BAC Information

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BAC

Clone NameB6Ng01-175E22
Chromosome1 (Build37)
Map Location 116,111,865 - 116,112,981
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175E22.bB6Ng01-175E22.g
ACCGA003145GA003146
length1,1491,166
definitionB6Ng01-175E22.b B6Ng01-175E22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaaaacaatctacagcaaacc
agtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaa
aatcagggactagacaaggctgcccactttctccctacctttgcaacata
gtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggg
gatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgata
tgatagtatatataagtgaccctaaaaattccaccagagaactcctaaac
cgtgataaacagcttcggtgaagtatctggatataaaattaactcaaaca
agtcaatggcctttctctacacaaagaataaacaggctgagaaagaaatt
agggaaacaacacccttcacagtagtcacaaataatataaaatatctcgg
cgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagt
ctctgaagaaagaaattaaagaagatttcagaagatggaaagatctccca
tgctcatggatttggcaagatcaacattgtaaaaatgactatcttgccaa
aagcaatctacagattcaatgcaatccctatcaaaattccaactcaattc
ttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaa
acctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaa
tcaccatgcctgacctaaagctttactacagagcaattgtgataaaaact
gcatggtactggtatagagacagacaagtagaccaatggaatagaattga
agacccagaatgaacccacacacctatgggtcacttgatcttcgacaagg
gagataaaaccatccagtggaagaaagacagcatttttcaacaattggtt
gctggcacaactgggttgttatcatgtagaaagaatgcaaatcgattcca
tacctatcctccttgtactaagtcaatctaagtggatcaagggaacttcc
ataaaactagatgacacttgaactttattagagagaagtctggggcaaca
gcttgagaatatggtcaccaggataaattctggaacagtaacatgctca
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggtttgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatacaagggatgtgggtgtgatgg
cacacatatccttttactagaatatgtctaatggttggaaagaaagatat
gttggtaaaatgcttgctgcacaacatgaggacctgactttgaccctgca
gaacacatattagctaacatacagtgagacactgggaggtggagagcact
ataattcaggacaccatgtctcaatacatgcatgcatacatacatacata
catacatacatacatacatacataaggtgaacaaccactggtgaagctaa
cctctgtcttccatatgcatgcatacacatgtatgcccatacacataaac
acacatgtcataaaatcttatctattatcatggaacagacttattattgc
ttgttcagttttgtacaactttctgatcaacattttcatttttgagtaat
caaattgaggaactttacatttttgttaggatacattcattttagtcatt
tccagacccataaaaagctatatgctcattccctaagtcatttttgacct
atcaatctttctgatagatttggggctaggtgctactcaggctatgctca
ccttcaggagcccccttctctcctcggttgctctaaaagtaatggagagg
taaccttaaattgggcactttggtaattttctgatgctcacctttaatta
tgcttatgaaatgttgacatatccagtcctgaatacaatgggacacatta
aaactaaaaaagctgagcccttttgcccattctggtgaaattgggaagaa
gccttattaataagtaacattccaaataagccggtcttaagtaagctaat
tactgttgtaaaaactttccctctcctaccatttctaacctcggaaaaga
aggaacacaccttggcttgacctcagataaccttctaagcccgtttcata
ttcccccaaaactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116111865_116112981
seq2: B6Ng01-175E22.g_67_1232

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATACAAGGGATGTGGGTGTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATACAAGGGATGTGGGTGTGATGG  250

seq1  CACACATATCCTTTTACTAGAATATGTCTAATGGTTGGAAAGAAAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATCCTTTTACTAGAATATGTCTAATGGTTGGAAAGAAAGATAT  300

seq1  GTTGGTAAAATGCTTGCTGCACAACATGAGGACCTGACTTTGACCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAAAATGCTTGCTGCACAACATGAGGACCTGACTTTGACCCTGCA  350

seq1  GAACACATATTAGCTAACATACAGTGAGACACTGGGAGGTGGAGAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATATTAGCTAACATACAGTGAGACACTGGGAGGTGGAGAGCACT  400

seq1  ATAATTCAGGACACCATGTCTCAATACATGCATGCATACATACATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGGACACCATGTCTCAATACATGCATGCATACATACATACATA  450

seq1  CATACATACATACATACATACATAAGGTGAACAACCACTGGTGAAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACATAAGGTGAACAACCACTGGTGAAGCTAA  500

seq1  CCTCTGTCTTCCATATGCATGCATACACATGTATGCCCATACACATAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTTCCATATGCATGCATACACATGTATGCCCATACACATAAAC  550

seq1  ACACATGTCATAAAATCTTATCTATTATCATGGAACAGACTTATTATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTCATAAAATCTTATCTATTATCATGGAACAGACTTATTATTGC  600

seq1  TTGTTCAGTTTTGTACAACTTTCTGATCAACATTTTCATTTTTGAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTTTTGTACAACTTTCTGATCAACATTTTCATTTTTGAGTAAT  650

seq1  CAAATTGAGGAACTTTACATTTTTGTTAGGATACATTCATTTTAGTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAGGAACTTTACATTTTTGTTAGGATACATTCATTTTAGTCATT  700

seq1  TCCAGACCCATAAAAAGCTATATGCTCATTCCCTAAGTCA-TTTTGACCT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCAGACCCATAAAAAGCTATATGCTCATTCCCTAAGTCATTTTTGACCT  750

seq1  ATCAATCTTTCTGATAGA-TTGGGGCTAGGTGCTACTCAGGCTATGCTCA  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCAATCTTTCTGATAGATTTGGGGCTAGGTGCTACTCAGGCTATGCTCA  800

seq1  CCTTCAGGAG-CCCCTTCTCTCCTCGGTTGCTCTAAAAGTAATGGAGAGG  847
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGAGCCCCCTTCTCTCCTCGGTTGCTCTAAAAGTAATGGAGAGG  850

seq1  TAACCTTAAAT--GGCAC-TTGGTAATTTTCTGATGCTCAC--TTTATTA  892
      |||||||||||  ||||| ||||||||||||||||||||||  || ||||
seq2  TAACCTTAAATTGGGCACTTTGGTAATTTTCTGATGCTCACCTTTAATTA  900

seq1  TGC-TATG-AATG-TGACATATCCAGT-CTG-ATACAAT-GGACACAT--  934
      ||| |||| |||| ||||||||||||| ||| ||||||| ||||||||  
seq2  TGCTTATGAAATGTTGACATATCCAGTCCTGAATACAATGGGACACATTA  950

seq1  AAACT-AAAAAGCTGAGCC--TTTGCC--ATCT-GTGAA--TTGGAAGAA  976
      ||||| |||||||||||||  ||||||   ||| |||||  | |||||||
seq2  AAACTAAAAAAGCTGAGCCCTTTTGCCCATTCTGGTGAAATTGGGAAGAA  1000

seq1  GCCTTA-TAATAAGT-ACATTC--AATAGGC--GTCT--AGTAAGCTA--  1016
      |||||| |||||||| ||||||  |||| ||  ||||  |||||||||  
seq2  GCCTTATTAATAAGTAACATTCCAAATAAGCCGGTCTTAAGTAAGCTAAT  1050

seq1  TACTG-TGT-AAAACTT--CCTCT-CTACC-TTTCT-ACCTCCG-AAAGA  1058
      ||||| ||| |||||||  ||||| ||||| ||||| ||||| | |||||
seq2  TACTGTTGTAAAAACTTTCCCTCTCCTACCATTTCTAACCTCGGAAAAGA  1100

seq1  --GGACACACCT--GCTTGACCTCAG-TAAC---CTCAACCCCTTTCACT  1100
        | ||||||||  |||||||||||| ||||   || | ||| ||||| |
seq2  AGGAACACACCTTGGCTTGACCTCAGATAACCTTCTAAGCCCGTTTCA-T  1149

seq1  ATCCCCCCAAAACTTTC  1117
      || ||||||||||||||
seq2  ATTCCCCCAAAACTTTC  1166