BAC Information

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BAC

Clone NameB6Ng01-178D03
Chromosome6 (Build37)1 (Build37)
Map Location 73,674,814 - 73,675,926110,564,951 - 110,565,461
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178D03.bB6Ng01-178D03.g
ACCGA005255GA005256
length1,113426
definitionB6Ng01-178D03.b B6Ng01-178D03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,674,814 - 73,675,926)(110,564,951 - 110,565,461)
sequence
gaattccagaagttctaagaacctttagtgaattaaaaaaaaatgtttta
ggttcccaaaccacctttgttataatgttttggcatctatgttctactca
ttgacattttggctcataaactggagacacatataaattattaatttcag
gtgaaaaacagatcagaaaaaaatttcaggctgtagctatggcaaaggct
tggtaaagtacgtgcaacacaagcgcaaacacctgagtgcaacccctaga
acccgtggaaaacatcagggtatgaccacgtgcacctgaattccagtgct
ggggaaacaaagtcagggggttcactgcgactcactggctagccaacgca
tgtgaattgtgatagaatcatcttaagagaaacaaaggtgtatagcaatt
caggaagtcacatcaaactctgccatgcatgcatgcatacacacatacac
acaaactcagagactgcacagaaacatctccatacacataaacaaataca
cacaaaaaagttcaagtgcacccagctgtactatgtacttaaacatggtg
ttccatgctaatactagtagaagtaatgttagtttgtttagagttcttat
tcatggtcaacacttatattaattattttatttatttacatttcaaacat
tgtcccagttcctggtctcccctctgcaaacctcctttcccttccccctg
ccccctcctcctaaccttttcctctaagagggttctcccccacatgccca
cccatacactcctgcctcaaccctctagcatccaccttcacttgggcaac
aggccttcacaggaccaagcacctctcctcccattgatgccaagtaaggc
aatcctctgctatgtatgtagctggagccatggcccatgtatactttttg
gttggtagttaagtccctggagctctaagtgggcctgttggttgatattg
ttgttcttcctatggggtttcaatcccctttcagttctttcagtcttccc
ttaactcttccattttggggtccccaggatcagtctatggtggctgtgag
tgccttgtatcttgtattagtcagatgctggcagagcctctcagagacag
ctatacctctatg

tgcaggcagaataaaagagaggggaaggataataggagccaaaggggtca
aggacatgagaatatggcccacagaatcaactaagcagggctcatagggg
ctcacagagacggatttgacagtaatggaggctgcatgggtttgagctag
gtcctctgcatatatgtcatggttttatagctcagtgttcttgtgggact
cctaacagtggcggtgggggttgtctctgcctcttgcctgttcttgggac
ctttttttctttctactctgttgcctgttccagccttgatatgagggtat
gtgcctagtcttactgtaactcattttagcgagtttggttgataatctta
ggaggcctgctcttttctgaaggaggaatagatctgaaggacaggagatg
tgtgtgtgtgtgtgtgtgtgtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_73674814_73675926
seq2: B6Ng01-178D03.b_41_1153 (reverse)

seq1  CATAGAGGTATAGCTGTCCTCTGAGAGGCTCTGCCAGCATCTGACTAATA  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATAGAGGTATAGCTGT-CTCTGAGAGGCTCTGCCAGCATCTGACTAATA  49

seq1  C-AGATAC-AGGCACTCACAGCCAACCATTAGACTGATCCTGGGGA-CCC  97
      | |||||| |||||||||||||| |||| ||||||||||||||||| |||
seq2  CAAGATACAAGGCACTCACAGCC-ACCA-TAGACTGATCCTGGGGACCCC  97

seq1  AAAATGGAAGAGTTAAGGGAAGGACTGAAGGAACTG-AAGGGGATTGAAA  146
      ||||||||||||||||||||| ||||||| |||||| |||||||||||||
seq2  AAAATGGAAGAGTTAAGGGAA-GACTGAAAGAACTGAAAGGGGATTGAAA  146

seq1  CCCCATAGGAAGAACAACAATATCAACCAACAGGCCCACTTAGAGCTCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGGAAGAACAACAATATCAACCAACAGGCCCACTTAGAGCTCCA  196

seq1  GGGACTTAACTACCAACCAAAAAGTATACATGGGCCATGGCTCCAGCTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTAACTACCAACCAAAAAGTATACATGGGCCATGGCTCCAGCTAC  246

seq1  ATACATAGCAGAGGATTGCCTTACTTGGCATCAATGGGAGGAGAGGTGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGCAGAGGATTGCCTTACTTGGCATCAATGGGAGGAGAGGTGCT  296

seq1  TGGTCCTGTGAAGGCCTGTTGCCCAAGTGAAGGTGGATGCTAGAGGGTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGTGAAGGCCTGTTGCCCAAGTGAAGGTGGATGCTAGAGGGTTG  346

seq1  AGGCAGGAGTGTATGGGTGGGCATGTGGGGGAGAACCCTCTTAGAGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGTGTATGGGTGGGCATGTGGGGGAGAACCCTCTTAGAGGAAA  396

seq1  AGGTTAGGAGGAGGGGGCAGGGGGAAGGGAAAGGAGGTTTGCAGAGGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGAGGAGGGGGCAGGGGGAAGGGAAAGGAGGTTTGCAGAGGGGA  446

seq1  GACCAGGAACTGGGACAATGTTTGAAATGTAAATAAATAAAATAATTAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAACTGGGACAATGTTTGAAATGTAAATAAATAAAATAATTAAT  496

seq1  ATAAGTGTTGACCATGAATAAGAACTCTAAACAAACTAACATTACTTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTTGACCATGAATAAGAACTCTAAACAAACTAACATTACTTCTA  546

seq1  CTAGTATTAGCATGGAACACCATGTTTAAGTACATAGTACAGCTGGGTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTAGCATGGAACACCATGTTTAAGTACATAGTACAGCTGGGTGC  596

seq1  ACTTGAACTTTTTTGTGTGTATTTGTTTATGTGTATGGAGATGTTTCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTTTTTTGTGTGTATTTGTTTATGTGTATGGAGATGTTTCTGT  646

seq1  GCAGTCTCTGAGTTTGTGTGTATGTGTGTATGCATGCATGCATGGCAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTGAGTTTGTGTGTATGTGTGTATGCATGCATGCATGGCAGAG  696

seq1  TTTGATGTGACTTCCTGAATTGCTATACACCTTTGTTTCTCTTAAGATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGACTTCCTGAATTGCTATACACCTTTGTTTCTCTTAAGATGA  746

seq1  TTCTATCACAATTCACATGCGTTGGCTAGCCAGTGAGTCGCAGTGAACCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACAATTCACATGCGTTGGCTAGCCAGTGAGTCGCAGTGAACCC  796

seq1  CCTGACTTTGTTTCCCCAGCACTGGAATTCAGGTGCACGTGGTCATACCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTGTTTCCCCAGCACTGGAATTCAGGTGCACGTGGTCATACCC  846

seq1  TGATGTTTTCCACGGGTTCTAGGGGTTGCACTCAGGTGTTTGCGCTTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTCCACGGGTTCTAGGGGTTGCACTCAGGTGTTTGCGCTTGTG  896

seq1  TTGCACGTACTTTACCAAGCCTTTGCCATAGCTACAGCCTGAAATTTTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGTACTTTACCAAGCCTTTGCCATAGCTACAGCCTGAAATTTTTT  946

seq1  TCTGATCTGTTTTTCACCTGAAATTAATAATTTATATGTGTCTCCAGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTGTTTTTCACCTGAAATTAATAATTTATATGTGTCTCCAGTTT  996

seq1  ATGAGCCAAAATGTCAATGAGTAGAACATAGATGCCAAAACATTATAACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCAAAATGTCAATGAGTAGAACATAGATGCCAAAACATTATAACA  1046

seq1  AAGGTGGTTTGGGAACCTAAAACATTTTTTTTTAATTCACTAAAGGTTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTTTGGGAACCTAAAACATTTTTTTTTAATTCACTAAAGGTTCT  1096

seq1  TAGAACTTCTGGAATTC  1113
      |||||||||||||||||
seq2  TAGAACTTCTGGAATTC  1113


seq1: chr1_110564951_110565461
seq2: B6Ng01-178D03.g_144_495 (reverse)

seq1  CCCCCACACACACACAC-CACACACACCTCCCTTGTCCCCCAAATCTTCT  49
      ||||||||||||||||| ||||||||| || | |||||  || |   |||
seq2  CCCCCACACACACACACACACACACACATCTCCTGTCCTTCAGA---TCT  47

seq1  AACCCTGTCTGCTGTTTTCTTTCAGAAAAGCACAAGCTTTC-AAAAGACA  98
      |  ||            || ||||||||||  || || | | || |    
seq2  ATTCC------------TCCTTCAGAAAAGAGCAGGCCTCCTAAGATTAT  85

seq1  GAAACAAACACAATAAAGCAAGATACTTTAAGGTGAGACA-AAACCCTCC  147
       || ||||| |  ||||   || |||  ||||   || || | |||||| 
seq2  CAACCAAACTCGCTAAAATGAGTTACAGTAAGACTAGGCACATACCCTCA  135

seq1  CATCCAGACTGGACAATGTAACTCAATAGGAGGAAAAAAACAGACATAAG  197
       ||| || |||||  | | |||  | ||| | ||||||||          
seq2  TATCAAGGCTGGAACAGGCAACAGAGTAGAAAGAAAAAAA----------  175

seq1  TCTGCTCCGTATTAGAAGTTATACACTAACCTATATGAATAGCTGAATGT  247
         | |||                          | ||| ||   |  | 
seq2  ---GGTCC-------------------------CAAGAACAGGCAAGAGG  197

seq1  CATTAGTTACTATTTCATTAACTTTTTTTTCCCAGTTGTGTTTGATTCTA  297
      ||                                         ||  | |
seq2  CA-----------------------------------------GAGACAA  206

seq1  CTCAATTTCTGTGGGCTATCCAGTCTCTTATTTCATGTCATCCAGGCAGT  347
      | |                |||                |  |||  | ||
seq2  CCC----------------CCA----------------CCGCCA--CTGT  222

seq1  TGAAGGCATAGTCTATTGTGGTATGAACACAAGTTAACCCACTGGTAAGA  397
      |  |||   ||||              ||||||  ||  ||||     ||
seq2  T--AGG---AGTC-------------CCACAAG--AA--CACT-----GA  245

seq1  GTTCCAAAACACCTCCAAGGTACTAGGCAAGACATATATGTGGAGGATCT  447
      | |  |||||                 || ||||||||||  ||||| ||
seq2  GCTATAAAAC-----------------CATGACATATATGCAGAGGACCT  278

seq1  -GATGTAA---AT--AGTGTGCTTTGTGCTTAA----GACTCTGTGAGCC  487
       | |  ||   ||  ||  | | ||    | ||    | |||||||||||
seq2  AGCTCAAACCCATGCAGCCTCCATTACTGTCAAATCCGTCTCTGTGAGCC  328

seq1  AATATGAACCCTACTTAGTTGATT  511
        ||||| |||| |||||||||||
seq2  CCTATGAGCCCTGCTTAGTTGATT  352


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