BAC Information

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BAC

Clone NameB6Ng01-174I11
Chromosome16 (Build37)1 (Build37)
Map Location 31,389,585 - 31,390,103158,311,155 - 158,311,849
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik
Downstream geneBdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174I11.bB6Ng01-174I11.g
ACCGA002585GA002586
length988695
definitionB6Ng01-174I11.b B6Ng01-174I11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,389,585 - 31,390,103)(158,311,155 - 158,311,849)
sequence
gaattccttacaatcccatgggacaaaaaatagttaaacgtgctcatcac
accttaaaaaattggctttttaaaacaaaagaggggcagctatttccccc
aaggtcaccaaaggcccaccttgcctttaccttatttgttctaaattttt
tgcaaactgatattaaaggtcagtctgcagcggatcgccattggcatcca
gttacttctaattcttatacattggtaaaatagaaggaccccctgactaa
cgaatggaagggtccagatccggttctaatctggggaaggggctcggttt
gtgttttttcacgagatgaagatagagcgcggtggctgccagagagatta
attcgtcagatgaacacagattctgactcttctcgtaagtatcattctga
ggactaaaattcctcttgtgcttaaaattcagctgggaacgaaagctccc
agaaaagctgttttcctgctactctctgagcctgctacccgacaggaggc
tagagattaacctcagctttactatttgcatttgaataaagtacctgact
tccccaaaagaatatctgctttcctactttctcactgtctagtctttgtt
tttcttttttttttttttttttgataaataaaaccaaacgtttatttaca
ccaaagaattccaacactggatctttcacatatgaaggacaaagtattat
atatatacacacagcaaggaacggcagggccataacaagagaactgatag
tttcccacaattacaggtctaccatctctggttcactggagatagtggct
ctgctcctgcctctcaaaaacacacttccaattctgagagcagggctcct
cactggatggcatgtgaagaaagggcaaggcagggggagaaaggacaaag
cttaaatgaacccagtgcggcacatcacccattagctcatagagtgctag
catgaacctatatggacatatttcttttttaaaaagca
gaattcacaggaaatgggtcaaaagttgagaagacatttttctttctaaa
caccactatggtagtggctttctgtgctacatggattaggaacgaggatt
ttccctttgcccacaggatttttgcatgggcaaaggcagggactgggaag
ccaggcagaaccaaatgtgaattctagacagtgacattatttaatctaaa
gtttatatttattatccataaaatagagaccctactagatagagtagtat
tttaacagttaggtcacaggagctggagaagtgactcagtggttaaaatt
ccttctaatctgcagagggttgagctggagttctgttcccagcacccatc
tggggtgatttacaagtgcccgtaactacagttccagggcatctgatgcc
ctctagtggcctaagggcacctgcacacacatgctacacaactcatacag
gcacacacacataaataaatttaaaaataaatactaaacaaaaatagtca
aatgagccgggcaggggtgatgcaggcctttaatcccagcacttgggagg
cagaggcaggtggatttctgagttcgagaggccagcctggtctacagagt
gagttccaggacagccagggcgatacagagaaaccctgtctcaaaaaaca
aacaaactaacaaaaaaaaaaacaaaaaacaaaagtagccaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31389585_31390103
seq2: B6Ng01-174I11.b_118_635 (reverse)

seq1  GAAAAACAAAATCTCGACAGTGAGAAAGTAGGAAAGCAGAAATTCTTTTG  50
      ||||||||||  || ||||||||||||||||||||||||| |||||||||
seq2  GAAAAACAAAGACTAGACAGTGAGAAAGTAGGAAAGCAGATATTCTTTTG  50

seq1  GGGAAGTCCGGGTACTTTATTTAAATGTAAATAGTAAAGCTGAGGTTAAT  100
      ||||||| | ||||||||||| ||||| ||||||||||||||||||||||
seq2  GGGAAGT-CAGGTACTTTATTCAAATGCAAATAGTAAAGCTGAGGTTAAT  99

seq1  CTCTAGCCTCCTGTCGGGTAGCAGGCCCAGAGAGTAGCAGGAAAACAGCG  150
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CTCTAGCCTCCTGTCGGGTAGCAGGCTCAGAGAGTAGCAGGAAAACAGCT  149

seq1  TTTCTGGGAGCTTTCATTCCCAGCTGAATTCTAAGCACAAGAGGAATTTT  200
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TTTCTGGGAGCTTTCGTTCCCAGCTGAATTTTAAGCACAAGAGGAATTTT  199

seq1  AGTCTTCAGAATGATACTTACAAGAAGAGTCAGAATCTGTGTTCATCTGA  250
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTCCTCAGAATGATACTTACGAGAAGAGTCAGAATCTGTGTTCATCTGA  249

seq1  CGAATTAATCTCTCTGGCAGCCACCGTGCTCTATCTTTATCTCGTGAAAA  300
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CGAATTAATCTCTCTGGCAGCCACCGCGCTCTATCTTCATCTCGTGAAAA  299

seq1  AACACAAACCGAGCCCCTTTTTCAGATTAGAACCGGATCTGGACCCTTCT  350
      |||||||||||||||||||   ||||||||||||||||||||||||||| 
seq2  AACACAAACCGAGCCCCTTCCCCAGATTAGAACCGGATCTGGACCCTTCC  349

seq1  ATTCACTAGTCAGTGGGTCCTTCTATTTTACCAATGCATAAGAATTAGAA  400
      ||||  ||||||| |||||||||||||||||||||| |||||||||||||
seq2  ATTCGTTAGTCAGGGGGTCCTTCTATTTTACCAATGTATAAGAATTAGAA  399

seq1  GTAACTGGATGCCAGTAGCGATCCACTGCAGACTGACCTTTAATATCAGT  450
      |||||||||||||| | ||||||| |||||||||||||||||||||||||
seq2  GTAACTGGATGCCAATGGCGATCCGCTGCAGACTGACCTTTAATATCAGT  449

seq1  TTGCAAAATATTTAGAACAAATAAGGTAAAGGCAAGATGAGCCTTTGGTG  500
      |||||||| ||||||||||||||||||||||||||| || ||||||||||
seq2  TTGCAAAAAATTTAGAACAAATAAGGTAAAGGCAAGGTGGGCCTTTGGTG  499

seq1  ACCTTGGGGGATATAGCTG  519
      ||||||||||| |||||||
seq2  ACCTTGGGGGAAATAGCTG  518

seq1: chr1_158311155_158311849
seq2: B6Ng01-174I11.g_67_761

seq1  GAATTCACAGGAAATGGGTCAAAAGTTGAGAAGACATTTTTCTTTCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAAATGGGTCAAAAGTTGAGAAGACATTTTTCTTTCTAAA  50

seq1  CACCACTATGGTAGTGGCTTTCTGTGCTACATGGATTAGGAACGAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTATGGTAGTGGCTTTCTGTGCTACATGGATTAGGAACGAGGATT  100

seq1  TTCCCTTTGCCCACAGGATTTTTGCATGGGCAAAGGCAGGGACTGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGCCCACAGGATTTTTGCATGGGCAAAGGCAGGGACTGGGAAG  150

seq1  CCAGGCAGAACCAAATGTGAATTCTAGACAGTGACATTATTTAATCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGAACCAAATGTGAATTCTAGACAGTGACATTATTTAATCTAAA  200

seq1  GTTTATATTTATTATCCATAAAATAGAGACCCTACTAGATAGAGTAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTTATTATCCATAAAATAGAGACCCTACTAGATAGAGTAGTAT  250

seq1  TTTAACAGTTAGGTCACAGGAGCTGGAGAAGTGACTCAGTGGTTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGTTAGGTCACAGGAGCTGGAGAAGTGACTCAGTGGTTAAAATT  300

seq1  CCTTCTAATCTGCAGAGGGTTGAGCTGGAGTTCTGTTCCCAGCACCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAATCTGCAGAGGGTTGAGCTGGAGTTCTGTTCCCAGCACCCATC  350

seq1  TGGGGTGATTCACAAGTGCCCGTAACTACAGTTCCAGGGCATCTGATGCC  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGATTTACAAGTGCCCGTAACTACAGTTCCAGGGCATCTGATGCC  400

seq1  CTCTAGTGGCCTAAGGGCACCTGCACACACATGCTACACAACTCATACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTGGCCTAAGGGCACCTGCACACACATGCTACACAACTCATACAG  450

seq1  GCACACACACATAAATAAATTTAAAAATAAATACTAAACAAAAATAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACATAAATAAATTTAAAAATAAATACTAAACAAAAATAGTCA  500

seq1  AATGAGCCGGGCAGGGGTGATGCAGGCCTTTAATCCCAGCACTTGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCGGGCAGGGGTGATGCAGGCCTTTAATCCCAGCACTTGGGAGG  550

seq1  CAGAGGCAGGTGGATTTCTGAGTTCGAGAGGCCAGCCTGGTCTACAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATTTCTGAGTTCGAGAGGCCAGCCTGGTCTACAGAGT  600

seq1  GAGTTCCAGGACAGCCAGGGCGATACAGAGAAACCCTGTCTCAAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCAGGGCGATACAGAGAAACCCTGTCTCAAAAAACA  650

seq1  AACAAACAAACAAAAAAAAAAACAAAAAACAAAAGTAGCCAAATT  695
      ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACAAACTAACAAAAAAAAAAACAAAAAACAAAAGTAGCCAAATT  695