BAC Information

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BAC

Clone NameB6Ng01-174N03
Chromosome1 (Build37)19 (Build37)
Map Location 180,326,493 - 180,327,35418,010,002 - 18,010,041
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
Downstream geneEfcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174N03.bB6Ng01-174N03.g
ACCGA002792GA002793
length873302
definitionB6Ng01-174N03.b B6Ng01-174N03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(180,326,493 - 180,327,354)(18,010,002 - 18,010,041)
sequence
gaatttccagattgagattttgagcagaatttcaggaaaggatctagggc
ctgagtggtaaacagagatgcttttcttcttggagaagccccttgtgttc
tctcccctggtttcctcacctgtaacttaggagtcaccttaacatgagga
atgccttataagacttgctatgatgaagcaaggctatccatgtgaaatgc
tggcacggttcccagaacactacacgtgctccagacattagtattcctgg
ccctggagtcatgtgagggtcatgtggacagagtccaaagacattaaacc
cagctacatgtaaagggagagctgtagactgcatccgtatttgaaactga
ggttataggttagaaaaaagttatatatccaaatctttatagctgggcta
ggggcatcgctcagggtcacagctcacttgcctaggagtctccaggctct
gggtttgattcctagtattgtggaaccaacaagcaagcaaataaaaccaa
agcaaagtgatgtagccggtgagcagtgtattggaatacacccttggatt
cctttgcccccaagagacacattgttttagttttccttggagtgtttgct
atttctcaatacaaatgtcaattataaataaaactttatttcaaagatca
cagttttggggcttgtcttagttaacatgatctatggctatcagaagaca
cccatgaccaatgcttatggaagaaagcatttaattggggtttttaatta
cagtttcagaggctgagttcatgaccatcatggtggtcatagaacatggc
agtaagtatgtggcatgtatactgttgggagcaatatctcagagctaata
tcttgatcccacaagttgaaggc
cagcacattgtaaaaaccacacaacatgacaaagcaggatttagcctttg
gatgtaaggatggttcaatatacaaaaggaatcaatgcaatagaccatat
tatcagagtgaaagataaaaaatcacatgatcatttcaacatatacagac
tagtatttgactgaattcaataaccattcatgaaaaggatacaatgtaag
aactagagaaaattattttaacatcataaaattcacagatgaaaatatat
gtccttagaggtatgccagggcaggaaggcaggagtgggtgggtgggtgg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180326493_180327354
seq2: B6Ng01-174N03.b_48_916

seq1  TTCCAGATTGAGATTTTGAGCAGAATTTCAGGAAAGGATCTAGGGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTGAGATTTTGAGCAGAATTTCAGGAAAGGATCTAGGGCCTGA  50

seq1  GTGGTAAACAGAGATGCTTTTCTTCTTGGAGAAGCCCCTTGTGTTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAACAGAGATGCTTTTCTTCTTGGAGAAGCCCCTTGTGTTCTCTC  100

seq1  CCCTGGTTTCCTCACCTGTAACTTAGGAGTCACCTTAACATGAGGAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTCCTCACCTGTAACTTAGGAGTCACCTTAACATGAGGAATGC  150

seq1  CTTATAAGACTTGCTATGATGAAGCAAGGCTATCCATGTGAAATGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAGACTTGCTATGATGAAGCAAGGCTATCCATGTGAAATGCTGGC  200

seq1  ACGGTTCCCAGAACACTACACGTGCTCCAGACATTAGTATTCCTGGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCCCAGAACACTACACGTGCTCCAGACATTAGTATTCCTGGCCCT  250

seq1  GGAGTCATGTGAGGGTCATGTGGACAGAGTCCAAAGACATTAAACCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATGTGAGGGTCATGTGGACAGAGTCCAAAGACATTAAACCCAGC  300

seq1  TACATGTAAAGGGAGAGCTGTAGACTGCATCCGTATTTGAAACTGAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTAAAGGGAGAGCTGTAGACTGCATCCGTATTTGAAACTGAGGTT  350

seq1  ATAGGTTAGAAAAAAGTTATATATCCAAATCTTTATAGCTGGGCTAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTAGAAAAAAGTTATATATCCAAATCTTTATAGCTGGGCTAGGGG  400

seq1  CATCGCTCAGGGTCACAGCTCACTTGCCTAGGAGTCTCCAGGCTCTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTCAGGGTCACAGCTCACTTGCCTAGGAGTCTCCAGGCTCTGGGT  450

seq1  TTGATTCCTAGTATTGTGGAACCAACAAGCAAGCAAATAAAACCAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCTAGTATTGTGGAACCAACAAGCAAGCAAATAAAACCAAAGCA  500

seq1  AAGTGATGTAGCCGGTGAGCAGTGTATTGGAATACACCCTTGGATTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGTAGCCGGTGAGCAGTGTATTGGAATACACCCTTGGATTCCTT  550

seq1  TGCCCCCAAGAGACACATTGTTTTAGTTTTCCTTGGAGTGTTTGCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAAGAGACACATTGTTTTAGTTTTCCTTGGAGTGTTTGCTATTT  600

seq1  CTCAATACAAATGTCAA-TATAAATAAAACTTTATTTCAAAGATCACAG-  648
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  CTCAATACAAATGTCAATTATAAATAAAACTTTATTTCAAAGATCACAGT  650

seq1  TTTGGGGCTTGTCTTAGTTAACATGATCTATGGCTATCAGAAGACA-CCA  697
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTGGGGCTTGTCTTAGTTAACATGATCTATGGCTATCAGAAGACACCCA  700

seq1  TGACCAAGGCTTATGGAAGAAAGCATTTAATTGGGG-TTTTAATTACAGT  746
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  TGACCAATGCTTATGGAAGAAAGCATTTAATTGGGGTTTTTAATTACAGT  750

seq1  TTCAGAGGCTGAGTTCATGACCATCATGGTGGTCATAGAACATGGCAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGCTGAGTTCATGACCATCATGGTGGTCATAGAACATGGCAGTA  800

seq1  GGCAGGTGGCAGGCATACTGTT-GGAGCAATATCTCAGAGCTTATATC-T  844
       | | |||||| | |||||||| ||||||||||||||||||| ||||| |
seq2  AGTATGTGGCATGTATACTGTTGGGAGCAATATCTCAGAGCTAATATCTT  850

seq1  GAT-CCACAAGTTGAAGGC  862
      ||| |||||||||||||||
seq2  GATCCCACAAGTTGAAGGC  869

seq1: chr19_18010002_18010041
seq2: B6Ng01-174N03.g_340_379 (reverse)

seq1  ACCCACCTACCCACCCACTCCTGTCTTCCTGCCCTGGCAT  40
      ||||||| ||||||||||||||| ||||||||||||||||
seq2  ACCCACCCACCCACCCACTCCTGCCTTCCTGCCCTGGCAT  40