BAC Information

Click to search

BAC

Clone NameB6Ng01-174K04
Chromosome1 (Build37)
Map Location 3,396,097 - 3,550,142
singlet/doubletdoublet
Overlap geneXkr4, LOC100038975, LOC664792
Upstream genenone
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174K04.bB6Ng01-174K04.g
ACCGA002666GA002667
length764892
definitionB6Ng01-174K04.b B6Ng01-174K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,549,616 - 3,550,142)(3,396,097 - 3,396,553)
sequence
gaattcatgggtgataatggagcatccacaagagtgatgggtgctagtac
tcatatggacatcttattcagtccaggtactagctgatgtgatagtgtca
ccccatagtgtagcttttctcaccccttttaaatcaattcagaaactgac
agacatgcctatatatttgctttcatggtgattataaatcttgtcaggtt
gacaaaaaaatactaaccatcaaaaaactacatttttgtcaacctgacac
ctaaacatgccaaatctgagccatctcctgctcctggccataaacattcc
attttcatttcattgtgcacgatgcattcaatatatctctgagcatgccc
atagtgtttaacagtcccaacaatgtcaaaatgtctaacatcacttctaa
tattctatgtagcttttaaaatctaagccctttttgtacatacgtacaat
aaaaagaatcaagttaaacatctctaccatataatgtcaaagtaaatgca
tccatcacaaaagggaggcacaggaacatggcaaggaaagaccagaccaa
atgcctcttcaagtgggcatctgggactgataatggatcatataggctta
tgagtgtttaaaatcccctgacaaatcagttctgctacctgtaacactta
tagactcctctccatatatgcaatgtcccgaatcccttgtttctggaata
gccaccatctgagagtctccagttcaatgtaaattggccctctgcagctg
cacacacagtgtga

gaattcaatctttagtagcataggtcaaagtaaatctttgttcttcttac
attaatcccagttatttccttatcttaaagggaaactgcccagcacatct
ctagactggaaactcagctgttcccatactgccttggaatactgcaagtc
ttagagaattctcccagtgtttgagctgataatattatggattttttttt
ttttttagtttccccagtcttttactacagctgagctgtaaactgtggaa
actaaaaattataatggaaatgctgacaaagccttagtcaggcagcacca
agcaggcctgtccctctgcaatcagaggctcattgtgagctttgaagagt
gaatcttcatgagatttttatactagcaaacgttccacatactgatggaa
tcagttgcttcaaacgttctctcctctcttctctctctctctctctctct
ctctttcccgctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatagaactggagggtatcatcctgagtgaagtaacccaatcacaaagga
actcgcacaatatgtactcactgataagtggatattagcccaaaaactta
ggatacccaagatataagatacaacttgccaaacacatgaaattcaagaa
gaacgaagaccaaagtgtggaccctttaccctttcttagaaatgggaaca
aaacacccatggaaggagttacagagacaaaatttggagctgtgaggaaa
ggatgggaccatctagtgattgccatatgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagatttcgctgaaag
gacccagatatagctctccttgtgagactatgcctgggccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3549616_3550142
seq2: B6Ng01-174K04.b_41_567 (reverse)

seq1  GTTCCTGTGCCTCCCTTTTGTGATGGATGCATTTACTTTGACATTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTGCCTCCCTTTTGTGATGGATGCATTTACTTTGACATTATATG  50

seq1  GTAGAGATGTTTAACTTGATTCTTTTTATTGTACGTATGTACAAAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATGTTTAACTTGATTCTTTTTATTGTACGTATGTACAAAAAGGG  100

seq1  CTTAGATTTTAAAAGCTACATAGAATATTAGAAGTGATGTTAGACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTTTAAAAGCTACATAGAATATTAGAAGTGATGTTAGACATTTT  150

seq1  GACATTGTTGGGACTGTTAAACACTATGGGCATGCTCAGAGATATATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTGGGACTGTTAAACACTATGGGCATGCTCAGAGATATATTGA  200

seq1  ATGCATCGTGCACAATGAAATGAAAATGGAATGTTTATGGCCAGGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCGTGCACAATGAAATGAAAATGGAATGTTTATGGCCAGGAGCAG  250

seq1  GAGATGGCTCAGATTTGGCATGTTTAGGTGTCAGGTTGACAAAAATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGATTTGGCATGTTTAGGTGTCAGGTTGACAAAAATGTAG  300

seq1  TTTTTTGATGGTTAGTATTTTTTTGTCAACCTGACAAGATTTATAATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATGGTTAGTATTTTTTTGTCAACCTGACAAGATTTATAATCAC  350

seq1  CATGAAAGCAAATATATAGGCATGTCTGTCAGTTTCTGAATTGATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGCAAATATATAGGCATGTCTGTCAGTTTCTGAATTGATTTAAA  400

seq1  AGGGGTGAGAAAAGCTACACTATGGGGTGACACTATCACATCAGCTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAGAAAAGCTACACTATGGGGTGACACTATCACATCAGCTAGTA  450

seq1  CCTGGACTGAATAAGATGTCCATATGAGTACTAGCACCCATCACTCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTGAATAAGATGTCCATATGAGTACTAGCACCCATCACTCTTGT  500

seq1  GGATGCTCCATTATCACCCATGAATTC  527
      |||||||||||||||||||||||||||
seq2  GGATGCTCCATTATCACCCATGAATTC  527


seq1: chr1_3396097_3396553
seq2: B6Ng01-174K04.g_65_521

seq1  GAATTCAATCTTTAGTAGCATAGGTCAAAGTAAATCTTTGTTCTTCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTTAGTAGCATAGGTCAAAGTAAATCTTTGTTCTTCTTAC  50

seq1  ATTAATCCCAGTTATTTCCTTATCTTAAAGGGAAACTGCCCAGCACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCCAGTTATTTCCTTATCTTAAAGGGAAACTGCCCAGCACATCT  100

seq1  CTAGACTGGAAACTCAGCTGTTCCCATACTGCCTTGGAATACTGCAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGGAAACTCAGCTGTTCCCATACTGCCTTGGAATACTGCAAGTC  150

seq1  TTAGAGAATTCTCCCAGTGTTTGAGCTGATAATATTATGGATTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATTCTCCCAGTGTTTGAGCTGATAATATTATGGATTTTTTTTT  200

seq1  TTTTTTAGTTTCCCCAGTCTTTTACTACAGCTGAGCTGTAAACTGTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTTTCCCCAGTCTTTTACTACAGCTGAGCTGTAAACTGTGGAA  250

seq1  ACTAAAAATTATAATGGAAATGCTGACAAAGCCTTAGTCAGGCAGCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATTATAATGGAAATGCTGACAAAGCCTTAGTCAGGCAGCACCA  300

seq1  AGCAGGCCTGTCCCTCTGCAATCAGAGGCTCATTGTGAGCTTTGAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCTGTCCCTCTGCAATCAGAGGCTCATTGTGAGCTTTGAAGAGT  350

seq1  GAATCTTCATGAGATTTTTATACTAGCAAACGTTCCACATACTGATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCATGAGATTTTTATACTAGCAAACGTTCCACATACTGATGGAA  400

seq1  TCAGTTGCTTCAGTCTTTCTCTCCTCTCTTCTCTCTCTCTCTCTCTCTCT  450
      ||||||||||||  | ||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCTTCAAACGTTCTCTCCTCTCTTCTCTCTCTCTCTCTCTCTCT  450

seq1  CTCTTTC  457
      |||||||
seq2  CTCTTTC  457


| Home | SequenceCutter | Blast | Download |