BAC Information

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BAC

Clone NameB6Ng01-178M03
Chromosome1 (Build37)
Map Location 195,565,344 - 195,566,406
singlet/doubletsinglet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178M03.b
ACCGA005657
length1,131
definitionB6Ng01-178M03.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaagtttaccccttcccagggagtgtgtgcttgccttatcact
atttcccccccagtgacttagtaatagctgctttttaaggattttctcgc
tcgattgattatgggtcattgctagaaagtatcagtggttttaaggggag
gaaaattgcacttattaaacacagaggattgaattgtagctactatttgc
cattttctgttttaaaagcttattgtgataattttataatttaaccataa
aatttatactgttgggtaaccctttgaaaaatgacaatgctctaactaat
gaagggaaaactataaactacaaattttgctcatggaaaacaaagtgaac
tctgagtgttaggatactatctgatcaccactcactgagtgatattttgc
ttgaaaattgataaccaaataccgacttcaagactgctcatcctggcact
gctcagcactagccaatgaggttttgaggaaagcattggcaatgttgccg
agagatggtggaggtgttggagctcatgagccagctgccatacctagggg
tttcagctggcaagagcacccgacacttctgaaagaattaggagaggtgc
tttggaatgcacacagccacttgagctttcagagagcaggcacacacgtt
tctacacataatgggattaacactagaagaaaagaaaggtcaaaacgtaa
gatttctggttttgtgctacaaaagtggttcatatatctctagctctgca
gaaatataaagaaaaagcataatgaatttatttttcctggcatagtaaaa
gatgtctagaatttttagtgtgaagaatattttaacttccgatgtctata
aagattaaaatgtttattctaaaagataaatgactggcatttggccacct
ttttgactttctctcatagccctgtctacccagatagaagaatatagaag
ttgtcagtcctctgagattgcttctctgttctcctgcgttaatcctaagt
gatgcataccgggcattacacagctcttcttctgcaaaggcaattgccat
tgtgaatgaccaccattttcctaattactggttgtcgtttacctagatag
agtgcctatacacgtggattataaccaccag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195565344_195566406
seq2: B6Ng01-178M03.b_101_1169

seq1  GTGACTTACTAATAGCTGCTTTTTAATTATTTTCTCTCTCGATTGATTAT  50
      |||||||| |||||||||||||||||  |||||||| |||||||||||||
seq2  GTGACTTAGTAATAGCTGCTTTTTAAGGATTTTCTCGCTCGATTGATTAT  50

seq1  GGGTCATTGCTAGAAAGTATCAGTGGTTTTAAGGGGAGGAAAATTGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTGCTAGAAAGTATCAGTGGTTTTAAGGGGAGGAAAATTGCACT  100

seq1  TATTAAACACAGAGGATTGAATTGTAGCTACAATTTGCCATTTTCTGTTT  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATTAAACACAGAGGATTGAATTGTAGCTACTATTTGCCATTTTCTGTTT  150

seq1  TAAAACCTTATTTTTATAATTTTATAATTTAACCATAAAAGTTATACTGT  200
      ||||| |||||| | ||||||||||||||||||||||||| |||||||||
seq2  TAAAAGCTTATTGTGATAATTTTATAATTTAACCATAAAATTTATACTGT  200

seq1  TGGGTAACACTTTGAAAAATAACAATGCTCTAACTAATTAGGGGAAACCT  250
      |||||||| ||||||||||| ||||||||||||||||| | |||||| ||
seq2  TGGGTAACCCTTTGAAAAATGACAATGCTCTAACTAATGAAGGGAAAACT  250

seq1  ATAACCTACAAGTTTTGCTCATGGAAAAGAAAGTGAACGCTGAGTGTTAG  300
      |||| |||||| |||||||||||||||| ||||||||| |||||||||||
seq2  ATAAACTACAAATTTTGCTCATGGAAAACAAAGTGAACTCTGAGTGTTAG  300

seq1  GATACTAAGTGATCACCACTCACTGAGTGATATTTTGCTTGAAAATTGAT  350
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATCTGATCACCACTCACTGAGTGATATTTTGCTTGAAAATTGAT  350

seq1  AACCAAATACAGACTTAAAGACTGCAAATCCTGGCACTGCTCAGCACTAG  400
      |||||||||| ||||| ||||||||  |||||||||||||||||||||||
seq2  AACCAAATACCGACTTCAAGACTGCTCATCCTGGCACTGCTCAGCACTAG  400

seq1  CCAATGAGGTTTTGAGGAAAGCATTGGCAATGTTGCCGAGAGATGGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGTTTTGAGGAAAGCATTGGCAATGTTGCCGAGAGATGGTGGA  450

seq1  GGTGTTGGAGCTCATGAGCCAGCTGCCATACCTAGGGGTTTCAGCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGAGCTCATGAGCCAGCTGCCATACCTAGGGGTTTCAGCTGGCA  500

seq1  AGAGCACCCGACACTTCTGAAAGAATTAGGAGAGGTGCTTTGGAATGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCCGACACTTCTGAAAGAATTAGGAGAGGTGCTTTGGAATGCAC  550

seq1  ACAGCCACTTGAGCTTTCAGAGAGCAGGCACACACGTTTCTACACATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACTTGAGCTTTCAGAGAGCAGGCACACACGTTTCTACACATAAT  600

seq1  GGGATTAACACTAGAAGAAAAGAAAGGTCAAAACGTAAGATTTCTGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAACACTAGAAGAAAAGAAAGGTCAAAACGTAAGATTTCTGGTTT  650

seq1  TGTGCTAC-AAAGTGGTTCATATATCTCTAGCTCTGCAGAAATATAAAGA  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTACAAAAGTGGTTCATATATCTCTAGCTCTGCAGAAATATAAAGA  700

seq1  AAAAGCATAATGAATTTATTTTTCCTGGCATAGTAAAAGATGTCTAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATAATGAATTTATTTTTCCTGGCATAGTAAAAGATGTCTAGAAT  750

seq1  TTTTAGTGTGAAGAATATTTTAAACTTCCGATGTCTATAAAGATTAAAAT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTAGTGTGAAGAATATTTT-AACTTCCGATGTCTATAAAGATTAAAAT  799

seq1  GTTTATTCTAAAAGATAAATGACTGGCATTTGGCCACCTTTTTGACTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTAAAAGATAAATGACTGGCATTTGGCCACCTTTTTGACTTTC  849

seq1  TCTCATAGCCCTGTCTACCCAGATAAAAGAATATAGAAG-TGTCAGTCCT  898
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TCTCATAGCCCTGTCTACCCAGATAGAAGAATATAGAAGTTGTCAGTCCT  899

seq1  CTGAGAATGCTTCTCTGTTCTCCTGCGTTAATCCTAAGTGATGCATACCG  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTGCTTCTCTGTTCTCCTGCGTTAATCCTAAGTGATGCATACCG  949

seq1  GGCATTACACAGCTC-TCTCCTGCAAAGGC-ATTGCCATTGTTGATGA-C  995
      ||||||||||||||| ||| |||||||||| |||||||||||  |||| |
seq2  GGCATTACACAGCTCTTCTTCTGCAAAGGCAATTGCCATTGTGAATGACC  999

seq1  ACCATTTTCCTTATTTACT-GTTGTCGTTACACTAGATAAGGTGCTTAT-  1043
      |||||||||| || ||||| |||||||||   |||||||  |||| ||| 
seq2  ACCATTTTCC-TAATTACTGGTTGTCGTTTACCTAGATAGAGTGCCTATA  1048

seq1  CA-GTTGATTATAACCACCAG  1063
      || || |||||||||||||||
seq2  CACGTGGATTATAACCACCAG  1069