BAC Information

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BAC

Clone NameB6Ng01-178H24
Chromosome1 (Build37)
Map Location 165,418,211 - 165,575,111
singlet/doubletdoublet
Overlap geneLOC665237
Upstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H24.bB6Ng01-178H24.g
ACCGA005470GA005471
length8371,146
definitionB6Ng01-178H24.b B6Ng01-178H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,574,276 - 165,575,111)(165,418,211 - 165,419,081)
sequence
gaattctctgacagagtctgtgcctacaaggcagattggggttgtctttg
ttgctctgatataccataataaaatttgacaaacttcgtctctttttcat
ctttgagttgacaattaaaactttaagttagaagctcatgttgtaacaaa
ggctgctgtttcatatatttttaaattgaaatttcaagtgggaagtatct
ctttacttttagattaatctataacaacatgatatctactatcatttatt
ttaaaaggcatacatgtttcctaaacagctaaatgacgttgaataatttc
acctgtttctccaatatgttccctttcaacttgtatcttagaatataata
gccatgttttctcatacttgtgtaacaacaatgaaaaaatgagatcctac
tgtttcattgtctaatctctacactcagatttcatgtaaaaaatcaagat
ccctttagtacaattttagatcagcccagtggttcttaaaaatttcttgt
agcctagagtttgaagatatatacagttcttttgtgttatcttgagaatt
attctccatgtacaaatgatcagaacaaatacttaactataattattaaa
tatcaaaagtagatgccttggggagctactctttgtgtggtctatgagaa
aatttgtgcagctttgactaactgagatggcatgggtactttaaattgct
cctttatttgacattccagaaattacagcatctcaggacagtgccctaca
gggagggggtcatgatgtacattttgtttgtcaagtggaagaaaggctac
gcatgtgaaacgaggagggagaaggggggagggatgt
gaattccaccctttggaataggtagcaagtgggaacttggggcagatgta
cttgtctggatgggtccatgagaagtagtagagtgagtttcctgtagctt
ataagtttataaaagagatagcatgagttagcagcatgagcagtctttaa
aatgagccttttgtggagcagaaggaactggattaaaaagttggatcatt
ttattagagttaggcaaatttataggaactcagataatattatagcagtg
gcatagcaagaagaggaaatatgaagcatttaattaatggaaacagttta
ggtaaggagatatcagactatatctgtgaaagctttcttctagctgtcaa
tgtagtcaaaagtctgagaaataaacaaaaatctagcagctatataccag
ttatatattatttaaaacatgacagtccactagcaaacagttctctgtgg
tctctatagtctccatggcaacttgggctgtcagtgtagctttcaagcac
agaagatgcagggctttttctctgtggaatggatacacgtgacatgagaa
atggcttatcttggcttagctaagtcatttgactcagagtacccagtttt
gtccactgcgtatttcagtgatcatcatatcaccatccagacggcatcct
gtagctctgtccacatcttctgagacttcgtgggagaaaccttagaggct
tttgggaattctgtcagtcataaacttaacagtcaacaaacttctgacaa
gattgagctcgatatagattggttataactgaacaggatttaatgacagt
agtaaaaatcatactgggacaggatagaaatgagaacctttaggtaactt
tagcaaaggaggcatatggctaggaaccaggtataagacagctgggcaac
agtggcaataaaaatttgtggtgacaagaaaaacgagttttgtccaggca
gctttaggcctgttgacaataaactgagcacgcaggcaagcatggggcct
gtcactgaccctttgtactggcgtcctgagtaaagagcttggttgacagg
tccgtagacagttcaacctagaaacctcagggtcgtcatgtgaattactt
gagactctggcatggggcagtctgataaattctttttcatttaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165574276_165575111
seq2: B6Ng01-178H24.b_33_869 (reverse)

seq1  ACATCCCT-CCCCCTTCTCCCTCCTCGTTTCACATGCGTAGCCTTTCTTC  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTCCCCCCTTCTCCCTCCTCGTTTCACATGCGTAGCCTTTCTTC  50

seq1  CACTTGACAAACAAAATGTACATCATGACCCCCTCCCTGTAGGGCACTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACAAACAAAATGTACATCATGACCCCCTCCCTGTAGGGCACTGT  100

seq1  CCTGAGATGCTGTAATTTCTGGAATGTCAAATAAAGGAGCAATTTAAAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGCTGTAATTTCTGGAATGTCAAATAAAGGAGCAATTTAAAGT  150

seq1  ACCCATGCCATCTCAGTTAGTCAAAGCTGCACAAATTTTCTCATAGACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCCATCTCAGTTAGTCAAAGCTGCACAAATTTTCTCATAGACCA  200

seq1  CACAAAGAGTAGCTCCCCAAGGCATCTACTTTTGATATTTAATAATTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAGTAGCTCCCCAAGGCATCTACTTTTGATATTTAATAATTATA  250

seq1  GTTAAGTATTTGTTCTGATCATTTGTACATGGAGAATAATTCTCAAGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTATTTGTTCTGATCATTTGTACATGGAGAATAATTCTCAAGATA  300

seq1  ACACAAAAGAACTGTATATATCTTCAAACTCTAGGCTACAAGAAATTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGAACTGTATATATCTTCAAACTCTAGGCTACAAGAAATTTTT  350

seq1  AAGAACCACTGGGCTGATCTAAAATTGTACTAAAGGGATCTTGATTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCACTGGGCTGATCTAAAATTGTACTAAAGGGATCTTGATTTTTT  400

seq1  ACATGAAATCTGAGTGTAGAGATTAGACAATGAAACAGTAGGATCTCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATCTGAGTGTAGAGATTAGACAATGAAACAGTAGGATCTCATT  450

seq1  TTTTCATTGTTGTTACACAAGTATGAGAAAACATGGCTATTATATTCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTGTTGTTACACAAGTATGAGAAAACATGGCTATTATATTCTAA  500

seq1  GATACAAGTTGAAAGGGAACATATTGGAGAAACAGGTGAAATTATTCAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGTTGAAAGGGAACATATTGGAGAAACAGGTGAAATTATTCAAC  550

seq1  GTCATTTAGCTGTTTAGGAAACATGTATGCCTTTTAAAATAAATGATAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAGCTGTTTAGGAAACATGTATGCCTTTTAAAATAAATGATAGT  600

seq1  AGATATCATGTTGTTATAGATTAATCTAAAAGTAAAGAGATACTTCCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCATGTTGTTATAGATTAATCTAAAAGTAAAGAGATACTTCCCAC  650

seq1  TTGAAATTTCAATTTAAAAATATATGAAACAGCAGCCTTTGTTACAACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTCAATTTAAAAATATATGAAACAGCAGCCTTTGTTACAACAT  700

seq1  GAGCTTCTAACTTAAAGTTTTAATTGTCAACTCAAAGATGAAAAAGAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCTAACTTAAAGTTTTAATTGTCAACTCAAAGATGAAAAAGAGAC  750

seq1  GAAGTTTGTCAAATTTTATTATGGTATATCAGAGCAACAAAGACAACCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGTCAAATTTTATTATGGTATATCAGAGCAACAAAGACAACCCC  800

seq1  AATCTGCCTTGTAGGCACAGACTCTGTCAGAGAATTC  836
      |||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCTTGTAGGCACAGACTCTGTCAGAGAATTC  837

seq1: chr1_165418211_165419081
seq2: B6Ng01-178H24.g_320_1207

seq1  AGAAGAGGAAATATGAAGCATTTAATTAATGGAAACAGTTTAGGTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAAATATGAAGCATTTAATTAATGGAAACAGTTTAGGTAAGGA  50

seq1  GATATCAGACTATATCTGTGAAAGCTTTCTTCTAGCTGTCAATGTAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGACTATATCTGTGAAAGCTTTCTTCTAGCTGTCAATGTAGTCA  100

seq1  AAAGTCTGAGAAATAAACAAAAATCTAGCAGCTATATACCAGTTATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGAGAAATAAACAAAAATCTAGCAGCTATATACCAGTTATATAT  150

seq1  TATTTAAAACATGACAGTCCACTAGCAAACAGTTCTCTGTGGTCTCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACATGACAGTCCACTAGCAAACAGTTCTCTGTGGTCTCTATA  200

seq1  GTCTCCATGGCAACTTGGGCTGTCAGTGTAGCTTTCAAGCACAGAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGGCAACTTGGGCTGTCAGTGTAGCTTTCAAGCACAGAAGATG  250

seq1  CAGGGCTTTTTCTCTGTGGAATGGATACACGTGACATGAGAAATGGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTTTCTCTGTGGAATGGATACACGTGACATGAGAAATGGCTTA  300

seq1  TCTTGGCTTAGCTAAGTCATTTGACTCAGAGTACCCAGTTTTGTCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTTAGCTAAGTCATTTGACTCAGAGTACCCAGTTTTGTCCACTG  350

seq1  CGTATTTCAGTGATCATCATATCACCATCCAGACGGCATCCTGTAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTCAGTGATCATCATATCACCATCCAGACGGCATCCTGTAGCTCT  400

seq1  GTCCACATCTTCTGAGACTTCGTGGGAGAAACCTTAGAGGCTTTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATCTTCTGAGACTTCGTGGGAGAAACCTTAGAGGCTTTTGGGAA  450

seq1  TTCTGTCAGTCATAAACTTAACAGTCAACAAACTTCTGACAAGATTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGTCATAAACTTAACAGTCAACAAACTTCTGACAAGATTGAGC  500

seq1  TCGATATAGATTGGTTATAACTGAACAGGATTTAATGACAGTAGTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATAGATTGGTTATAACTGAACAGGATTTAATGACAGTAGTAAAAA  550

seq1  TCATACT-GGACAGGATAGAAATGAGAACC-TTAGGTAACTTTAGCAAA-  597
      ||||||| |||||||||||||||||||||| |||||||||||||||||| 
seq2  TCATACTGGGACAGGATAGAAATGAGAACCTTTAGGTAACTTTAGCAAAG  600

seq1  GAGGCATATGGCTA-GAACCA-GTATAAGACAGCT-GGCAACAGTGGC-A  643
      |||||||||||||| |||||| ||||||||||||| |||||||||||| |
seq2  GAGGCATATGGCTAGGAACCAGGTATAAGACAGCTGGGCAACAGTGGCAA  650

seq1  TAAAA--TTGTGGTGACA--GAAAACGAG-TTTGTCCAGGCAGCTTTAAG  688
      |||||  |||||||||||   |||||||| |||||||||||||||||| |
seq2  TAAAAATTTGTGGTGACAAGAAAAACGAGTTTTGTCCAGGCAGCTTTAGG  700

seq1  CCTG-TGAC-ATAAACTGAGCACGCAGGC-AGCATGGGG-CTGTCACTGA  734
      |||| |||| ||||||||||||||||||| ||||||||| ||||||||| 
seq2  CCTGTTGACAATAAACTGAGCACGCAGGCAAGCATGGGGCCTGTCACTG-  749

seq1  ACCTTTTGTACTGGCGTCCTGAGTAAAGAGCTTGG-TGACAGGTCCGTAG  783
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCCTTTGTACTGGCGTCCTGAGTAAAGAGCTTGGTTGACAGGTCCGTAG  799

seq1  ACAG-TCAAACTAGAAA-CTCA-GGTCGTCATGTGAATAACTTGAGACTT  830
      |||| |||| ||||||| |||| ||||||||||||||| |||||||||| 
seq2  ACAGTTCAACCTAGAAACCTCAGGGTCGTCATGTGAATTACTTGAGACTC  849

seq1  TGGCAGTGGGCAGCTTGATAAAATTTCTTTTCATTTTAATG  871
      |||||  ||||||  |||||||  |||||||   |||||||
seq2  TGGCATGGGGCAGTCTGATAAA--TTCTTTTTCATTTAATG  888