BAC Information

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BAC

Clone NameB6Ng01-174N04
Chromosome1 (Build37)
Map Location 113,005,251 - 113,144,061
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh7, LOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174N04.bB6Ng01-174N04.g
ACCGA002794GA002795
length1,056736
definitionB6Ng01-174N04.b B6Ng01-174N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,005,251 - 113,006,301)(113,143,498 - 113,144,061)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggacctggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctta
aaaaattggacatagtactattggaggatccagcaatacctcttctggcc
atatgtccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gccccccaacagatgaatggatacagatcatgtcactcaaacacaaagct
tcagcccttcagtgttttcgtttttggggagaattaaagtgtaaatttct
ggcaggaaccttttctcattgtatgccaattaaagaaaatttgcattact
ggcttttaaaaagctacatagtgaacatttctatattgcaatgccatttg
ttgtaaatcaaagcattccagtaggccaacagaagctttataaggctatg
ttttggttatattttttaaagggaccttaataaagttccttagtaaatac
aaaattaaggaaacaaagaattacagacaaatgagttttaaagaaatgac
caaatatggaaacatgcaatggtcttattttttatagtcattgtggtaat
tctgactatataatcaaaactttttattttttaaattattactcaatgaa
tcagatactttattgtgaatagtgaaatgggttgtgtctcagaaaattaa
aacaaaccactgttttagacaaataattgtgagtgtgtttagtaattaaa
tttgcatctaggcctctttcccggaatagtaaattcactcatggcttttc
attttgccctagattatccagttcttaattaaggtcaccaaaccctttac
tttata
gaattctaaaaagtctttaatgtcttttttatttcatcactttcacaata
gtcattaagtagtgtttccaggaatttgtagggtttgtatagtttacatg
cgtttgtgggctttctgttgtctctgttattgttgaagtacagctttagt
ccatgatgacccgataaaatacaatgggttatttgtatttttttaatccc
ttgaggcttcttttgtgatggaatatatgaacattttagagaatgctctg
tgaggtgctgaggacaaggtataatcttttgtgcttgggtgaaatgttct
gcagatatatgttcaggccatttaacacataatatctgttagcttcatta
tttgcctgtttattgtcagtctcaataatttttccattagttagagtgtg
atagtgacgtcacccattattaatatgtgaggcttgatgtgtaatttaag
ctttagtaatacttcttttgtgaacatgggtgcccttacatttgaggcaa
aaatgtttacaacagagatgtcaccttggttgatttagcctttgatgagt
ataaagtatctgtctccatctcctgtggttaattttggtgaaaagtctat
tttactaagtatcagaattgatactcaagcttggttgtaagttccatttg
tttgccttggtgttgtctgtatgctcctgacactgagagtacttctctgg
ggtggccaggagatctaatggaacagtaattctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113005251_113006301
seq2: B6Ng01-174N04.b_44_1099

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGTGAGGACCTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGAGGACCTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTA  250

seq1  AAAAATTGGACATAGTACTATTGGAGGATCCAGCAATACCTCTTCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGACATAGTACTATTGGAGGATCCAGCAATACCTCTTCTGGCC  300

seq1  ATATGTCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  400

seq1  GCCCCCCAACAGATGAATGGATACAGATCATGTCACTCAAACACAAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCAACAGATGAATGGATACAGATCATGTCACTCAAACACAAAGCT  450

seq1  TCAGCCCTTCAGTGTTTTCGTTTTTGGGGAGAATTAAAGTGTAAATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTTCAGTGTTTTCGTTTTTGGGGAGAATTAAAGTGTAAATTTCT  500

seq1  GGCAGGAACCTTTTCTCATTGTATGCCAATTAAAGAAAATTTGCATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACCTTTTCTCATTGTATGCCAATTAAAGAAAATTTGCATTACT  550

seq1  GGCTTTTAAAAAGCTACATAGTGAACATTTCTATATTGCAATGCCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAAAAAGCTACATAGTGAACATTTCTATATTGCAATGCCATTTG  600

seq1  TTGTAAATCAAAGCATTCCAGTAGGCCAACAGAAGCTTTATAAGGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATCAAAGCATTCCAGTAGGCCAACAGAAGCTTTATAAGGCTATG  650

seq1  -TTTGGTTATATTTTTTAAAGGGACCTTAATAAAGTTCCTTAGTAAATAC  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTATATTTTTTAAAGGGACCTTAATAAAGTTCCTTAGTAAATAC  700

seq1  AAAATTAAGGAAACAAAGAATTACAGACAAATGAG-TTTAAAGAAATGAC  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAATTAAGGAAACAAAGAATTACAGACAAATGAGTTTTAAAGAAATGAC  750

seq1  CAAATATGGAAACATGCAATGGTCTTA-TTTTTATAGTCATTGTGGTAAT  797
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAATATGGAAACATGCAATGGTCTTATTTTTTATAGTCATTGTGGTAAT  800

seq1  TCTGACTATATAATCAAAAC-TTTTATTTTTTAAATTATTACTCAATGAA  846
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGACTATATAATCAAAACTTTTTATTTTTTAAATTATTACTCAATGAA  850

seq1  TCAGATAC-TTATTGTGAATAGTGAAAT-GGTTGTGTCTCAG-AAATTAA  893
      |||||||| ||||||||||||||||||| ||||||||||||| |||||||
seq2  TCAGATACTTTATTGTGAATAGTGAAATGGGTTGTGTCTCAGAAAATTAA  900

seq1  AACAAACCACTG-TTTAGACAAATTATTGTGAGTGTTGTTTAGTAATTTA  942
      |||||||||||| ||||||||||| |||||||||| |||||||||| |||
seq2  AACAAACCACTGTTTTAGACAAATAATTGTGAGTG-TGTTTAGTAA-TTA  948

seq1  ATTTTGCATCTAGGCCTCTTTCCTGTAATATTTAATTTCACTCAT-GCTT  991
      | ||||||||||||||||||||| | ||||  ||| ||||||||| ||||
seq2  AATTTGCATCTAGGCCTCTTTCCCGGAATA-GTAAATTCACTCATGGCTT  997

seq1  TTCTATTTTGCCTTAGATTATCCAGTTCTTAATTAAGGTCA-CAAAACCT  1040
      ||| |||||||| |||||||||||||||||||||||||||| |||| |||
seq2  TTC-ATTTTGCCCTAGATTATCCAGTTCTTAATTAAGGTCACCAAACCCT  1046

seq1  TTACATTTATA  1051
      |||| ||||||
seq2  TTAC-TTTATA  1056

seq1: chr1_113143498_113144061
seq2: B6Ng01-174N04.g_237_802 (reverse)

seq1  AACAGAA-TACTGTTCCCTTAGATCTCCTGGCCA-CCCAGAGAAGTACTC  48
      ||||||| ||||||||| |||||||||||||||| |||||||||||||||
seq2  AACAGAATTACTGTTCCATTAGATCTCCTGGCCACCCCAGAGAAGTACTC  50

seq1  TCAGTGTCAGGAGCATACAGACAACACCAAGGCAAACAAATGGAACTTAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCAGGAGCATACAGACAACACCAAGGCAAACAAATGGAACTTAC  100

seq1  AACCAAGCTTGAGTATCAATTCTGATACTTAGTAAAATAGACTTTTCACC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCTTGAGTATCAATTCTGATACTTAGTAAAATAGACTTTTCACC  150

seq1  AAAATTAACCACAGGAGATGGAGACAGATACTTTATACTCATCAAAGGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACCACAGGAGATGGAGACAGATACTTTATACTCATCAAAGGCT  200

seq1  AAATCAACCAAGGTGACATCTCTGTTGTAAACATTTTTGCCTCAAATGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCAAGGTGACATCTCTGTTGTAAACATTTTTGCCTCAAATGTA  250

seq1  AGGGCACCCATGTTCACAAAAGAAGTATTACTAAAGCTTAAATTACACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCCATGTTCACAAAAGAAGTATTACTAAAGCTTAAATTACACAT  300

seq1  CAAGCCTCACATATTAATAATGGGTGACGTCACTATCACACTCTAACTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTCACATATTAATAATGGGTGACGTCACTATCACACTCTAACTAA  350

seq1  TGGAAAAATTATTGAGACTGACAATAAACAGGCAAATAATGAAGCTAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATTATTGAGACTGACAATAAACAGGCAAATAATGAAGCTAACA  400

seq1  GATATTATGTGTTAAATGGCCTGAACATATATCTGCAGAACATTTCACCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATGTGTTAAATGGCCTGAACATATATCTGCAGAACATTTCACCC  450

seq1  AAGCACAAAAGATTATACCTTGTCCTCAGCACCTCACAGAGCATTCTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAAGATTATACCTTGTCCTCAGCACCTCACAGAGCATTCTCTA  500

seq1  AAATGTTCATATATTCCATCACAAAAGAAGCCTCAAGGGATTAAAAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCATATATTCCATCACAAAAGAAGCCTCAAGGGATTAAAAAAAT  550

seq1  ACAAATAACCCATTGT  564
      ||||||||||||||||
seq2  ACAAATAACCCATTGT  566