BAC Information

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BAC

Clone NameB6Ng01-175H06
Chromosome1 (Build37)
Map Location 112,398,809 - 112,400,016
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429
Downstream geneEG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175H06.bB6Ng01-175H06.g
ACCGA003255GA003256
length1,1871,188
definitionB6Ng01-175H06.b B6Ng01-175H06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgcttagctctgttcaccattttttagtagggttatttggtt
cttgagattctaattccttgtattctttgtatatattggatattagctct
ctattgaatgtaggattggtaaagatattttccaatctgttggttgcctt
tttgtcttactgacagtgtcctttgccttacagaagctttgcaattttat
ggggttctatttgtccattcttgatcttatagcataagccattggtgctc
tgttcaggaatttttcccatgtgactatatgtttgaggctcttccctacc
tactcctctataaatttcagtgtctccggatttatgtggagttccttgat
ccacttggacttgaggcttttacaagggcctacgaatgggtggatttgca
ttcatctacatgctaattgccagttgaggcagcaccatttgctaaaaagg
ctggtccccccccccctcgattggatggttttagcactttgtcaaagata
aagtgaccataggtgtgtagattcatttctgtgtcttcaattctattcca
ttgatctacctgcctgtaactgtaccaatgctgtgcagtttttatcacaa
ctgctctatagtaccatttgaggtcagggatggagagtctcccagaagtt
cttttatcattgagaatagtttagctatcctagttttacttttgttattc
cagatgaatttgcaaattgctctttttaactctgtgaagaagtaagtggg
gattttaatagggattgcattagatctgtataatgtttttggcaatatgg
ccatttttacaatattaatcctgcaaaatccatcaacatgggagatcttt
acatcttctgagatctttcttcagagacttaaagtttcttatcatacaaa
ttttcacttgcttaattaggtccaaccaatgtatttgataattattctga
gtattttgaagaagtgctgttttccctaattttcttcttagcctgtttat
acattgtgtagaggaaggcaacttgactgtgtttgagttaattttattat
ccagctacttggctgaagttggttaatcaaggtttaagggagattcctct
gggcggatttcggttcaccttaaggattactaggaatattgactggccaa
taagagctatttttaatgtccttcggttcaaattata

gaattccactctaaagaaagacaaacatgttacatatgtgcatatatttc
tacaaatatatcccattagtacaggaaataatacattataataaagaatt
ctataaaagaaatattgtgatttgtatattttttcacatttgtataaatc
attggttttgaaaaaaaaacctgtcagcagtattcttgcattaaatcttt
atatttctatatttttccactaactcaagactcctttatgagttaccttc
attcaagcacatgacactttttttaagatggcagtcacatttgaggaaat
gtattagacactaagctttcaaagatcaatgaatgataatactttttcca
acaatgtctaggcaaaaacaaggatgcacatgcacaaataatttcaagtt
acagcttgtgtctcaactgtagaactactagcagcttaatcgaaaaccaa
attttgcaagttgatctcttctatgcactgtagtagcactcttagaatct
gcctttcaaatgctagtattaatgcattcactctcattagttatggcaat
ttttttccatcataaggaaatagctcataatttaaataatctcatttaaa
aatgactgcattgttatatgaaatgcaattataataagataaaaatgaaa
taaataatttaattactgtggtttatatatgttagcatggcatgtggata
taagaaggctaacttcctacaccttattttctatgtaatcctcagaagta
gcaccagggccttgcctaggtacacctaggtacatcacatgaggtgatga
catcactgtggcttacattgacagtcacaaacactggaaaacataggggg
actataggttcatgattccacatagttgtttagggggtatttgggaaaga
acctggaattatgtatgtgctacattaatattcatatgggtctactttct
agaaaaatggtaaaaaagaaagtactgtgaatgagaaattattttatgag
tactgatcagatgagatctgggctcacaaatataaaatggctttagtgag
taagatttccacagagcagatagaagacaagtagagttcagagtatagtg
agaaagaaggacattgacaatgagccaaaaagatctgagtactagtacct
tggttgggtgctgcatgataccatgttccaaagaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112398809_112400016
seq2: B6Ng01-175H06.g_61_1248 (reverse)

seq1  GGTTTCTTTGGAACATGGTATCCATCGCAGCAACACAAACCAAAGTACTA  50
      ||||||||||||||||||||| ||| ||||||   | |||||| ||||| 
seq2  GGTTTCTTTGGAACATGGTAT-CAT-GCAGCA--CCCAACCAAGGTACT-  45

seq1  ATTACTCAAAGGATCTTTTTGCCTCCATTTGTCAATGTCCTTTCTTCTCA  100
      | ||||||   |||||||||| |||   ||||||||||||||  ||||||
seq2  AGTACTCA---GATCTTTTTGGCTC--ATTGTCAATGTCCTTCTTTCTCA  90

seq1  CCTAATTACTCTGAAACTCTAACCTTGTCTTCTATCTGCCTCTGTGAAAT  150
       |||  ||||||| |||||||  ||||||||||||||| ||||||| || 
seq2  -CTA--TACTCTG-AACTCTA--CTTGTCTTCTATCTG-CTCTGTGGAAA  133

seq1  TCTTTACTCACTAAAGCCATTTTATATTTGTGAGCCCAGAATCTCATCTG  200
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TC-TTACTCACTAAAGCCATTTTATATTTGTGAGCCCAG-ATCTCATCTG  181

seq1  ATCAGTTACTCATAAAATAATTTCCTCATTTCCACAGTACTTTCTTTTTT  250
      ||||| ||||||||||||||||| ||||||  ||||||||||||||||||
seq2  ATCAG-TACTCATAAAATAATTT-CTCATT--CACAGTACTTTCTTTTTT  227

seq1  ACCA-TTTTCTAGAAAGTAGA-CCATATGAATATTAATGTAGCACATACA  298
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCATTTTTCTAGAAAGTAGACCCATATGAATATTAATGTAGCACATACA  277

seq1  TAATTCCAGGTTCTTT-CCAAATACCCCCTAAACAACTATGTGGAATCAT  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATTCCAGGTTCTTTCCCAAATACCCCCTAAACAACTATGTGGAATCAT  327

seq1  GAACCTATAGTCCCCCTATGTTTTCCAGTGTTTGTGACTGTCAATGTAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATAGTCCCCCTATGTTTTCCAGTGTTTGTGACTGTCAATGTAAG  377

seq1  CCACAGTGATGTCATCACCTCATGTGATGTACCTAGGTGTACCTAGGCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGATGTCATCACCTCATGTGATGTACCTAGGTGTACCTAGGCAA  427

seq1  GGCCCTGGTGCTACTTCTGAGGATTACATAGAAAATAAGGTGTAGGAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGTGCTACTTCTGAGGATTACATAGAAAATAAGGTGTAGGAAGT  477

seq1  TAGCCTTCTTATATCCACATGCCATGCTAACATATATAAACCACAGTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCTTATATCCACATGCCATGCTAACATATATAAACCACAGTAAT  527

seq1  TAAATTATTTATTTCATTTTTATCTTATTATAATTGCATTTCATATAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTATTTCATTTTTATCTTATTATAATTGCATTTCATATAACA  577

seq1  ATGCAGTCATTTTTAAATGAGATTATTTAAATTATGAGCTATTTCCTTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCATTTTTAAATGAGATTATTTAAATTATGAGCTATTTCCTTAT  627

seq1  GATGGAAAAAAATTGCCATAACTAATGAGAGTGAATGCATTAATACTAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAAAAATTGCCATAACTAATGAGAGTGAATGCATTAATACTAGC  677

seq1  ATTTGAAAGGCAGATTCTAAGAGTGCTACTACAGTGCATAGAAGAGATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGGCAGATTCTAAGAGTGCTACTACAGTGCATAGAAGAGATCA  727

seq1  ACTTGCAAAATTTGGTTTTCGATTAAGCTGCTAGTAGTTCTACAGTTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAAATTTGGTTTTCGATTAAGCTGCTAGTAGTTCTACAGTTGAG  777

seq1  ACACAAGCTGTAACTTGAAATTATTTGTGCATGTGCATCCTTGTTTTTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTGTAACTTGAAATTATTTGTGCATGTGCATCCTTGTTTTTGC  827

seq1  CTAGACATTGTTGGAAAAAGTATTATCATTCATTGATCTTTGAAAGCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATTGTTGGAAAAAGTATTATCATTCATTGATCTTTGAAAGCTTA  877

seq1  GTGTCTAATACATTTCCTCAAATGTGACTGCCATCTTAAAAAAAGTGTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATACATTTCCTCAAATGTGACTGCCATCTTAAAAAAAGTGTCA  927

seq1  TGTGCTTGAATGAAGGTAACTCATAAAGGAGTCTTGAGTTAGTGGAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGAATGAAGGTAACTCATAAAGGAGTCTTGAGTTAGTGGAAAAA  977

seq1  TATAGAAATATAAAGATTTAATGCAAGAATACTGCTGACAGGTTTTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATATAAAGATTTAATGCAAGAATACTGCTGACAGGTTTTTTTT  1027

seq1  TCAAAACCAATGATTTATACAAATGTGAAAAAATATACAAATCACAATAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCAATGATTTATACAAATGTGAAAAAATATACAAATCACAATAT  1077

seq1  TTCTTTTATAGAATTCTTTATTATAATGTATTATTTCCTGTACTAATGGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATAGAATTCTTTATTATAATGTATTATTTCCTGTACTAATGGG  1127

seq1  ATATATTTGTAGAAATATATGCACATATGTAACATGTTTGTCTTTCTTTA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGTAGAAATATATGCACATATGTAACATGTTTGTCTTTCTTTA  1177

seq1  GAGTGGAATTC  1208
      |||||||||||
seq2  GAGTGGAATTC  1188


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