BAC Information

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BAC

Clone NameB6Ng01-175C11
Chromosome1 (Build37)
Map Location 142,664,679 - 142,665,457
singlet/doubletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175C11.bB6Ng01-175C11.g
ACCGA003038GA003039
length1,203957
definitionB6Ng01-175C11.b B6Ng01-175C11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtaaatgtacc
acattttctgtattcattcctctgttgagggacatcttggttattttcag
ctcctagctattataaataaggctgctatgaacatagtggagcatgtgtc
cttattacatgttggagcaacttctgggtctatgctcaagagtggtatta
gtgggtactcaggtagtactatgtccagttttcttaagaaccaccaaact
gatttccagagtggctataaaagcttgcaatcccaccaacaatggaggag
tgttcctcctcctccacaacctcatcagcatctgctgtcacctgaatttt
ttattatagccattctaactggtgtgaggtggattctcagggttgttttg
atttgcatttttctgatgactaggatgttgaacattttttcaggtgcttc
tcagccatatgttattcctcaattgagaattctttgtttagctgtgtacc
ccatttttaatagagttatttgttttttgtttttttttttggagtctaac
ttcttgtgttctttgtatatattggacattagccctctatagaatgtagg
attggtaaagatcttttcccaatgtgttgcttgcctttttgtcttatcga
cagtgtcctttgccttacagaagctttgcaattttatgaagtcccatttt
tttattttgatcttagaatctgctgttctgttcaggaaaatttcccctgt
gcccatgtgcttgaggctcttcctaactgtctcttctgtcagtttcatag
tatctggtattatgtggagaaccttgattcagttggagttgagctctgtg
caaggagataagtatggatcgatttgcattttcatacatgctaaccgcca
attgagccagcaccattgttgaaatgctggggttttttttgtttttgttt
gtttgtttgtttgttttttccccactgaatgtttttagctccttgtcaag
accaagtgatgataggtgtggagggttcattcctgggtcttcaatctatt
ccattatctacctgactgtcactgtaccaataccaggcagattttgtact
atgtcttacactggaggatacatcctaatcctctgtcttgctacctggtc
tgaccttagatcctgacattattaagtcctagtaaaggtaatgcatgtag
tac
gaattctcctatactggggcatagaaccttcacaggaccaagggtctctc
cttctctactacatatgcaactagagccatgagtcccaccatgtgttttc
tttgattggtgctttagttccaaggagctctggggtactggttagttcat
attgttgttcctcctatggggctgcaaaccccttcagccttggatacttt
ctctagccccttcactggggaccttgttctccgtccaatggatgactctg
agcatccacttctgtatttgtcatgcactggcagtgtctttcaggagagc
cctaatcatgctcctgtcagtgagctcttgttggtatctataatagtgtc
tggtttgggtggttgtttatgggatggatccctaagtggagcagtctatg
aatggtcattccttcaatctctgctccgaactttgtctctgtaactcctt
ccatgggtattttgtgcccccttctgagaaggattgaagtgtccacactt
tggtcttccttcttcttgagtttcatgtgtattgcaaattgtatcttggg
tattctgaatagctgggctaatatccacttatcagtgagtgcataacatg
ttgtgtttcttttgtgatttgagttacctcactcaggatgatatcctcca
gatgcatccataaatgattatacctaacacatttacttccccagtgggaa
gaaatatctataaaattgaaatttcctctaaacaaagaaatatgacattt
tacagtatttttagaatttgcttttatttttagaaaagagaagtcaatag
ggaaagaatttcataaaaagaagaaaaaagaataccactatctcttagga
aggaaactttaattttaatgttgaaattattgatttaagtatttcaatta
tactgcaacttcacttttgaaattaaaatggtataaattttagttatggc
aagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142664679_142665457
seq2: B6Ng01-175C11.g_228_1022

seq1  CCTATGGGGCTGCAAACCCCTTCAGCCTTGGATACTTTCTCTAGCCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGGCTGCAAACCCCTTCAGCCTTGGATACTTTCTCTAGCCCCTT  50

seq1  CACTGGGGACCTTGTTCTCCGTCCAATGGATGACTCTGAGCATCCACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGACCTTGTTCTCCGTCCAATGGATGACTCTGAGCATCCACTTC  100

seq1  TGTATTTGTCATGCACTGGCAGTGTCTTTCAGGAGAGCCCTAATCATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTCATGCACTGGCAGTGTCTTTCAGGAGAGCCCTAATCATGCT  150

seq1  CCTGTCAGTGAGCTCTTGTTGGTATCTATAATAGTGTCTGGTTTGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGTGAGCTCTTGTTGGTATCTATAATAGTGTCTGGTTTGGGTGG  200

seq1  TTGTTTATGGGATGGATCCCTAAGTGGAGCAGTCTATGAATGGTCATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATGGGATGGATCCCTAAGTGGAGCAGTCTATGAATGGTCATTCC  250

seq1  TTCAATCTCTGCTCCGAACTTTGTCTCTGTAACTCCTTCCATGGGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTCTGCTCCGAACTTTGTCTCTGTAACTCCTTCCATGGGTATTT  300

seq1  TGTGCCCCCTTCTGAGAAGGATTGAAGTGTCCACACTTTGGTCTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCCTTCTGAGAAGGATTGAAGTGTCCACACTTTGGTCTTCCTTC  350

seq1  TTCTTGAGTTTCATGTGTATTGCAAATTGTATCTTGGGTATTCTGAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTTCATGTGTATTGCAAATTGTATCTTGGGTATTCTGAATAG  400

seq1  CTGGGCTAATATCCACTTATCAGTGAGTGCATAACATG-TGTG-TTCTTT  448
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CTGGGCTAATATCCACTTATCAGTGAGTGCATAACATGTTGTGTTTCTTT  450

seq1  TGTGA-TTGAGTTACCTCACTCAGGATGATATCCTCCAGATGCATCCATA  497
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTGAGTTACCTCACTCAGGATGATATCCTCCAGATGCATCCATA  500

seq1  AATGATTATACCTAACACATTTACTT-CCCAGTGGGAAGAAATATCTAT-  545
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  AATGATTATACCTAACACATTTACTTCCCCAGTGGGAAGAAATATCTATA  550

seq1  AAATTGAAATTTCCTCT-AACAAAGAAATATGACA-TTTACAGTA-TTTT  592
      ||||||||||||||||| ||||||||||||||||| ||||||||| ||||
seq2  AAATTGAAATTTCCTCTAAACAAAGAAATATGACATTTTACAGTATTTTT  600

seq1  AGAA-TTGCTTTTATTTTTAG-AAAGAGAAGTCAATAGGGAAAGAA-TTC  639
      |||| |||||||||||||||| |||||||||||||||||||||||| |||
seq2  AGAATTTGCTTTTATTTTTAGAAAAGAGAAGTCAATAGGGAAAGAATTTC  650

seq1  AT-AAAAGAAG-AAAAAGAATA-CACTATCACTAAGGAGGAAAACATTAA  686
      || |||||||| |||||||||| ||||||| || |||| | |||| ||||
seq2  ATAAAAAGAAGAAAAAAGAATACCACTATCTCTTAGGAAGGAAACTTTAA  700

seq1  TTTTAATGTTAGAATTAGTGATTAAAGTATTTCAATTA-ACTGCAACTTC  735
      ||||||||||  ||||| ||||| |||||||||||||| |||||||||||
seq2  TTTTAATGTTGAAATTATTGATTTAAGTATTTCAATTATACTGCAACTTC  750

seq1  ACTTTTGAAATTAAAAT-GTATTAAATTTAGTAATTGCAAGCTCA  779
      ||||||||||||||||| |||| || |||||| || |||||||||
seq2  ACTTTTGAAATTAAAATGGTATAAATTTTAGTTATGGCAAGCTCA  795