BAC Information

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BAC

Clone NameB6Ng01-176G05
Chromosome9 (Build37)1 (Build37)
Map Location 84,721,631 - 84,722,84959,802,301 - 59,802,427
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTtk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176G05.bB6Ng01-176G05.g
ACCGA003933GA003934
length1,229574
definitionB6Ng01-176G05.b B6Ng01-176G05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,721,631 - 84,722,849)(59,802,301 - 59,802,427)
sequence
gaattctgttttaatgaattattccttgaagattaatataagattaataa
caacaaaatcatcatgggccacaatgttgatgctcttcatttgtaagagt
ccttgtatccatgtttcaatctctcttcaattccatttgaaatgtaaatg
aaagaatatctaataaaaaaagagagagcgggaaagtgctaatactatta
agctcctcctttctgttttcccacaatcagctactcacagttgttacaaa
tgattcagtaaaataaataacaattactctattaattatctaacttacct
cacatgaagtttttattgttaggcttgatatagagttaaattatgctaag
tatttattttagatgttttggctttagccatacagttaaccatttagacc
ttgacactaaagtatgtaggcagcaacatatgtcaacttgagaacaaaat
ctcatccatcagactcataattctgggaatttcactaaaattactaacat
gaatatttgactactgtagttctgtttctagataactgtttctgttatct
gaggtatgtcagcacacgacatggtttcttctgtgtgcctaaaatctcac
ctccagaaaggcttcgggctatactggaataccaaattctcagtgtagtt
gctagctagctaataaagactctgcttaaatttatgtctgtactctcagt
tattagttattagtaatgaacaactaaatcatcagctgaatgttccttta
gagaatgcattttccagctaatattaaataaccaccataaaagaactcag
agtaagaatttagacatgtctgttttcattgtagcagtataaaatgtcaa
agaaacaatgaggatattatagatcaccagaggtaaaatgatcattagtt
gtaatgatttaacaaaaagacaaaatgtgtgggttttttcttttaaattg
tcatttaagttgacattttcgctcaggcctgggtaaacagtacaaattaa
gcatcatgctagttgctcatcaattctcctataactgatctacttcatac
cggatgtcacatcttttctcccgctgactttcctcctgtgggtattttgg
agtacagagatattacagattctccgagcactattttgtgatagcaaaca
ggcccgtttccagtcttacagcattaggggagatggaggctgttataact
catgtgtcctggccagattccatcttcag

gaattctttgccttagagaagatgtggctttgttagaagaattatgtcat
tgtggaggtgggctttgaggtcatatatgctccatgtacacccaatgtgg
tattcagtctccttctgctaccggcagttcaaattgaagaactctcagtt
ccttctccagcaccacatctgtctggacactgccatgctttccaccacga
tgatattgaactaagtctctgaaactgtaagccagatccaattaaatgtt
tttctttgtaagagttgccttttttcatggtgtccttcacagcatgaaaa
tcctaagtatgtatgcatatatatatatatatatatatatatatatatat
atatatatatatatatatatgcatacatacatacatgtatatgattatga
gagggaggaccatgtcatgtttctatctgtatatgcctataccctctttt
ttgttgttttttgtttggagagtttgagagacagggtttctctgtatagc
ccatgtgtgtccataaatgcactctgtggaccaggttggctagcctgtat
gtcagaaatctgtctgcctctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84721631_84722849
seq2: B6Ng01-176G05.b_44_1272

seq1  GAATTCTGTTTTAATGAATTATTCCTTGAAGATTAATATAAGATTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTAATGAATTATTCCTTGAAGATTAATATAAGATTAATAA  50

seq1  CAACAAAATCATCATGGGCCACAATGTTGATGCTCTTCATTTGTAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATCATCATGGGCCACAATGTTGATGCTCTTCATTTGTAAGAGT  100

seq1  CCTTGTATCCATGTTTCAATCTCTCTTCAATTCCATTTGAAATGTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATCCATGTTTCAATCTCTCTTCAATTCCATTTGAAATGTAAATG  150

seq1  AAAGAATATCTAATAAAAAAAGAGAGAGCGGGAAAGTGCTAATACTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATCTAATAAAAAAAGAGAGAGCGGGAAAGTGCTAATACTATTA  200

seq1  AGCTCCTCCTTTCTGTTTTCCCACAATCAGCTACTCACAGTTGTTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCTTTCTGTTTTCCCACAATCAGCTACTCACAGTTGTTACAAA  250

seq1  TGATTCAGTAAAATAAATAACAATTACTCTATTAATTATCTAACTTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGTAAAATAAATAACAATTACTCTATTAATTATCTAACTTACCT  300

seq1  CACATGAAGTTTTTATTGTTAGGCTTGATATAGAGTTAAATTATGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGTTTTTATTGTTAGGCTTGATATAGAGTTAAATTATGCTAAG  350

seq1  TATTTATTTTAGATGTTTTGGCTTTAGCCATACAGTTAACCATTTAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTAGATGTTTTGGCTTTAGCCATACAGTTAACCATTTAGACC  400

seq1  TTGACACTAAAGTATGTAGGCAGCAACATATGTCAACTTGAGAACAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTAAAGTATGTAGGCAGCAACATATGTCAACTTGAGAACAAAAT  450

seq1  CTCATCCATCAGACTCATAATTCTGGGAATTTCACTAAAATTACTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCATCAGACTCATAATTCTGGGAATTTCACTAAAATTACTAACAT  500

seq1  GAATATTTGACTACTGTAGTTCTGTTTCTAGATAACTGTTTCTGTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGACTACTGTAGTTCTGTTTCTAGATAACTGTTTCTGTTATCT  550

seq1  GAGGTATGTCAGCACACGACATGGTTTCTTCTGTGTGCCTAAAATCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGTCAGCACACGACATGGTTTCTTCTGTGTGCCTAAAATCTCAC  600

seq1  CTCCAGAAAGGCTTCGGGCTATACTGGAATACCAAATTCTCAGTGTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAAGGCTTCGGGCTATACTGGAATACCAAATTCTCAGTGTAGTT  650

seq1  GCTAGCTAGCTAATAAAGACTCTGCTTAAATTTATGTCTGTACTCTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTAGCTAATAAAGACTCTGCTTAAATTTATGTCTGTACTCTCAGT  700

seq1  TATTAGTTATTAGTAATGAACAACTAAATCATCAGCTGAATGTTCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTATTAGTAATGAACAACTAAATCATCAGCTGAATGTTCCTTTA  750

seq1  GAGAATGCATTTTCCAGCTAATATTAAATAACCACCATAAAAGAACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCATTTTCCAGCTAATATTAAATAACCACCATAAAAGAACTCAG  800

seq1  AGTAAGAATTTAGACATGTCTGTTTTCATTGTAGCAGTATAAAATGTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATTTAGACATGTCTGTTTTCATTGTAGCAGTATAAAATGTCAA  850

seq1  AGAAACAATGAGGATATTATAGATCACCAGAGGTAAAATGATCATTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATGAGGATATTATAGATCACCAGAGGTAAAATGATCATTAGTT  900

seq1  GTAATGATTTAACAAAAAGACAAAAATGTGTGGGTTTTTTCTTTTAAATT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAATGATTTAACAAAAAGAC-AAAATGTGTGGGTTTTTTCTTTTAAATT  949

seq1  GTCATTTAAGTTGACATTTTCGCTCAGGGCCTGGGTAAACAGTACAAATT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCATTTAAGTTGACATTTTCGCTCA-GGCCTGGGTAAACAGTACAAATT  998

seq1  AAGCATCATGCTAGTTGCTCATCAATTCT-CTAT-ACTGATCTACTTCAT  1048
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  AAGCATCATGCTAGTTGCTCATCAATTCTCCTATAACTGATCTACTTCAT  1048

seq1  ACC-GATGTCACATCTT---TCTCGCTGAC-TTCCTCCTGT-GGTATTTT  1092
      ||| |||||||||||||   || ||||||| |||||||||| ||||||||
seq2  ACCGGATGTCACATCTTTTCTCCCGCTGACTTTCCTCCTGTGGGTATTTT  1098

seq1  -GAGTACAGAAGATAACAAAGA-TCTCGG-----TCATTTGTGGTCAGCA  1135
       |||||||| |||||  | ||| |||| |     |  |||||| | ||||
seq2  GGAGTACAG-AGATATTACAGATTCTCCGAGCACTATTTTGTGAT-AGCA  1146

seq1  GACAGCCCCGTTCCCAGCTCTTACAGCATCAGGG--GATTGAGGCTGGTT  1183
       |||| |||||| |||| ||||||||||| ||||  ||| |||||| |||
seq2  AACAGGCCCGTTTCCAG-TCTTACAGCATTAGGGGAGATGGAGGCT-GTT  1194

seq1  ATTAATTCAGGTGGCCTGGCTAGATTCCATCTTCAG  1219
      | ||| ||| ||| |||||| |||||||||||||||
seq2  A-TAACTCATGTGTCCTGGCCAGATTCCATCTTCAG  1229


seq1: chr1_59802301_59802427
seq2: B6Ng01-176G05.g_513_640

seq1  TTTTTTGTTGTTTTTTGTTT-TTGTTTTTGTTTTTCGAGACAGGGTTTCT  49
      ||||||||||||||||||||   |  ||||      ||||||||||||||
seq2  TTTTTTGTTGTTTTTTGTTTGGAGAGTTTG-----AGAGACAGGGTTTCT  45

seq1  CTGTATAGCCC-TAGCTGTCCTGGAGCTCACTTTGTAGGCCAGGTTG---  95
      ||||||||||| |   |||||   |   |||| ||| | ||||||||   
seq2  CTGTATAGCCCATGTGTGTCCATAAATGCACTCTGTGGACCAGGTTGGCT  95

seq1  -GCCTTGAACTCAGAAATCTGCCTGCCTCTGCC  127
       ||||  |  ||||||||||| |||||||||||
seq2  AGCCTGTATGTCAGAAATCTGTCTGCCTCTGCC  128


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