BAC Information

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BAC

Clone NameB6Ng01-174H09
Chromosome1 (Build37)
Map Location 81,383,841 - 81,507,709
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174H09.bB6Ng01-174H09.g
ACCGA002534GA002535
length1,109966
definitionB6Ng01-174H09.b B6Ng01-174H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,506,596 - 81,507,709)(81,383,841 - 81,384,571)
sequence
gaattcttttttgaacaatatcctagaaatatccttgtgatggttcaact
agagaatatttattaagaaggtaagaaatctgcttatcagccaaaggact
ttgccaaaatttaaatctttaggctgtcatgcagaactgcagtatttttt
tcctttgacaatgctgaaggcaaatgactctctactctctaaggaccact
tccccaggaggaaggaccacatttattgatcactgaaacttgaaggtctc
tcttttttgaggtgttctttttatgagtctgttactttatcatataatta
ttccagctctgactttgcctctgggctctttgaattgtgataaaacagct
ggtccatgacaagttgccagagttaacagccgcccacccgtcacactcca
ctgccaaccacgacaccagtgatgaacgcaatcccagctttaaatgggca
catttttttttaaacatcacaaaactgtctccatgacattgggctgtcaa
gtagcaaagaacacatgcacaatgacctgtatctaattcatcatttcctt
aatgcttgtctcattgtgtctcttcgtaataaccaaaaggtcattcatat
taaagggcaggcttgagcagcacatgcagaagaaagcatactttaagaac
cacttagacaatatgacaaatgataagaaagaagaaacaatagataccct
atctaacagactctaggacaagtaagacttgtagcgaactggaactggga
aaatagtgcatttctgtagtacatgcaacaagctacagaaagaggaacaa
atgtggtgggaatgtaaattatcctattcattttctttaagtgaaatatc
accctatgcaacattgtccataataatcacaaaataaaaacggatcccta
atggttcaaaaatctaatgctgtgttttgttacatagcacttatatttga
aaacctaaataccatattcaggctttctttttgcttttaaaatttgacct
ctttctttccagcccaaggaatctatgaggaagaggaggtgaagagactg
tagagccagagtgagggatactccaaggaaacagtgtcctccagaaggac
cagttctga
gaattctttgtttacctctgtaccccattttttaatggggttatttgaat
ttctggagttcagcttcttgagctcattgtatatattggatatttgtccc
ctatcagatttaggattggtaaaaattctttcccaatctgttggtggcca
ttttgtcttactgacagtatcttttgccctacagaagctttgcaatttta
agaggttccatttgtccattcttgattttacagcacaggccattgctgtt
ctgtttaggaagttttcccctgtgcccatatctttgagtcctttccccac
tttctcctctataaatttcagtgtctctggttttatgttgagttctttga
tccacttagacttgagctttgtacaaggagataaggatggaccaattcac
attcttctaaatgataaccaccagttgtgcaggcaccattcattgaaaat
gctgtcttttttccactggatgattttagctcccttgtcaaagatcgagt
aaccatatgtgtgtgggttcatttataggtcttcaattctattccactga
tctacctgtctgtcactgtaccatttccatgcagtttttatcacaattgt
tctgtagtacagcttgaggtcaggcatggtgattccagcagaggttcttt
tattgttgagaatagtttttgctatcctaggttttttgttatttcaaatg
aatttgcaaattgccctttctaactcagtgaagaattttttcatattctt
aattttattgttcaataattttattaattgattgatattaattgatatta
aagaaaggatgcacccacactcatgtttttccattcacatatacatagat
atgcctgggggtaatgtttatgtactgggaactgggaattcctcccaaag
tgctcttattcattttaacaggcataacatcaggacttcctgagatctga
aattgttattttactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81506596_81507709
seq2: B6Ng01-174H09.b_44_1152 (reverse)

seq1  TCAGAACTGTTCTTTCTGGAAGACACTGTTTCCTTGGAGTTATCCCTCAC  50
      ||||||||| || ||||||| |||||||||||||||||| ||||||||||
seq2  TCAGAACTGGTCCTTCTGGAGGACACTGTTTCCTTGGAG-TATCCCTCAC  49

seq1  TTCTGGCTCTTACAGTCTCTTCACCTCCTCTTCCTCATAGATTCCTTGGG  100
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TCTGGCTC-TACAGTCTCTTCACCTCCTCTTCCTCATAGATTCCTTGGG  97

seq1  CTTGAAAGAAAGAGGTCAAATTTTTAAAAAGCAAAAAGAAAGCCTGAATA  150
      || |||||||||||||||||||||  ||||||||||||||||||||||||
seq2  CTGGAAAGAAAGAGGTCAAATTTT--AAAAGCAAAAAGAAAGCCTGAATA  145

seq1  TGGTATTTAGGTTTTCAAATATAAAGTGCTATGTAACAAAACACAGCATT  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGTATTTAGGTTTTCAAATAT-AAGTGCTATGTAACAAAACACAGCATT  194

seq1  AGATTTTTGAACCA-TAAGGATCCGTTTTTATTTTGTGATTATTATGGAC  249
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  AGATTTTTGAACCATTAGGGATCCGTTTTTATTTTGTGATTATTATGGAC  244

seq1  AATGTTGCATAGGGTGATATTTCACTTAAAGAAAATGAATAGGATAATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCATAGGGTGATATTTCACTTAAAGAAAATGAATAGGATAATTT  294

seq1  ACATTCCCACCACATTTGTTCCTCTTTCTGTAGCTTGTTGCATGTACTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCACCACATTTGTTCCTCTTTCTGTAGCTTGTTGCATGTACTAC  344

seq1  AGAAATGCACTATTTTCCCAGTTCCAGTTCGCTACAAGTCTTACTTGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCACTATTTTCCCAGTTCCAGTTCGCTACAAGTCTTACTTGTCC  394

seq1  TAGAGTCTGTTAGATAGGGTATCTATTGTTTCTTCTTTCTTATCATTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTGTTAGATAGGGTATCTATTGTTTCTTCTTTCTTATCATTTGT  444

seq1  CATATTGTCTAAGTGGTTCTTAAAGTATGCTTTCTTCTGCATGTGCTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTCTAAGTGGTTCTTAAAGTATGCTTTCTTCTGCATGTGCTGCT  494

seq1  CAAGCCTGCCCTTTAATATGAATGACCTTTTGGTTATTACGAAGAGACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGCCCTTTAATATGAATGACCTTTTGGTTATTACGAAGAGACAC  544

seq1  AATGAGACAAGCATTAAGGAAATGATGAATTAGATACAGGTCATTGTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACAAGCATTAAGGAAATGATGAATTAGATACAGGTCATTGTGCA  594

seq1  TGTGTTCTTTGCTACTTGACAGCCCAATGTCATGGAGACAGTTTTGTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTGCTACTTGACAGCCCAATGTCATGGAGACAGTTTTGTGAT  644

seq1  GTTTAAAAAAAAATGTGCCCATTTAAAGCTGGGATTGCGTTCATCACTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAAAAATGTGCCCATTTAAAGCTGGGATTGCGTTCATCACTGG  694

seq1  TGTCGTGGTTGGCAGTGGAGTGTGACGGGTGGGCGGCTGTTAACTCTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGGTTGGCAGTGGAGTGTGACGGGTGGGCGGCTGTTAACTCTGGC  744

seq1  AACTTGTCATGGACCAGCTGTTTTATCACAATTCAAAGAGCCCAGAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCATGGACCAGCTGTTTTATCACAATTCAAAGAGCCCAGAGGCA  794

seq1  AAGTCAGAGCTGGAATAATTATATGATAAAGTAACAGACTCATAAAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAGCTGGAATAATTATATGATAAAGTAACAGACTCATAAAAAGA  844

seq1  ACACCTCAAAAAAGAGAGACCTTCAAGTTTCAGTGATCAATAAATGTGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAAAAAAGAGAGACCTTCAAGTTTCAGTGATCAATAAATGTGGT  894

seq1  CCTTCCTCCTGGGGAAGTGGTCCTTAGAGAGTAGAGAGTCATTTGCCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCTGGGGAAGTGGTCCTTAGAGAGTAGAGAGTCATTTGCCTTC  944

seq1  AGCATTGTCAAAGGAAAAAAATACTGCAGTTCTGCATGACAGCCTAAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTCAAAGGAAAAAAATACTGCAGTTCTGCATGACAGCCTAAAGA  994

seq1  TTTAAATTTTGGCAAAGTCCTTTGGCTGATAAGCAGATTTCTTACCTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTGGCAAAGTCCTTTGGCTGATAAGCAGATTTCTTACCTTCT  1044

seq1  TAATAAATATTCTCTAGTTGAACCATCACAAGGATATTTCTAGGATATTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATATTCTCTAGTTGAACCATCACAAGGATATTTCTAGGATATTG  1094

seq1  TTCAAAAAAGAATTC  1114
      |||||||||||||||
seq2  TTCAAAAAAGAATTC  1109

seq1: chr1_81383841_81384571
seq2: B6Ng01-174H09.g_304_1032

seq1  GGCCATTGCTGTTCTGTTTAGGAAGTTTTCCCCTGTGCCCATATCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGCTGTTCTGTTTAGGAAGTTTTCCCCTGTGCCCATATCTTTGA  50

seq1  GTCCTTTCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATG  100

seq1  TTGAGTTCTTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGGA  150

seq1  TGGACCAATTCACATTCTTCTAAATGATAACCACCAGTTGTGCAGGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAATTCACATTCTTCTAAATGATAACCACCAGTTGTGCAGGCACC  200

seq1  ATTCATTGAAAATGCTGTCTTTTTTCCACTGGATGATTTTAGCTCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGAAAATGCTGTCTTTTTTCCACTGGATGATTTTAGCTCCCTTG  250

seq1  TCAAAGATCGAGTAACCATATGTGTGTGGGTTCATTTATAGGTCTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCGAGTAACCATATGTGTGTGGGTTCATTTATAGGTCTTCAAT  300

seq1  TCTATTCCACTGATCTACCTGTCTGTCACTGTACCATTTCCATGCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCACTGATCTACCTGTCTGTCACTGTACCATTTCCATGCAGTTT  350

seq1  TTATCACAATTGTTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAATTGTTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCA  400

seq1  GCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTAGGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTAGGTTTTTT  450

seq1  GTTATTTCAAATGAATTTGCAAATTGCCCTTTCTAACTCAGTGAAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCAAATGAATTTGCAAATTGCCCTTTCTAACTCAGTGAAGAATT  500

seq1  TTTTCATATTCTTAATTTTATTGTTCAATAATTTTATTAATTGATTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTCTTAATTTTATTGTTCAATAATTTTATTAATTGATTGATA  550

seq1  TTAATTGATATTAAAGAAAGGATGCAACCAACACTCATGTTTTT-CATTC  599
      ||||||||||||||||||||||||| ||| |||||||||||||| |||||
seq2  TTAATTGATATTAAAGAAAGGATGC-ACCCACACTCATGTTTTTCCATTC  599

seq1  ACATATACATAGATATG-CTTGGGGTAATGTTTATGTACTGGG-ACTGGG  647
      ||||||||||||||||| || |||||||||||||||||||||| ||||||
seq2  ACATATACATAGATATGCCTGGGGGTAATGTTTATGTACTGGGAACTGGG  649

seq1  AATTCCTCCCCAAAGTGCTCTTATTCATTTAAACAGGCCATTAACATCAG  697
      ||||||| |||||||||||||||||||||| |||||||   |||||||||
seq2  AATTCCT-CCCAAAGTGCTCTTATTCATTTTAACAGGC--ATAACATCAG  696

seq1  GACTTCCTGAGATCTGAAATTGTTTATTTTACTT  731
      |||||||||||||||||||||| |||||||||||
seq2  GACTTCCTGAGATCTGAAATTG-TTATTTTACTT  729