTACACTCAGGGC  333
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTCAACCTTTTGGCCCAAGTCTTCGGCTAGTCTTACACTCAGGGC  346

seq1  TACTAACTGGGAG-AACATGGCTGCCTGTGAGGCTATGTTAT-GGCTCAG  381
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  TACTAACTGGGAGAAACATGGCTGCCTGTGAGGCTATGTTATGGGCTCAG  396

seq1  AGTCACAGGAAGTGCACAGGGGTGAGAGTGGGAAGGGAGAACAGGGTGTT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGAAGTGCACAGGGGTGAGAGTGGGAAGGGAGAACAGGGTGTT  446

seq1  GGGAGGGCATACTCTAGGAGAGCTGTGTGGCTTTGGTAAAGGTGAAACCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCATACTCTAGGAGAGCTGTGTGGCTTTGGTAAAGGTGAAACCT  496

seq1  CATCTACCTTCCTTCTGGGCTCTCTAGCCATGACTCTGGCCCAAAAGTTC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCTTCCTTCTGGGCTCTCTAGCCATGACTCTGGCCCAAAAGTTC  546

seq1  AGCTGGGCTTAGAGCACCCTGCTTAGTCCTTGTAACCAAGTCCTCATTTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCTTAGAGCACCCTGCTTAGTCCTTGTAACCAAGTCCTCATTTT  596

seq1  GGGTTCTAGTTTCAGAAACTGGGTCTGTCTCTTAGCCCCAAGCTCTTTCC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTAGTTTCAGAAACTGGGTCTGTCTCTTAGCCCCAAGCTCTTTCC  646

seq1  CTTCATTGACAATGAAGGAGGTTTTCAAGTTGCTGGTGGCTTCATCATTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGACAATGAAGGAGGTTTTCAAGTTGCTGGTGGCTTCATCATTG  696

seq1  TCCTTACAGACTAACTTCAGTCTGGCCTATAGTCTCTGTGGACTGCCTAC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAGACTAACTTCAGTCTGGCCTATAGTCTCTGTGGACTGCCTAC  746

seq1  TCCAGAACTCCTAGTTGTGGGGACGGCCACGCTCAGCTCCTTGCCCCCTG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACTCCTAGTTGTGGGGACGGCCACGCTCAGCTCCTTGCCCCCTG  796

seq1  ACAAGAGGGTATCTCCTCCTCAACCTACCTAGAGTCAGGCCAAATGGACA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGGTATCTCCTCCTCAACCTACCTAGAGTCAGGCCAAATGGACA  846

seq1  GCTCCAGAGAGTAGGCAAGACCCTGAAGGGGCCAAACATGAGTCAGAGTG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGAGTAGGCAAGACCCTGAAGGGGCCAAACATGAGTCAGAGTG  896

seq1  GCCAAAAGAAATCTATGGCAAGGCATATGTGAAACCCTCCATTTTCTAGT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGAAATCTATGGCAAGGCATATGTGAAACCCTCCATTTTCTAGT  946

seq1  AGCCACCTTAGGAAAAAAGGGGGCAAAGAAACAGATAGGATTCATTTTAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTTAGGAAAAAAGGGGGCAAAGAAACAGATAGGATTCATTTTAA  996

seq1  TCATATGCGGTTTTTTGTTTTTGTTTGTTGAGATAGGGTCTCACCATGTA  1031
      |||||||||||||||||||||||||||  || ||||||||||||||||||
seq2  TCATATGCGGTTTTTTGTTTTTGTTTG-CGAAATAGGGTCTCACCATGTA  1045

seq1  GCACTTTCTGGCCTAGAATTC  1052
      |||||||||||||||||||||
seq2  GCACTTTCTGGCCTAGAATTC  1066

seq1: chr1_87790735_87791347
seq2: B6Ng01-174B15.g_71_683

seq1  GAATTCAGGATAGAGGCAAGCAGTTAGGCGTCTGGAGTTGATGCCCCTTT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAATTCAGGATAGAGGCAAGCGGTTAGGCGTCTGGAGTTGATGCCCCTTT  50

seq1  CCAGCCTAACACATGTTGGAGGAGGAAAGCTTAGAACAGTTAGTTACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAACACATGTTGGAGGAGGAAAGCTTAGAACAGTTAGTTACTCT  100

seq1  GCGTCTTCTCTCAACATAATCAAAGATATCGAGGAGGAGGGAGATGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTTCTCTCAACATAATCAAAGATATCGAGGAGGAGGGAGATGCAGT  150

seq1  TTGTTAGAAGCACGTTGCCAGGCAACGTCGTGTTAAACTACATGTGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAAGCACGTTGCCAGGCAACGTCGTGTTAAACTACATGTGAGGA  200

seq1  TGCTAGTCATGGGCAGGGAGAAGGAAGGGGTCCAAGCTCTTGCGCGACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTCATGGGCAGGGAGAAGGAAGGGGTCCAAGCTCTTGCGCGACGA  250

seq1  CTGAATGAATGAATATAAGCAAGAGGTGGAAGGAAATCTCAGCATTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAATGAATATAAGCAAGAGGTGGAAGGAAATCTCAGCATTCTTC  300

seq1  AGCTACAGTGCTGCCCGGTGCAGTTCGGCGCAGGCGTCAGGTCCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGTGCTGCCCGGTGCAGTTCGGCGCAGGCGTCAGGTCCTTCCTT  350

seq1  GGAAGGCGGGGCGGGACGCGTTCGGGGCGGGGACAGAGGCGAGGACTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCGGGGCGGGACGCGTTCGGGGCGGGGACAGAGGCGAGGACTCCG  400

seq1  GAGCCATCCAAACTTCCGGTGCCTGCGGCGCAGCAAGAAGCAGGCATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCCAAACTTCCGGTGCCTGCGGCGCAGCAAGAAGCAGGCATTGC  450

seq1  GATCGAGGTTGCACTGGCAGGGGCTGCAGGGAGCAGGCGCAGGTCAACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGAGGTTGCACTGGCAGGGGCTGCAGGGAGCAGGCGCAGGTCAACGC  500

seq1  AGCCATGGTGAAGATCAGTTTCCAGCCCGCGGTAGCGGGCATCAAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGTGAAGATCAGTTTCCAGCCCGCGGTAGCGGGCATCAAGGCTG  550

seq1  ATAAAGCGGACAAAGCAGCGGCGTCTGGTCCGGCCTCGGCATCTGCCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCGGACAAAGCAGCGGCGTCTGGTCCGGCCTCGGCATCTGCCCCG  600

seq1  GCCGCGGAGATCC  613
      |||||||||||||
seq2  GCCGCGGAGATCC  613