BAC Information

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BAC

Clone NameB6Ng01-177G03
Chromosome1 (Build37)
Map Location 135,158,260 - 135,297,811
singlet/doubletdoublet
Overlap genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Upstream geneEG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177G03.bB6Ng01-177G03.g
ACCGA004668GA004669
length1,035162
definitionB6Ng01-177G03.b B6Ng01-177G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,296,777 - 135,297,811)(135,158,260 - 135,158,421)
sequence
gaattcttcccttcctgggagacaagaatggcccagtcaaattcttggtt
ctgttggaatgacgcacacctgaagatacataccgtcagctcttcagaga
agatctcttggggacggatgcatcacagtatcagccccagcagcacctct
ctcttgggtctaactttgtattgattgacaatgctttggcgcctttctgt
tgctggaagaccatgtggcggttgggggaaccacctcaagtactgactct
tccaggccactgctctccactctatgggacttgtatccctcagaaagccc
agtgctgagttgggttctgagctagaggcacttgctgggtggccaccacc
tttctcaggctctgggcaggggctagagtttcactgagcctccatctgcc
gatgtggatagataccacttggccagccagtgggatccatcagtcctggg
gctggagtattgtctgttcatagccagctgagagacttaaaacagccaca
gctggacctcatccaccataggtctgctgcaaggggcacggggaccatca
ggaaagggttgccctcagcctgcagcctgcccagctcccagccctgagta
aacacagagataggatcgggtggagtcaggaagggtggcagggtgcggcc
tgtgggaagaatggcaggatgtggcacggggcaccattctgggcacccac
gccttgggaccattgttcagggcagcccgaggctctcaactctctggggt
ttcagaggaagtgacattccctttgggaccagggcctgccccacccatgt
tacatggatctctttccctgacgatgcccttggcaccagccactcttgac
aagcaggggcggggagggcagccatggaggtttgctgtgcccaagtggcc
ctctctctgagggtctgcctgcctgttgcatatgtcttcctgtgccctgg
gtctgagtcacagtcagtcgacgataacttgaacttctctctgcatcttg
gtgcggagggtacggaactgtgcatctggagggaa
attgaagccccagggacttctctgtcccttcctaatgctgagattacagg
ctcaccttgcagcacctacctttgtaaaaaacatttatttttgttaattc
tctctctctctctctctctttctgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135296777_135297811
seq2: B6Ng01-177G03.b_45_1078 (reverse)

seq1  TCCCTCCAGATGCACAGTTCCCGTTCCCTCCGCA-CAAGATGCAGAGAGA  49
      ||||||||||||||||||| |||| ||||||||| |||||||||||||||
seq2  TCCCTCCAGATGCACAGTT-CCGTACCCTCCGCACCAAGATGCAGAGAGA  49

seq1  GGTTCAAGTTATCGTCGACTGACTGTGACTCAGACCCAGGGCACAGGAAG  99
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTTATCGTCGACTGACTGTGACTCAGACCCAGGGCACAGGAAG  99

seq1  ACATATGCAACAGGCAGGCAGACCCTCAGAGAGAGGGCCACTTGGGCACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAACAGGCAGGCAGACCCTCAGAGAGAGGGCCACTTGGGCACA  149

seq1  GCAAACCTCCATGGCTGCCCTCCCCGCCCCCTGCTTGTCAAGAGTGGCTG  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAAACCTCCATGGCTGCCCTCCCCG-CCCCTGCTTGTCAAGAGTGGCTG  198

seq1  GTGCCAAGGGCATCGTCAGGGAAAGAGATCCATGTAACATGGGTGGGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGGGCATCGTCAGGGAAAGAGATCCATGTAACATGGGTGGGGCA  248

seq1  GGCCCTGGTCCCAAAGGGAATGTCACTTCCTCTGAAACCCCAGAGAGTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGTCCCAAAGGGAATGTCACTTCCTCTGAAACCCCAGAGAGTTG  298

seq1  AGAGCCTCGGGCTGCCCTGAACAATGGTCCCAAGGCGTGGGTGCCCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCGGGCTGCCCTGAACAATGGTCCCAAGGCGTGGGTGCCCAGAA  348

seq1  TGGTGCCCCGTGCCACATCCTGCCATTCTTCCCACAGGCCGCACCCTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCCGTGCCACATCCTGCCATTCTTCCCACAGGCCGCACCCTGCC  398

seq1  ACCCTTCCTGACTCCACCCGATCCTATCTCTGTGTTTACTCAGGGCTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCTGACTCCACCCGATCCTATCTCTGTGTTTACTCAGGGCTGGG  448

seq1  AGCTGGGCAGGCTGCAGGCTGAGGGCAACCCTTTCCTGATGGTCCCCGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCAGGCTGCAGGCTGAGGGCAACCCTTTCCTGATGGTCCCCGTG  498

seq1  CCCCTTGCAGCAGACCTATGGTGGATGAGGTCCAGCTGTGGCTGTTTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCAGCAGACCTATGGTGGATGAGGTCCAGCTGTGGCTGTTTTAA  548

seq1  GTCTCTCAGCTGGCTATGAACAGACAATACTCCAGCCCCAGGACTGATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCAGCTGGCTATGAACAGACAATACTCCAGCCCCAGGACTGATGG  598

seq1  ATCCCACTGGCTGGCCAAGTGGTATCTATCCACATCGGCAGATGGAGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACTGGCTGGCCAAGTGGTATCTATCCACATCGGCAGATGGAGGCT  648

seq1  CAGTGAAACTCTAGCCCCTGCCCAGAGCCTGAGAAAGGTGGTGGCCACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACTCTAGCCCCTGCCCAGAGCCTGAGAAAGGTGGTGGCCACCC  698

seq1  AGCAAGTGCCTCTAGCTCAGAACCCAACTCAGCACTGGGCTTTCTGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGCCTCTAGCTCAGAACCCAACTCAGCACTGGGCTTTCTGAGGG  748

seq1  ATACAAGTCCCATAGAGTGGAGAGCAGTGGCCTGGAAGAGTCAGTACTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTCCCATAGAGTGGAGAGCAGTGGCCTGGAAGAGTCAGTACTTG  798

seq1  AGGTGGTTCCCCCAACCGCCACATGGTCTTCCAGCAACAGAAAGGCGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTCCCCCAACCGCCACATGGTCTTCCAGCAACAGAAAGGCGCCA  848

seq1  AAGCATTGTCAATCAATACAAAGTTAGACCCAAGAGAGAGGTGCTGCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTCAATCAATACAAAGTTAGACCCAAGAGAGAGGTGCTGCTGG  898

seq1  GGCTGATACTGTGATGCATCCGTCCCCAAGAGATCTTCTCTGAAGAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATACTGTGATGCATCCGTCCCCAAGAGATCTTCTCTGAAGAGCTG  948

seq1  ACGGTATGTATCTTCAGGTGTGCGTCATTCCAACAGAACCAAGAATTTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATGTATCTTCAGGTGTGCGTCATTCCAACAGAACCAAGAATTTGA  998

seq1  CTGGGCCATTCTTGTCTCCCAGGAAGGGAAGAATTC  1035
      ||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCATTCTTGTCTCCCAGGAAGGGAAGAATTC  1034

seq1: chr1_135158260_135158421
seq2: B6Ng01-177G03.g_70_231

seq1  ATTGAAGCCCCAGGGACTTCTCTGTCCCTTCCTAATGCTGAGATTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCCCCAGGGACTTCTCTGTCCCTTCCTAATGCTGAGATTACAGG  50

seq1  CTCACCTTGCAGCACCTACCTTTGTAAAAAACATTTATTTTTGTTAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTGCAGCACCTACCTTTGTAAAAAACATTTATTTTTGTTAATTC  100

seq1  TCTCTCTCTCTCTCTCTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGTGTG  162
      ||||||||||||
seq2  TGTGTGTGTGTG  162