BAC Information

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BAC

Clone NameB6Ng01-176A06
Chromosome1 (Build37)
Map Location 36,005,145 - 36,142,016
singlet/doubletdoublet
Overlap geneLOC666283, LOC100041091, EG666290, Hs6st1
Upstream geneLOC666261, LOC100041544
Downstream geneUgcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176A06.bB6Ng01-176A06.g
ACCGA003666GA003667
length1,144959
definitionB6Ng01-176A06.b B6Ng01-176A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,005,145 - 36,006,295)(36,141,461 - 36,142,016)
sequence
gaattcacatttaactgatctaatgtggcacttagaaaaggagcagagac
agggacacagaaatctcaataaaggggaaacatgtgggcattaactccag
gaaagaaacatcatcatgctctacttcactttgcaggaagcataatctac
cgtcctaatgacacaaacactgcctatcgatttaaccaaaagtcgtgata
aaagtctgctgggggtggaggaagagccaagggaaggaagttcatggagg
gctcaatcaccagttctcactgcagtcaataaacaatgcttaaaatccat
taatgaagacatacatggcagcattgtataatagttcaagagatggaagt
aagcagtcacagtgaatactaccaacaagaatctaactgatacaaacatt
tacttttaaacatcaatgcttaagaagggatgaggcgtgatctctaacat
aatacatgtacacaagcacacacacacacacacacacacagagcctgtta
tgccactgacataggaacaaacctggttgcccctgggaagggagactcac
aaccccgagtccttcctcccagtcaatggactgacattctttcagacttg
aaaagggggcccctaaagaacaacacactcccagatgaccatctgatcac
agctacatgatcaggcctagccagggttgtcaggctgtctcgcaatggaa
aggccaagaatcccctggtagttgttcagtccacaagacgggatgtctca
gcagtcccaatctggtgctggaggtccccagaggattccagctggtcttc
aaactacatacattggcatctcaacaaagtagtttctaacaccagcaaag
aaatgcctcagtgacaggataggtgaacttgccagggaaagtgaaaggca
agcagacaacgcaaacgcttccttcccccacgtcctttcttgtaggctgc
caccagaaggcatgggcccagatttaaaggtgcatcttctcactcaaatg
atccaatcaaggaaaatcctttgcaggggtgcaagctgcttggctttagt
gattccaaatgtagtcagtggcaccaggatgagcagaagataagaggagt
ggggggcttacagtacttgtcgagagcccaatcaagtgatattt
gaattctccttttggatgtatagcaccaaagaactgaaagtagaggctca
aggagacgttttcttttcttttcttttcttttctttttcttcttcttctt
tttttttttttttggtttttcgagacagggtttctctgtgtactttggct
gtcctagaactcactttgtagaccaggctggcctcaaactcagaaatccg
cctgcctctgcctcccgagtgctgggattaaaggcatgtgccacaccact
gtctggctcaaggagacgttttcacacacacatggacaacagcatcattc
ccaagaaagaaaaacagctaaataactattgatggacggacataccagca
agatgagcatatatgtatgcacagcgggctactgttcagccttaaaacaa
gggaatttggggcctgggggacagctcagtggatggtgtgtgcttgcctc
acgaacacgaagcctggagttccgatccccagcaaccacataaaagctgg
gcaggcagcagtgtgtctgaaattgtgaggctcaggagacagacacggga
tgcctaggataagctggctgggcggaccagccagatcagcaggcttgggg
ttcactgagaaaccctgcttcaggccatgaagtggatggagggtggttga
gtaagactcctgatgtcttattcagtaagaaatctagttgtcagcctata
gcttacacaagtgtgcatgcacacctgcacattcaaacatgtgagagcat
gcacaaacacatacataggcaacgccagtcaccaaaatacaaacgtcata
cattcccacttatataaggtatccagaggtgggttcctcgtgacagtcaa
attgtggttgctagaagccaggcagaggcctagagagttaaggtttgaag
aagatgaggtttccatttgggaagttgaagacgctgaaatgcacaaaggt
acttaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36005145_36006295
seq2: B6Ng01-176A06.b_45_1188

seq1  GAATTCACATTTAACTGATCTAATGTGGCACTTAGAAAAGGAGCAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTAACTGATCTAATGTGGCACTTAGAAAAGGAGCAGAGAC  50

seq1  AGGGACACAGAAATCTCAATAAAGGGGAAACATGTGGGCATTAACTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACAGAAATCTCAATAAAGGGGAAACATGTGGGCATTAACTCCAG  100

seq1  GAAAGAAACATCATCATGCTCTACTTCACTTTGCAGGAAGCATAATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACATCATCATGCTCTACTTCACTTTGCAGGAAGCATAATCTAC  150

seq1  CGTCCTAATGACACAAACACTGCCTATCGATTTAACCAAAAGTCGTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTAATGACACAAACACTGCCTATCGATTTAACCAAAAGTCGTGATA  200

seq1  AAAGTCTGCTGGGGGTGGAGGAAGAGCCAAGGGAAGGAAGTTCATGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCTGGGGGTGGAGGAAGAGCCAAGGGAAGGAAGTTCATGGAGG  250

seq1  GCTCAATCACCAGTTCTCACTGCAGTCAATAAACAATGCTTAAAATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATCACCAGTTCTCACTGCAGTCAATAAACAATGCTTAAAATCCAT  300

seq1  TAATGAAGACATACATGGCAGCATTGTATAATAGTTCAAGAGATGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGACATACATGGCAGCATTGTATAATAGTTCAAGAGATGGAAGT  350

seq1  AAGCAGTCACAGTGAATACTACCAACAAGAATCTAACTGATACAAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCACAGTGAATACTACCAACAAGAATCTAACTGATACAAACATT  400

seq1  TACTTTTAAACATCAATGCTTAAGAAGGGATGAGGCGTGATCTCTAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAACATCAATGCTTAAGAAGGGATGAGGCGTGATCTCTAACAT  450

seq1  AATACATGTACACAAGCACACACACACACACACACACACAGAGCCTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGTACACAAGCACACACACACACACACACACACAGAGCCTGTTA  500

seq1  TGCCACTGACATAGGAACAAACCTGGTTGCCCCTGGGAAGGGAGACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGACATAGGAACAAACCTGGTTGCCCCTGGGAAGGGAGACTCAC  550

seq1  AACCCCGAGTCCTTCCTCCCAGTCAATGGACTGACATTCTTTCAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGAGTCCTTCCTCCCAGTCAATGGACTGACATTCTTTCAGACTTG  600

seq1  AAAAGGGGGCCCCTAAAGAACAACACACTCCCAGATGACCATCTGATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGGCCCCTAAAGAACAACACACTCCCAGATGACCATCTGATCAC  650

seq1  AGCTACATGATCAGGCCTAGCCAGGGTTGTCAGGCTGTCTCGCAATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATGATCAGGCCTAGCCAGGGTTGTCAGGCTGTCTCGCAATGGAA  700

seq1  AGGCCAAGAATCCCCTGGTAGTTGTTCAGTCCACAAGACGGGATGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGAATCCCCTGGTAGTTGTTCAGTCCACAAGACGGGATGTCTCA  750

seq1  GCAGTCCCAATCTGGTGCTGGAGGTCCCCAGAGGATTCCAGCTGGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCCAATCTGGTGCTGGAGGTCCCCAGAGGATTCCAGCTGGTCTTC  800

seq1  AAACTACATACATTGGCATCTCAACAAAGTAGTTTCTAACACCAGCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACATACATTGGCATCTCAACAAAGTAGTTTCTAACACCAGCAAAG  850

seq1  AAATGCCTCAGTGACAGGATAGGTGAACTTGCCAGGGAAAGTG-AAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATGCCTCAGTGACAGGATAGGTGAACTTGCCAGGGAAAGTGAAAGGCA  900

seq1  AGCAGACAACGCAAACGCTTCCTTCCCCCACGTCCTTTCTTGTAGGCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAACGCAAACGCTTCCTTCCCCCACGTCCTTTCTTGTAGGCTGC  950

seq1  CACCAGAAGGCAT-GGCCCAGATTT-AAGGTGCATCTTCTCACCTCAAAT  997
      ||||||||||||| ||||||||||| |||||||||||||||| |||||||
seq2  CACCAGAAGGCATGGGCCCAGATTTAAAGGTGCATCTTCTCA-CTCAAAT  999

seq1  GATCCAATCAA-GAAAATCCTTTGCAGGTGTGCAAAGCTGCTTGGCTTTT  1046
      ||||||||||| |||||||||||||||| |||| |||||||||||| |||
seq2  GATCCAATCAAGGAAAATCCTTTGCAGGGGTGC-AAGCTGCTTGGC-TTT  1047

seq1  AGTTGATTCCAAATGTAGTCAGGTTGGCAACCAAGATGAGCAGAAGATAA  1096
      || |||||||||||||||||||  |||| |||| ||||||||||||||||
seq2  AG-TGATTCCAAATGTAGTCAG--TGGC-ACCAGGATGAGCAGAAGATAA  1093

seq1  GAGGGAAGTGGGGGCTTTAACAGTAACTGGCCGAGAGCCCATTCATGTGA  1146
      ||||  ||||||||  || ||||| ||| | |||||||||| ||| ||||
seq2  GAGG--AGTGGGGGGCTT-ACAGT-ACTTGTCGAGAGCCCAATCAAGTGA  1139

seq1  TATTT  1151
      |||||
seq2  TATTT  1144

seq1: chr1_36141461_36142016
seq2: B6Ng01-176A06.g_64_619 (reverse)

seq1  TAGGCATCCCGTGTCTGTCTCCTGAGCCTCACAATTTCAGACACACTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCCGTGTCTGTCTCCTGAGCCTCACAATTTCAGACACACTGCT  50

seq1  GCCTGCCCAGCTTTTATGTGGTTGCTGGGGATCGGAACTCCAGGCTTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCAGCTTTTATGTGGTTGCTGGGGATCGGAACTCCAGGCTTCGT  100

seq1  GTTCGTGAGGCAAGCACACACCATCCACTGAGCTGTCCCCCAGGCCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTGAGGCAAGCACACACCATCCACTGAGCTGTCCCCCAGGCCCCAA  150

seq1  ATTCCCTTGTTTTAAGGCTGAACAGTAGCCCGCTGTGCATACATATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTGTTTTAAGGCTGAACAGTAGCCCGCTGTGCATACATATATGC  200

seq1  TCATCTTGCTGGTATGTCCGTCCATCAATAGTTATTTAGCTGTTTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGCTGGTATGTCCGTCCATCAATAGTTATTTAGCTGTTTTTCTT  250

seq1  TCTTGGGAATGATGCTGTTGTCCATGTGTGTGTGAAAACGTCTCCTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAATGATGCTGTTGTCCATGTGTGTGTGAAAACGTCTCCTTGAG  300

seq1  CCAGACAGTGGTGTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGTGGTGTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCAGA  350

seq1  GGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  400

seq1  TAGGACAGCCAAAGTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGCCAAAGTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAA  450

seq1  AAAAAAAAGAAGAAGAAGAAAAAGAAAAGAAAAGAAAAGAAAAGAAAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAGAAGAAGAAAAAGAAAAGAAAAGAAAAGAAAAGAAAACG  500

seq1  TCTCCTTGAGCCTCTACTTTCAGTTCTTTGGTGCTATACATCCAAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGAGCCTCTACTTTCAGTTCTTTGGTGCTATACATCCAAAAGGA  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556