BAC Information

Click to search

BAC

Clone NameB6Ng01-176P08
Chromosome1 (Build37)
Map Location 188,479,787 - 188,620,811
singlet/doubletdoublet
Overlap geneTgfb2, Rrp15
Upstream geneLOC677785, Lyplal1
Downstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P08.bB6Ng01-176P08.g
ACCGA004357GA004358
length2091,106
definitionB6Ng01-176P08.b B6Ng01-176P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,620,604 - 188,620,811)(188,479,787 - 188,480,898)
sequence
gagaacagaattatcccccacccccacctccagagaagctgagaacctta
cagtcctcatgaccctgataagattgggagggatcaagggggcagaccat
ggaggatatcatactttgcctttgttttgcttattttggttaggcgcgta
tgtgtgaacatttggtcaccacttggtagaactgtgtgggagggatgagg
aggtgtggg

gaattctaggacagccaggactaccctgtctgggaaaaaaagacaaacaa
acaaataaaacaaagaaacaaagttgaagaaaggtcttacatatgtgttc
tgacaaagaacgaagaaacagaatctgtaagacatgtgctaggatgtcca
gagctctgctcttagcgctctagggtttattcctccactcagttggttac
atcacaaaattgacaagaaaaagacaggtggcctgttgaattcttgggtc
aaaaatctacagatatttgctgtatttgctaaatactggttctcaaagtg
ctgttctgggtccacagccttgtgaacttggaaacctgagataaaatacc
caccactggagaggggcacattatgcaccagctctgagatatcctccctt
cccccatgattcaacctgctggctcaacctactggctcaacctgctggca
cactgactgatccctggctggtcaagccagtgctgttacacaagatcact
ggagatcaggagaaactcttggtgcccaacagcagcagtcatctaagtag
aacccaccagtgttctttgtccttggggaatttccatgatgagcaagaaa
ggtcagcaggtcaaactgaaacatagacggtgtgggtttgcaagggcttg
gtagtagtctggggaggttttgtgtgttctgctccctgagggcatcataa
cctacctgcactttaaatccagctagactcctcccccaaagctgtaagag
gcttccaagccaatggagggcccttctggaaagagtggagctcagactcc
tgaggctggggaaattagaacacacaggaaagggaacacccctcccctgg
gatctacttttttttcctcttggttgggaattgaaagacttctgcacaat
gagaaaatttgaacttgcctgcaaaggcatctcttaaaagatgtaaaaac
catctcttctttaggctagatgtttgtagcctctagcttaactgtcaaac
attcccctcccattaaacttaccatacaactcattaaactaggttacagt
caatcttgcaaagaaattcttgagataaagataatacataagcaagctca
tatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188620604_188620811
seq2: B6Ng01-176P08.b_42_249 (reverse)

seq1  CCCACACCTCCTCATCCCTCCCACACAGTTCTACCAAGTGGTGACCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTCCTCATCCCTCCCACACAGTTCTACCAAGTGGTGACCAAAT  50

seq1  GTTCACACATACGCGCCTAACCAAAATAAGCAAAACAAAGGCAAAGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACATACGCGCCTAACCAAAATAAGCAAAACAAAGGCAAAGTATG  100

seq1  ATATCCTCCATGGTCTGCCCCCTTGATCCCTCCCAATCTTATCAGGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCCATGGTCTGCCCCCTTGATCCCTCCCAATCTTATCAGGGTCA  150

seq1  TGAGGACTGTAAGGTTCTCAGCTTCTCTGGAGGTGGGGGTGGGGGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGTAAGGTTCTCAGCTTCTCTGGAGGTGGGGGTGGGGGATAAT  200

seq1  TCTGTTCT  208
      ||||||||
seq2  TCTGTTCT  208


seq1: chr1_188479787_188480898
seq2: B6Ng01-176P08.g_67_1172

seq1  GAATTCTAGGACAGCCAGGACTACCCTGTCTGGGAAAAAAAGACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACAGCCAGGACTACCCTGTCTGGGAAAAAAAGACAAACAA  50

seq1  ACAAATAAAACAAAGAAACAAAGTTGAAGAAAGGTCTTACATATGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAACAAAGAAACAAAGTTGAAGAAAGGTCTTACATATGTGTTC  100

seq1  TGACAAAGAACGAAGAAACAGAATCTGTAAGACATGTGCTAGGATGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGAACGAAGAAACAGAATCTGTAAGACATGTGCTAGGATGTCCA  150

seq1  GAGCTCTGCTCTTAGCGCTCTAGGGTTTATTCCTCCACTCAGTTGGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGCTCTTAGCGCTCTAGGGTTTATTCCTCCACTCAGTTGGTTAC  200

seq1  ATCACAAAATTGACAAGAAAAAGACAGGTGGCCTGTTGAATTCTTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAATTGACAAGAAAAAGACAGGTGGCCTGTTGAATTCTTGGGTC  250

seq1  AAAAATCTACAGATATTTGCTGTATTTGCTAAATACTGGTTCTCAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTACAGATATTTGCTGTATTTGCTAAATACTGGTTCTCAAAGTG  300

seq1  CTGTTCTGGGTCCACAGCCTTGTGAACTTGGAAACCTGAGATAAAATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGGGTCCACAGCCTTGTGAACTTGGAAACCTGAGATAAAATACC  350

seq1  CACCACTGGAGAGGGGCACATTATGCACCAGCTCTGAGATATCCTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGGAGAGGGGCACATTATGCACCAGCTCTGAGATATCCTCCCTT  400

seq1  CCCCCATGATTCAACCTGCTGGCTCAACCTACTGGCTCAACCTGCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGATTCAACCTGCTGGCTCAACCTACTGGCTCAACCTGCTGGCA  450

seq1  CACTGACTGATCCCTGGCTGGTCAAGCCAGTGCTGTTACACAAGATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGATCCCTGGCTGGTCAAGCCAGTGCTGTTACACAAGATCACT  500

seq1  GGAGATCAGGAGAAACTCTTGGTGCCCAACAGCAGCAGTCATCTAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCAGGAGAAACTCTTGGTGCCCAACAGCAGCAGTCATCTAAGTAG  550

seq1  AACCCACCAGTGTTCTTTGTCCTTGGGGAATTTCCATGATGAGCAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCAGTGTTCTTTGTCCTTGGGGAATTTCCATGATGAGCAAGAAA  600

seq1  GGTCAGCAGGTCAAACTGAAACATAGACGGTGTGGGTTTGCAAGGGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCAGGTCAAACTGAAACATAGACGGTGTGGGTTTGCAAGGGCTTG  650

seq1  GTAGTAGTCTGGGGAGGTTTTGTGTGTTCTGCTCCCTGAGGGCATCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTCTGGGGAGGTTTTGTGTGTTCTGCTCCCTGAGGGCATCATAA  700

seq1  CCTACCTGCACTTTAAATCCAGCTAGACTCCTCCCCCAAAGCTGTAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGCACTTTAAATCCAGCTAGACTCCTCCCCCAAAGCTGTAAGAG  750

seq1  GCTTCCAAGCCAATGGAGGGCCCTTCTGGAAAGAGTGGAGCTCAGACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAGCCAATGGAGGGCCCTTCTGGAAAGAGTGGAGCTCAGACTCC  800

seq1  TGAGGCTGGGGAAATTAGGAACACACAGG-AAGGGAACACCCCTCCCCTG  849
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TGAGGCTGGGGAAATTA-GAACACACAGGAAAGGGAACACCCCTCCCCTG  849

seq1  GGATCTACTTTTTTTTCCTCTTGGTTGGGAATTGAAAGACTTCTGCACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACTTTTTTTTCCTCTTGGTTGGGAATTGAAAGACTTCTGCACAA  899

seq1  TGAGAAAA-TTGAACTTGCCTGCAAAGGCATCTCTTAAAAAGATGTTAAA  948
      |||||||| ||||||||||||||||||||||||||| |||||||| ||||
seq2  TGAGAAAATTTGAACTTGCCTGCAAAGGCATCTCTT-AAAAGATG-TAAA  947

seq1  AACAATCTCTTCTTTAGGCTAGAATGTTTGTAGCCTCTAGCTTAACTGTC  998
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACCATCTCTTCTTTAGGCTAG-ATGTTTGTAGCCTCTAGCTTAACTGTC  996

seq1  AAACATTCCCCTCCCATTAAACCTAACCATACACCTCATAAAACTAGTTT  1048
      ||||||||||||||||||||| || |||||||| ||||| ||||||| ||
seq2  AAACATTCCCCTCCCATTAAA-CTTACCATACAACTCATTAAACTAGGTT  1045

seq1  ACAGTTCCATCTGCCAAAGAAAATTCTTTGAGAT-AAGATAAATACATAA  1097
      |||| || ||||  ||||| |||||| ||||||| ||||| |||||||||
seq2  ACAG-TCAATCTTGCAAAG-AAATTC-TTGAGATAAAGAT-AATACATAA  1091

seq1  ACCAGCTCATATATT  1112
       | ||||||||||||
seq2  GCAAGCTCATATATT  1106


| Home | SequenceCutter | Blast | Download |