BAC Information

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BAC

Clone NameB6Ng01-175D01
Chromosome1 (Build37)
Map Location 78,454,239 - 78,455,325
singlet/doubletsinglet
Overlap geneFarsb
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382
Downstream geneMogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175D01.bB6Ng01-175D01.g
ACCGA003065GA003066
length1,0711,089
definitionB6Ng01-175D01.b B6Ng01-175D01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttctctggtccaatctatttggagttgtgtaggcttcttgtatg
tttatgggcatctcattctttaggttagggaagttttcttctatagtttt
gttgaagataatgactggccctgtaagttgggaatctttgatctcttcta
tacctattatccttgggtttggtcttttcattgtgtcctgaatttcctgg
atgttttgggttaggatccttttctattttctttgatgctgtgttattgt
tttctatgttatcttctgcacctgagattctctcttctatctcttgtgtt
ctgttggtgatgcttgcgtctatgactcctgatctctttcctacgttttc
tatccccagggttgtctccctttgtgatttctttattgattttatttcca
gttttagatcctgggtggttttgtacaattccttcacctgtttggttgtg
ttttcctgtaattcttaaagggatttttgtgttttctttttaagggcttc
tagctgtttacccgtgttctcctgtatttctttaagggagttatttattc
ccctcttgttttagacagggtttctattcctgcacaaacatcatgaccat
gaaacaagttggggaggaaagaatttattcagcttacactttccacattg
ctgttcatcaccaaaggaagtcaggactggaactcaagcaggtcaggaag
caggagctgatgcagaggccatggagggatgttacttactggcttgcctt
ccctggcttgctcagcctgctttcttatagaacccaagactaccagccca
gagatggcaccacccacaaggggccttccccacttgatcactaattgaga
gaatgccacacagctggatctcatgggaaggcacttccccaactgaagct
cctttctctgttataactctagccctgtgtccaagttgacacacaaacca
gccagtacacctcttaaagtctctatcatcatcctgagatggtgatttta
aatcaaattcctggcttttctgatgtgtgaaggtatccagggctcactgt
tgtgggggaatactgggtttc
gaattctatagagcaaactgagttagagcatgaaatacttttaaactttg
agttaggcattgccctgtactaatctattttccatgttcttagtgctccc
aagaagatattgctgacaagcttggcctggatatctctgcaacaaaggca
gtgcacataagtaatcctaaaaccgctgagttccaggtaacaactgggta
aaagccgtctgtggttagtgactcaggggagcaagctctcctcacttgta
cctcaggggtgaatccctagaacattttaatggactttccttagataatt
tggagttggtccccctgcccctctgtctctctgtgtatgtattagtattg
aacccagagccgtgtgcttggtaagcaaatgtactattaattattaacca
gacagtgcagttagcttccttaaaaatatataatatttattattattatt
atttctgtctttgagatggtgtctttcactgtagcccaggttgtcctgga
actcattgtatagctcaggctggacttccaagtgctcacatttagcttac
tcttttattatcagatattatcttcatttacatttcaaatgttatcccct
ttcctggtttgccctccaaaagccccctcccctgccccttcccctgctca
cagcctagtctttgttgctacatcttgctggcttagccacccttacctgt
gtttttcacgtcataattgatatttacttaaaactcctgcttcctctctt
tcccattcatttgtagtaggtggatttaaaatgcactccgtgtctctcca
tatgccatcctgccagtttcgaacaactgttctttgtggctttcattgtc
ctcttgagtttattggcggtttcttacagggtttaggaagacttaatgga
atggtcctgcactagcaatcgtgttaaatgattcagagtatggactagga
tgttagctgtagacgtccatttcaagtatagcagctttgctaatagctga
ctgtctgtcttcctatgtttgtgaattctggcttgcttttcttggcgtat
gcagtccctgcattgttttgaccaatcttagaccaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78454239_78455325
seq2: B6Ng01-175D01.g_63_1151 (reverse)

seq1  CCTTTGGTTCTAAGATTTGTCAAA--CATGCA-GGACTGCATACG-CAAG  46
      ||||||| ||||||||| ||||||   ||||| |||||||||||| ||||
seq2  CCTTTGG-TCTAAGATTGGTCAAAACAATGCAGGGACTGCATACGCCAAG  49

seq1  -AAAGCAAGCCAGAATTCACATACATAGGAAGACAGACAGTCAGCTATTA  95
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAGCAAGCCAGAATTCACAAACATAGGAAGACAGACAGTCAGCTATTA  99

seq1  GCAAAGCTGCTATAACTTGAAATGGACGTCTACAGCTAACATCCTAGTCC  145
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTGCTAT-ACTTGAAATGGACGTCTACAGCTAACATCCTAGTCC  148

seq1  ATACTCTGAATCATTTAACACGATTGCTAGTGCAGGACCATTCCATTTAA  195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATACTCTGAATCATTTAACACGATTGCTAGTGCAGGACCATTCCA-TTAA  197

seq1  GTCTTCCTAAACCCTGTAAGAAACCGCCAATAAACTCAAGAGGACAATGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTAAACCCTGTAAGAAACCGCCAATAAACTCAAGAGGACAATGA  247

seq1  AAGCCACAAAGAACAGTTGTTCGAAACTGGCAGGATGGCATATGGAGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAAAGAACAGTTGTTCGAAACTGGCAGGATGGCATATGGAGAGA  297

seq1  CACGGAGTGCATTTTAAATCCACCTACTACAAATGAATGGGAAAGAGAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGTGCATTTTAAATCCACCTACTACAAATGAATGGGAAAGAGAGG  347

seq1  AAGCAGGAGTTTTAAGTAAATATCAATTATGACGTGAAAAACACAGGTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGTTTTAAGTAAATATCAATTATGACGTGAAAAACACAGGTAA  397

seq1  GGGTGGCTAAGCCAGCAAGATGTAGCAACAAAGACTAGGCTGTGAGCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTAAGCCAGCAAGATGTAGCAACAAAGACTAGGCTGTGAGCAGG  447

seq1  GGAAGGGGCAGGGGAGGGGGCTTTTGGAGGGCAAACCAGGAAAGGGGATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGCAGGGGAGGGGGCTTTTGGAGGGCAAACCAGGAAAGGGGATA  497

seq1  ACATTTGAAATGTAAATGAAGATAATATCTGATAATAAAAGAGTAAGCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAATGTAAATGAAGATAATATCTGATAATAAAAGAGTAAGCTA  547

seq1  AATGTGAGCACTTGGAAGTCCAGCCTGAGCTATACAATGAGTTCCAGGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGCACTTGGAAGTCCAGCCTGAGCTATACAATGAGTTCCAGGAC  597

seq1  AACCTGGGCTACAGTGAAAGACACCATCTCAAAGACAGAAATAATAATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGCTACAGTGAAAGACACCATCTCAAAGACAGAAATAATAATAA  647

seq1  TAATAAATATTATATATTTTTAAGGAAGCTAACTGCACTGTCTGGTTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATATTATATATTTTTAAGGAAGCTAACTGCACTGTCTGGTTAAT  697

seq1  AATTAATAGTACATTTGCTTACCAAGCACACGGCTCTGGGTTCAATACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAGTACATTTGCTTACCAAGCACACGGCTCTGGGTTCAATACTA  747

seq1  ATACATACACAGAGAGACAGAGGGGCAGGGGGACCAACTCCAAATTATCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACAGAGAGACAGAGGGGCAGGGGGACCAACTCCAAATTATCT  797

seq1  AAGGAAAGTCCATTAAAATGTTCTAGGGATTCACCCCTGAGGTACAAGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTCCATTAAAATGTTCTAGGGATTCACCCCTGAGGTACAAGTG  847

seq1  AGGAGAGCTTGCTCCCCTGAGTCACTAACCACAGACGGCTTTTACCCAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCTTGCTCCCCTGAGTCACTAACCACAGACGGCTTTTACCCAGT  897

seq1  TGTTACCTGGAACTCAGCGGTTTTAGGATTACTTATGTGCACTGCCTTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTGGAACTCAGCGGTTTTAGGATTACTTATGTGCACTGCCTTTG  947

seq1  TTGCAGAGATATCCAGGCCAAGCTTGTCAGCAATATCTTCTTGGGAGCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGATATCCAGGCCAAGCTTGTCAGCAATATCTTCTTGGGAGCAC  997

seq1  TAAGAACATGGAAAATAGATTAGTACAGGGCAATGCCTAACTCAAAGTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATGGAAAATAGATTAGTACAGGGCAATGCCTAACTCAAAGTTT  1047

seq1  AAAAGTATTTCATGCTCTAACTCAGTTTGCTCTATAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTTCATGCTCTAACTCAGTTTGCTCTATAGAATTC  1089