BAC Information

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BAC

Clone NameB6Ng01-178L10
Chromosome1 (Build37)
Map Location 175,556,066 - 175,557,191
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
Downstream geneAI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178L10.bB6Ng01-178L10.g
ACCGA005623GA005624
length1,2321,117
definitionB6Ng01-178L10.b B6Ng01-178L10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatttaatgcaaacca
acagccaatatcaaattaaatgaagacatacttgaagcaatcccactgaa
atcggagacaagacaaggattcccactctccccatatctattcaatatag
tacttgaagtgttagctagaacaataagacaacagaaagagatcaatggg
atacatattggtaaaaaagaaatcaaggtatcactatttgcaagtgatat
gatagcatacataagcaatcccaaaaattctacctgagaacttctccagc
tgataaacaacttcagcaaagtggttggatataaaattaactcaaataaa
tcagtaaacttcctgtatacaaaggataaacagcctgagaaagaaattag
ggaagcaattcccttcacaatagccacaagtagtataaaatatcttggga
taattctaactaacaagtaaaagacctgtatgacaataacttcaagtttc
tcaagaaagaaattgaagaagatctcagaaaatggagagcgctcccatgc
ttgtggattggcagaattaacatagtaaaactaaccatcttaccaaagac
aatctacagattcaatgcaaaccccatcaaaatcccaacacaattcttca
aagacatggaaagagcaattctcaaattcgcctggaaaagcaaaaaaccc
agactagggaaaacaattcttaataatgaaagaatggctggagggatcac
caaccctgacctcaagctttactatagagcaattgtggtaaaaactgcat
ggtattggtacagagacagatatgttgactaatggaatacaattgaagac
ccagaaatgaaaccacatactcatggtcacttgatttttgacaaggaagt
aaaaaaatatacaatggaataaagaaagtgtcttcattaatggtgctggt
tataactggctgtctgtatgtagaagaataaaaacagacctatatatgtc
attcttgtacaaagctcagtccaagtgatctagacctcacataaaccaga
atacatttgattctaatagaaagagtgggaagagcctcaaaccattgggc
acagggggccagttcctaacagaacttccatggttcatgcctctagatca
gaatgataattgactcatggactggaaggttctgtaggccaaggaacata
ggtcagtttagaacacaaactcggctaaccta
gaattcagtaatcactgtattgtttggagtcgtgactattgaaattctgg
gttcttcttttatctcatattggtgctagaacctgttcctggatgtatgc
ttgacttttcctgtgctcttggccaaagtgcaaagggtctgcatcctctt
gtcatatagaggaatcatggttgagagcttcactgtggcccttgctcact
tcctgtttcttaaacagttctcactataatctcgtattccttggtattta
tgcccttgttttgcattctgtgccccaatgactgccatgctgaacatctg
aacaattgatgatttaatttgttaataggactttctatctacaagtcatt
gtaaaatcctgctagagttctgcatctattgtaaaatacaaaaggtttaa
aattgaaaaggtttgaactattttgtgacttgtgacaatacaagtatatc
caaaatatagttggatgtgagatgacaaataactatggatacttttatga
atctgaattacatatgaacattcatgttttgttgtagaaatattattaat
gttttgccatatgattgcattcagaatatgtgagtgtgcagttgccacat
tttagatactagaatatattcaactccactggtataaataggtgctggag
ctaaacataattccaatctagtcttagtagttttattattttttttaatt
ggttaatttatttatttacatttcagatgttatcctccttccaggtttcc
cctctgcaagtcccccaatgtcaggcactctggtggagtcaacctgtgag
gcagaaatgccaaaaagctgctcatgagaaatgaatttctaggactctcc
tcctggatattctgtcgaaagccaactctccagtttggattggtttgtca
gcgaaaagcctggaagcttgttttcaggaggatagagtccatggaaattt
tcctcccagagttatggcatttctttcccctacccatatataaaatttcc
cacccacattaatcttagtgtatagatcaccgtgcacctctattaagcat
actataggtaaatgccttttaagatgtatctcacatagcctagcttttcc
aggttctagattccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175556066_175557191
seq2: B6Ng01-178L10.g_67_1183 (reverse)

seq1  ACTGGAATCTAAGAACACTGGGAAAAGGCTTTAGCTATGTGAGAATACAA  50
      |||||||||| ||||| || |||||||   |  |||||||||| |||| |
seq2  ACTGGAATCT-AGAAC-CT-GGAAAAG--CTAGGCTATGTGAG-ATAC-A  43

seq1  TCTTAAAAGGCATTTA-CTATAAGGTAATGCTTAATAGA-GTGCACGTGA  98
      |||||||||||||||| |||||  || |||||||||||| |||||||   
seq2  TCTTAAAAGGCATTTACCTATA--GT-ATGCTTAATAGAGGTGCACGGTG  90

seq1  ATCTATACACT-AGATTAATGT-GGTGGAAATTTTAATATAATGGGTTAG  146
      ||||||||||| |||||||||| ||||| || ||| |||| ||||||  |
seq2  ATCTATACACTAAGATTAATGTGGGTGGGAAATTTTATAT-ATGGGTAGG  139

seq1  GGAAAGAAATGCCATAACTCTGGGAGGAAAATTTCCATGGACTTCTTATC  196
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  GGAAAGAAATGCCATAACTCTGGGAGGAAAATTTCCATGGACT--CTATC  187

seq1  CTCCTGAAA--CAGCTTCCAGGCTTTTCGCCTGACAAACCAATCCAAACT  244
      |||||||||   ||||||||||||||||| ||||||||||||||||||||
seq2  CTCCTGAAAACAAGCTTCCAGGCTTTTCG-CTGACAAACCAATCCAAACT  236

seq1  GGAGAGTTGGCTTTCGACAGAATATCCAGGAGGAGAGTCCTAGAAATTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTGGCTTTCGACAGAATATCCAGGAGGAGAGTCCTAGAAATTCA  286

seq1  TTTCTCATGAGCAGCTTTTTGGCATTTCTGCCTCACAGGTTGACTCCACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGAGCAGCTTTTTGGCATTTCTGCCTCACAGGTTGACTCCACC  336

seq1  AGAGTGCCCTGACATTGGGGGACTTGCAGAGGGGAAACCTGGAAGGAGGA  394
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTG-CCTGACATTGGGGGACTTGCAGAGGGGAAACCTGGAAGGAGGA  385

seq1  TAACATCTGAAATGTAAATAAATAAATTAACCAATTAAAAAAAATAATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTGAAATGTAAATAAATAAATTAACCAATTAAAAAAAATAATAA  435

seq1  AACTACTAAGACTAGATTGGAATTATGTTTAGCTCCAGCACCTATTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTAAGACTAGATTGGAATTATGTTTAGCTCCAGCACCTATTTATA  485

seq1  CCAGTGGAGTTGAATATATTCTAGTATCTAAAATGTGGCAACTGCACACT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAGTTGAATATATTCTAGTATCTAAAATGTGGCAACTGCACACT  535

seq1  CACATATTCTGAATGCAATCATATGGCAAAACATTAATAATATTTCTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTCTGAATGCAATCATATGGCAAAACATTAATAATATTTCTACA  585

seq1  ACAAAACATGAATGTTCATATGTAATTCAGATTCATAAAAGTATCCATAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATGAATGTTCATATGTAATTCAGATTCATAAAAGTATCCATAG  635

seq1  TTATTTGTCATCTCACATCCAACTATATTTTGGATATACTTGTATTGTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTCATCTCACATCCAACTATATTTTGGATATACTTGTATTGTCA  685

seq1  CAAGTCACAAAATAGTTCAAACCTTTTCAATTTTAAACCTTTTGTATTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACAAAATAGTTCAAACCTTTTCAATTTTAAACCTTTTGTATTTT  735

seq1  ACAATAGATGCAGAACTCTAGCAGGATTTTACAATGACTTGTAGATAGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGATGCAGAACTCTAGCAGGATTTTACAATGACTTGTAGATAGAA  785

seq1  AGTCCTATTAACAAATTAAATCATCAATTGTTCAGATGTTCAGCATGGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATTAACAAATTAAATCATCAATTGTTCAGATGTTCAGCATGGCA  835

seq1  GTCATTGGGGCACAGAATGCAAAACAAGGGCATAAATACCAAGGAATACG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGGGCACAGAATGCAAAACAAGGGCATAAATACCAAGGAATACG  885

seq1  AGATTATAGTGAGAACTGTTTAAGAAACAGGAAGTGAGCAAGGGCCACAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAGTGAGAACTGTTTAAGAAACAGGAAGTGAGCAAGGGCCACAG  935

seq1  TGAAGCTCTCAACCATGATTCCTCTATATGACAAGAGGATGCAGACCCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCTCAACCATGATTCCTCTATATGACAAGAGGATGCAGACCCTT  985

seq1  TGCACTTTGGCCAAGAGCACAGGAAAAGTCAAGCATACATCCAGGAACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTGGCCAAGAGCACAGGAAAAGTCAAGCATACATCCAGGAACAG  1035

seq1  GTTCTAGCACCAATATGAGATAAAAGAAGAACCCAGAATTTCAATAGTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGCACCAATATGAGATAAAAGAAGAACCCAGAATTTCAATAGTCA  1085

seq1  CGACTCCAAACAATACAGTGATTACTGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  CGACTCCAAACAATACAGTGATTACTGAATTC  1117