BAC Information

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BAC

Clone NameB6Ng01-175N15
Chromosome1 (Build37)
Map Location 58,368,524 - 58,521,480
singlet/doubletdoublet
Overlap geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l
Upstream gene1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4
Downstream geneBC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N15.bB6Ng01-175N15.g
ACCGA003546GA003547
length380960
definitionB6Ng01-175N15.b B6Ng01-175N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,368,524 - 58,368,903)(58,520,531 - 58,521,480)
sequence
atgtgaacacatcacaacaggggacttgcttggtttgtgttacagtcaac
atctgggacttaccctcactgaatacagtggccagtgggtggaacctata
atctgcactttggtgctggaagtctaatcacgggtctcacacacactaag
gcaagttctggatcactgggtacaacccaagaccttccgttttcgttatt
tttaaatttgtacccaagcacatgtaacttcagtgtggctatttctattc
aacaatgacatccaagacaccaactaccgatgacattgagcttggcttct
gttctatttgctttaaaattacttaaattggttggttcgtttatcactat
tacggtgtggagagtgggaggtgtggaggg
gaattccaggacagccaggactccacagagaaatctgtctcaaaatccaa
aataaaataaaatctgtggggcgatggtggtgcaggcctttaatctcagc
acttcggagacagagtcaagtggatcattgaatttgaggccagcttggac
aagagtttgttctaggacaggcagggccacacagaaaaaccctgtcttga
gaaatactgtcttgaaaaacccaaaataaacaaataaatataaatttaaa
attcagggtttttttgttttgtttaaccttcaacagaaaggtccagatag
cttccttacaaggggttaacagatggaatgttcttttctcttgtagggaa
ctgatggtgtagaatatttattaattcctgttgacagcggaatattggct
gatttcttggagaaggaagaggaggaggcataggctgtctcttatccttg
aactttctgtggaagcctcattgtggcccagctgctgctcctcagtaaga
atgctggtttacatccaacattaggtcattctctccagcatacaagatgt
tctatggaagaggcatagcatcaatttgaactttgattagcctggctggt
gtactgtctctaatactatgcagtggtcgttgagttggataaaagtgcct
tttaatttattacttctctggagacttctttgctggttgtacagtgtgct
cagggattctttggaactggattggttttgggttatttttatactgaatg
ctatccctaatttttgagggcaatttaacactccagagctgaattactac
aagtgcactttgcttcagacggtcagaggacaagagttcagagtagcgtt
tctcacgggactgatgaggaaggagctgtcctgcttctcctgacgatgat
tgctagaagatgttcagtggactgagatggacacagcctttttcctgtgg
acttaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58368524_58368903
seq2: B6Ng01-175N15.b_53_432

seq1  ATGTGAACACATCACAACAGGGGACTTGCTTGGTTTGTGTTACAGTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACACATCACAACAGGGGACTTGCTTGGTTTGTGTTACAGTCAAC  50

seq1  ATCTGGGACTTACCCTCACTGAATACAGTGGCCAGTGGGTGGAACCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGACTTACCCTCACTGAATACAGTGGCCAGTGGGTGGAACCTATA  100

seq1  ATCTGCACTTTGGTGCTGGAAGTCTAATCACGGGTCTCACACACACTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACTTTGGTGCTGGAAGTCTAATCACGGGTCTCACACACACTAAG  150

seq1  GCAAGTTCTGGATCACTGGGTACAACCCAAGACCTTCCGTTTTCGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCTGGATCACTGGGTACAACCCAAGACCTTCCGTTTTCGTTATT  200

seq1  TTTAAATTTGTACCCAAGCACATGTAACTTCAGTGTGGCTATTTCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTGTACCCAAGCACATGTAACTTCAGTGTGGCTATTTCTATTC  250

seq1  AACAATGACATCCAAGACACCAACTACCGATGACATTGAGCTTGGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACATCCAAGACACCAACTACCGATGACATTGAGCTTGGCTTCT  300

seq1  GTTCTATTTGCTTTAAAATTACTTAAATTGGTTGGTTCGTTTATCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTGCTTTAAAATTACTTAAATTGGTTGGTTCGTTTATCACTAT  350

seq1  TACGGTGTGGAGAGTGGGAGGTGTGGAGGG  380
      ||||||||||||||||||||||||||||||
seq2  TACGGTGTGGAGAGTGGGAGGTGTGGAGGG  380

seq1: chr1_58520531_58521480
seq2: B6Ng01-175N15.g_65_1024 (reverse)

seq1  TGGCCTAAGTCCACAAGGAGAAGGCTGTGT-CATCTCAGTCCACTG-ACA  48
      ||||||||||||||| | | |||||||||| ||||||||||||||| |||
seq2  TGGCCTAAGTCCACAGGAAAAAGGCTGTGTCCATCTCAGTCCACTGAACA  50

seq1  TCTTCTA-CCATCATC-TCAGGAGAAGCAGGACACCTCCTTCCTCATCAG  96
      ||||||| | |||||| ||||||||||||||||| |||||||||||||||
seq2  TCTTCTAGCAATCATCGTCAGGAGAAGCAGGACAGCTCCTTCCTCATCAG  100

seq1  TCCCGTGAG-AACGCTACTCTGAACTCTTGTCCTCTGACCGTCTGAAGC-  144
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  TCCCGTGAGAAACGCTACTCTGAACTCTTGTCCTCTGACCGTCTGAAGCA  150

seq1  AAGTGCACTTGTAGTAATTCAGCTCTGGAGTGTTAAATTGCCCTCAAAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACTTGTAGTAATTCAGCTCTGGAGTGTTAAATTGCCCTCAAAAA  200

seq1  TTAGGGATAGCATTCAGTAT-AAAATAACCCAAAACC-ATCCAGTTCCAA  242
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TTAGGGATAGCATTCAGTATAAAAATAACCCAAAACCAATCCAGTTCCAA  250

seq1  AGAATCCCTGAGCACACTGTACAACCAGC-AAGAAGTCTCCAGAGAAGTA  291
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAATCCCTGAGCACACTGTACAACCAGCAAAGAAGTCTCCAGAGAAGTA  300

seq1  ATAAATT-AAAGGCACTTTTATCCAACTCAACGACCACTGCATAGTATTA  340
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAAGGCACTTTTATCCAACTCAACGACCACTGCATAGTATTA  350

seq1  GAGACAGTACACCAGCCAGGCTAATCAAAGTTCAAATTGATGCTATGCCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTACACCAGCCAGGCTAATCAAAGTTCAAATTGATGCTATGCCT  400

seq1  CTTCCATAGAACATCTTGTATGCTGGAGAGAATGACCTAATGTTGGATGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATAGAACATCTTGTATGCTGGAGAGAATGACCTAATGTTGGATGT  450

seq1  AAACCAGCATTCTTACTGAGGAGCAGCAGCTGGGCCACAATGAGGCTTCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCATTCTTACTGAGGAGCAGCAGCTGGGCCACAATGAGGCTTCC  500

seq1  ACAGAAAGTTCAAGGATAAGAGACAGCCTATGCCTCCTCCTCTTCCTTCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTTCAAGGATAAGAGACAGCCTATGCCTCCTCCTCTTCCTTCT  550

seq1  CCAAGAAATCAGCCAATATTCCGCTGTCAACAGGAATTAATAAATATTCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAATCAGCCAATATTCCGCTGTCAACAGGAATTAATAAATATTCT  600

seq1  ACACCATCAGTTCCCTACAAGAGAAAAGAACATTCCATCTGTTAACCCCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCAGTTCCCTACAAGAGAAAAGAACATTCCATCTGTTAACCCCT  650

seq1  TGTAAGGAAGCTATCTGGACCTTTCTGTTGAAGGTTAAACAAAACAAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGAAGCTATCTGGACCTTTCTGTTGAAGGTTAAACAAAACAAAAA  700

seq1  AACCCTGAATTTTAAATTTATATTTATTTGTTTATTTTGGGTTTTTCAAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAATTTTAAATTTATATTTATTTGTTTATTTTGGGTTTTTCAAG  750

seq1  ACAGTATTTCTCAAGACAGGGTTTTTCTGTGTGGCCCTGCCTGTCCTAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTCTCAAGACAGGGTTTTTCTGTGTGGCCCTGCCTGTCCTAGA  800

seq1  ACAAACTCTTGTCCAAGCTGGCCTCAAATTCAATGATCCACTTGACTCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCTTGTCCAAGCTGGCCTCAAATTCAATGATCCACTTGACTCTG  850

seq1  TCTCCGAAGTGCTGAGATTAAAGGCCTGCACCACCATCGCCCCACAGATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAAGTGCTGAGATTAAAGGCCTGCACCACCATCGCCCCACAGATT  900

seq1  TTATTTTATTTTGGATTTTGAGACAGATTTCTCTGTGGAGTCCTGGCTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTGGATTTTGAGACAGATTTCTCTGTGGAGTCCTGGCTGT  950

seq1  CCTGGAATTC  950
      ||||||||||
seq2  CCTGGAATTC  960