BAC Information

Click to search

BAC

Clone NameB6Ng01-174G10
Chromosome1 (Build37)
Map Location 88,084,209 - 88,247,907
singlet/doubletdoublet
Overlap geneArmc9, B3gnt7, EG383538, Ncl
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream geneSnord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G10.bB6Ng01-174G10.g
ACCGA002492GA002493
length679616
definitionB6Ng01-174G10.b B6Ng01-174G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,247,229 - 88,247,907)(88,084,209 - 88,084,822)
sequence
gaattctgcatggagaacttgggtctgcagtatcttctcattgagctcct
ttctgtccatcagtgatagattatggattcgcacgagaagaagagagaat
tcacagaactggcacttatcttctgtttttgcagaagtatatttggctgt
tgtgtgagacattatgagatactggcgattttctcgacctgaagagtact
ttggtcactctacttgggtgacttggtacttattgtgttactttaaaatg
tgtttacttaatgggtgaggtttttttgtttttcttttctgttttaggtt
tggttttgtagactttaatagtgaggaagatgccaaagctgccaaggagg
ccatggaagatggagaaattgacggaaacaaagttaccttggactgggcc
aaacctaagggtgaaggtggctttggtggtcgaggtggaggcagaggagg
tttcggaggcagaggtggaggcagaggtggaagaggtggatttggaggaa
gaggccggggaggctttggaggtaaggaagggaaaggaactggaaacgga
ttcctaaacctgtgtcctaaccaaccaccttaaatgggaaggtcagtcct
aattgtatcaccctttgatgtttttccttcctataggtagaggaggcttc
cgaggcggcagaggaggatggggagattt
gaattctctctggaatgcatttatttttgtgtatgtatgtgttccagttt
acctgtgtatacaccacatgcatggcttgcagaggccagaagagggtatt
gggtcctgtcagtattctttgtaatgtgggtcaatcaaagaaaggggggt
actacagaatgtaattcagactctaaggcagcaggaatggaaccttgatc
agccatgcaaagatatttttattgttaaacaaaagctgttgggggggggt
gtaaaacaagttcctcatcccagagtccctaatctaatctgtttttcctg
aaggaaaacctcgggcctctgcaactttagtcccattgtgtagtgtttgc
agtgcgtaacaatagaagaccttccaggtgtgccaggagtgtcccctgac
caaggtcatgcaaagactgaaatgctccttcagaacaataagtccataga
caacagaaaacaatcactgatttctacaatgatttcttcaaggtcaaggc
acttccagaaaactactgtcactgatgtctaccctagtcactgatgtcta
ccctggagacagtgaaaagcaactgttttcctttctgaggtttacccttt
agtgattctactagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88247229_88247907
seq2: B6Ng01-174G10.b_44_722 (reverse)

seq1  AAGTCTCCCCCTCCTCCTCTGCCGCCTCGGAAGCCTCCTCTACCTATAGG  50
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCCCATCCTCCTCTGCCGCCTCGGAAGCCTCCTCTACCTATAGG  50

seq1  AAGGAAAAACATCAAAGGGTGATACAATTAGGACTGACCTTCCCATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAACATCAAAGGGTGATACAATTAGGACTGACCTTCCCATTTAA  100

seq1  GGTGGTTGGTTAGGACACAGGTTTAGGAATCCGTTTCCAGTTCCTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGGTTAGGACACAGGTTTAGGAATCCGTTTCCAGTTCCTTTCCC  150

seq1  TTCCTTACCTCCAAAGCCTCCCCGGCCTCTTCCTCCAAATCCACCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACCTCCAAAGCCTCCCCGGCCTCTTCCTCCAAATCCACCTCTTC  200

seq1  CACCTCTGCCTCCACCTCTGCCTCCGAAACCTCCTCTGCCTCCACCTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCCTCCACCTCTGCCTCCGAAACCTCCTCTGCCTCCACCTCGA  250

seq1  CCACCAAAGCCACCTTCACCCTTAGGTTTGGCCCAGTCCAAGGTAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAAGCCACCTTCACCCTTAGGTTTGGCCCAGTCCAAGGTAACTTT  300

seq1  GTTTCCGTCAATTTCTCCATCTTCCATGGCCTCCTTGGCAGCTTTGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGTCAATTTCTCCATCTTCCATGGCCTCCTTGGCAGCTTTGGCAT  350

seq1  CTTCCTCACTATTAAAGTCTACAAAACCAAACCTAAAACAGAAAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCACTATTAAAGTCTACAAAACCAAACCTAAAACAGAAAAGAAAA  400

seq1  ACAAAAAAACCTCACCCATTAAGTAAACACATTTTAAAGTAACACAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACCTCACCCATTAAGTAAACACATTTTAAAGTAACACAATAA  450

seq1  GTACCAAGTCACCCAAGTAGAGTGACCAAAGTACTCTTCAGGTCGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGTCACCCAAGTAGAGTGACCAAAGTACTCTTCAGGTCGAGAAA  500

seq1  ATCGCCAGTATCTCATAATGTCTCACACAACAGCCAAATATACTTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCAGTATCTCATAATGTCTCACACAACAGCCAAATATACTTCTGCA  550

seq1  AAAACAGAAGATAAGTGCCAGTTCTGTGAATTCTCTCTTCTTCTCGTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAGATAAGTGCCAGTTCTGTGAATTCTCTCTTCTTCTCGTGCG  600

seq1  AATCCATAATCTATCACTGATGGACAGAAAGGAGCTCAATGAGAAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAATCTATCACTGATGGACAGAAAGGAGCTCAATGAGAAGATAC  650

seq1  TGCAGACCCAAGTTCTCCATGCAGAATTC  679
      |||||||||||||||||||||||||||||
seq2  TGCAGACCCAAGTTCTCCATGCAGAATTC  679

seq1: chr1_88084209_88084822
seq2: B6Ng01-174G10.g_72_687

seq1  GAATTCTCTCTGGAATGCATTTATTTTTGTGTATGTATGTGTTCCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGGAATGCATTTATTTTTGTGTATGTATGTGTTCCAGTTT  50

seq1  ACCTGTGTATACACCACATGCATGGCTTGCAGAGGCCAGAAGAGGGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTATACACCACATGCATGGCTTGCAGAGGCCAGAAGAGGGTATT  100

seq1  GGGTCCTGTCAGTATTCTTTGTAATGTGGGTCAATCAAAGAAAGGGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGTCAGTATTCTTTGTAATGTGGGTCAATCAAAGAAAGGGGGGT  150

seq1  ACTACAGAATGTAATTCAGACTCTAAGGCAGCAGGAATGGAACCTTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAATGTAATTCAGACTCTAAGGCAGCAGGAATGGAACCTTGATC  200

seq1  AGCCATGCAAAGATATTTTTATTGTTAAACAAAAGCTGTTGGGGGGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCAAAGATATTTTTATTGTTAAACAAAAGCTGTTGGGGGGGGGT  250

seq1  GTAAAACAAGTTCCTCATCCCAGAGTCCCTAATCTAATCTGTTTTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAAGTTCCTCATCCCAGAGTCCCTAATCTAATCTGTTTTTCCTG  300

seq1  AAGGAAAACCTCGGGCCTCTGCAACTTTAGTCCCATTGTGTAGTGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACCTCGGGCCTCTGCAACTTTAGTCCCATTGTGTAGTGTTTGC  350

seq1  AGTGCGTAACAATAGAAGACCTTCCAGGTGTGCCAGGAGTGTCCCCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGTAACAATAGAAGACCTTCCAGGTGTGCCAGGAGTGTCCCCTGAC  400

seq1  CAAGGTCATGCAAAGACTGAAAAGCTCCTTCAGAACAATAAGTCCATAGA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGGTCATGCAAAGACTGAAATGCTCCTTCAGAACAATAAGTCCATAGA  450

seq1  CAACAGAAAACAATCACTGATTTCTACAATGATTTCTTCAAGGTCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAACAATCACTGATTTCTACAATGATTTCTTCAAGGTCAAGGC  500

seq1  ACTTCCAGAAAACTACTGTCACTGATGTCTACCCTAGTCACTGATGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGAAAACTACTGTCACTGATGTCTACCCTAGTCACTGATGTCTA  550

seq1  CCCTGGAGACAGTGAAAAGCAACTGTTT--CCTTCTGAGGTTTACCCTAG  598
      ||||||||||||||||||||||||||||  | ||||||||||||||||  
seq2  CCCTGGAGACAGTGAAAAGCAACTGTTTTCCTTTCTGAGGTTTACCCTTT  600

seq1  AGTGATTCTACTAGCA  614
      ||||||||||||||||
seq2  AGTGATTCTACTAGCA  616