BAC Information

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BAC

Clone NameB6Ng01-178M21
Chromosome1 (Build37)
Map Location 175,969,083 - 176,051,777
singlet/doubletdoublet
Overlap geneOlfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244
Upstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205
Downstream geneOlfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178M21.bB6Ng01-178M21.g
ACCGA005690GA005691
length1,2041,135
definitionB6Ng01-178M21.b B6Ng01-178M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,969,083 - 175,970,286)(176,050,641 - 176,051,777)
sequence
gaattcaaactaaatattaaaagaaataaaacatacaaagttgctgactg
tgatctggacacttaagagggtatctgtctggtatcagatctcctttcct
ccatatacacgacagatggtgcttagaaatgggatttacacatcatttcc
catggttcgatcattatttctgatgctttttctccttaatatctttgaat
ttgtcccttaacccctttgttgcttgtctttccctcttgtgaaatgagga
cagtagataagctgagagaattcatctgttaaagtatttgatacatgtaa
aacacatggggagtaagtgtctatgtgaggaagacactacttgaactttt
tacatataaattccataatggaggttcttgtttggcttttatatatttca
cattcatcatgtgcaggtcagtcaaactggtaataattcaactcagccct
tgcctttgtaccaacatgtacagtgacaccctggagaattctgtcattct
tcttgcctatgtgaaatgggtaccataactcagttttctccttacttttt
gtcttcctaatggcagttagttcaaccatctatattgagcagtagtttgg
aggagaacagaatattacccaagcagcacactacttggtaacgcctaaaa
gaagtgctgactctctcctagagtaaattaattcatctctaggctctata
cttgatgatgacaccaaaagacctaaagacgttttatggagtgttcagta
gtcacccaacaatgcaagcaaataaatgctcattgttgattactagagca
gcacacagtgtcatcatgtgaaagtgaatttttaaggtgagcacaattgt
tccagtagataatataactctatcctttataataaagtaagccacagggc
atataacatgagtgagtgcttctccaactttaaaacctagtttccccctt
ttctgtgctttgaaacccaccatattcatcaaaataaattttaattgtgt
ttttacaacttgtaagcaaactaatgtaagtgttatttacacattctgga
tttttttttcatattcatttctgggaagtgtgttctcatttttatagatg
agatcatgaatctcctggtttgttttgattggcttgttttgcttttaagc
aggcgtgctacagactcttgaagtgctaactggcatgccttgttctggct
ctca
gaattcagaaaaacttgaataggaaaatccttatcaagatatttttaagt
cacgaaattttgtttaaaaaataaaaataaaaacctaaccaaccaaacaa
aaataaccaaacttataactttgtatcaattcatctcacatatatggttt
gaaatttttaatacatgtatgtgtataggtagtgaaggaaatagaaatga
acgtggaactgaggggaaagccaggttttctgaatggatcttccttaaag
tctactgtgagtttttgtcttctttgtttactggtacttctgcatgatag
acaggctttgtagtcacgggagaatccatgggaatgaccctgggggaaga
ctcatttctctgtttcactttcctcttaatttgtccctgagagaagcata
ggctcctccctttagaaattatatcatctaaagaaaaacacccaaaaagg
gtatctctccattctatatatcccacaaaggagtcttcagagacatctct
atactcaccagtgtgtatagaagtcaccctggctgcagacactgaggagt
gcttggtggtctctggcagggtgagttgggcagacagctactgaaatcca
accttcagtgagacttctgctctctccctgctccttcctgtaggctctct
acactttcgaatctagctcttgacttttggaatttcagtacgttagtaaa
gaatttcagttatgagacatgaaatggaaagaggacactagaaggaagag
aggccacttaactgatgaaggtattagtatctaaagtcttctgagcccta
caattcaattggttcaaacaattccagccttcaagggagtcatcagtcaa
ggtaacattttttgtttaatcattaaatactaaatcagatctctttactg
tacaagtcatatttgtagggtggcttttttatattctgctagttttctgt
cattccatgagttatttttacatcattacattattattacattgttttta
cattctcatcgttttaggcatcatgatttttgtttcatatagttctgaaa
catttggggagtaatcagaccatcttgtatgtcagtggacaattgatgga
tggttgaataaacgacgcctacctgggtgagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175969083_175970286
seq2: B6Ng01-178M21.b_43_1246

seq1  GAATTCAAACTAAATATTAAAAGAAATAAAACATACAAAGTTGCTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTAAATATTAAAAGAAATAAAACATACAAAGTTGCTGACTG  50

seq1  TGATCTGGACACTTAAGAGGGTATCTGTCTGGTATCAGATCTCCTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGACACTTAAGAGGGTATCTGTCTGGTATCAGATCTCCTTTCCT  100

seq1  CCATATACACGACAGATGGTGCTTAGAAATGGGATTTACACATCATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACACGACAGATGGTGCTTAGAAATGGGATTTACACATCATTTCC  150

seq1  CATGGTTCGATCATTATTTCTGATGCTTTTTCTCCTTAATATCTTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCGATCATTATTTCTGATGCTTTTTCTCCTTAATATCTTTGAAT  200

seq1  TTGTCCCTTAACCCCTTTGTTGCTTGTCTTTCCCTCTTGTGAAATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTTAACCCCTTTGTTGCTTGTCTTTCCCTCTTGTGAAATGAGGA  250

seq1  CAGTAGATAAGCTGAGAGAATTCATCTGTTAAAGTATTTGATACATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATAAGCTGAGAGAATTCATCTGTTAAAGTATTTGATACATGTAA  300

seq1  AACACATGGGGAGTAAGTGTCTATGTGAGGAAGACACTACTTGAACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGGGGAGTAAGTGTCTATGTGAGGAAGACACTACTTGAACTTTT  350

seq1  TACATATAAATTCCATAATGGAGGTTCTTGTTTGGCTTTTATATATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAAATTCCATAATGGAGGTTCTTGTTTGGCTTTTATATATTTCA  400

seq1  CATTCATCATGTGCAGGTCAGTCAAACTGGTAATAATTCAACTCAGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCATGTGCAGGTCAGTCAAACTGGTAATAATTCAACTCAGCCCT  450

seq1  TGCCTTTGTACCAACATGTACAGTGACACCCTGGAGAATTCTGTCATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTACCAACATGTACAGTGACACCCTGGAGAATTCTGTCATTCT  500

seq1  TCTTGCCTATGTGAAATGGGTACCATAACTCAGTTTTCTCCTTACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTATGTGAAATGGGTACCATAACTCAGTTTTCTCCTTACTTTTT  550

seq1  GTCTTCCTAATGGCAGTTAGTTCAACCATCTATATTGAGCAGTAGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTAATGGCAGTTAGTTCAACCATCTATATTGAGCAGTAGTTTGG  600

seq1  AGGAGAACAGAATATTACCCAAGCAGCACACTACTTGGTAACGCCTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACAGAATATTACCCAAGCAGCACACTACTTGGTAACGCCTAAAA  650

seq1  GAAGTGCTGACTCTCTCCTAGAGTAAATTAATTCATCTCTAGGCTCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTGACTCTCTCCTAGAGTAAATTAATTCATCTCTAGGCTCTATA  700

seq1  CTTGATGATGACACCAAAAGACCTAAAGACGTTTTATGGAGTGTTCAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGATGACACCAAAAGACCTAAAGACGTTTTATGGAGTGTTCAGTA  750

seq1  GTCACCCAACAATGCAAGCAAATAAATGCTCATTGTTGATTACTAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCAACAATGCAAGCAAATAAATGCTCATTGTTGATTACTAGAGCA  800

seq1  GCACACAGTGTCATCATGTGAAAGTGAATTTTTAAGGTGAGCACAATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTGTCATCATGTGAAAGTGAATTTTTAAGGTGAGCACAATTGT  850

seq1  TCCAGTAGATAATATAACTCTATCCTTTATAATAAAGTAAGCCACAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGATAATATAACTCTATCCTTTATAATAAAGTAAGCCACAGGGC  900

seq1  ATATAACATGAGTGAGTGCTTCTCCAACTTTAAAACCTAGTTTCCCCC-T  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATAACATGAGTGAGTGCTTCTCCAACTTTAAAACCTAGTTTCCCCCTT  950

seq1  TTCTGTGCTTTGAAACCCACCATATTCATCAAAATAAATTTTAATTGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCTTTGAAACCCACCATATTCATCAAAATAAATTTTAATTGTGT  1000

seq1  TTTTACAACTTGTAAGCAAACTAATGTAAGTG-TATTTACACATTCTGGA  1048
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTACAACTTGTAAGCAAACTAATGTAAGTGTTATTTACACATTCTGGA  1050

seq1  TTTTTTTTTCATA-TCATTTCT-GGAAGTGTGTTCTCATTTTTATAGATG  1096
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TTTTTTTTTCATATTCATTTCTGGGAAGTGTGTTCTCATTTTTATAGATG  1100

seq1  AGATCCATGAAATCTCCTGGGTTTGTTTGTTTGTTTGTTTTTGTTTTTTA  1146
      |||| |||| |||||||||| ||  |||| |||  |  |||||  |||||
seq2  AGAT-CATG-AATCTCCTGGTTTGTTTTGATTGGCTTGTTTTG-CTTTTA  1147

seq1  AGCAGTCTTTTGCTACAGAGCTCTTGAGTTGCTAACTGGGCTGCCTTG-T  1195
      ||||| |   ||||||||| |||||||  ||||||||||  ||||||| |
seq2  AGCAGGC--GTGCTACAGA-CTCTTGAAGTGCTAACTGGCATGCCTTGTT  1194

seq1  CTGGC-CTCA  1204
      ||||| ||||
seq2  CTGGCTCTCA  1204

seq1: chr1_176050641_176051777
seq2: B6Ng01-178M21.g_64_1198 (reverse)

seq1  TTCTCTCA-CCAGTAAGCTGTCCTATTATTC-ACCATTCATCCATTGTTC  48
      |||||||| ||||  ||  ||| | |||||| ||||| |||| |||| ||
seq2  TTCTCTCACCCAGGTAGGCGTCGT-TTATTCAACCATCCATCAATTG-TC  48

seq1  AACTGACATACAAGATTGTCTGATAACT-CCCAAATGTTTCAGAACTATA  97
       ||||||||||||||| ||||||| ||| |||||||||||||||||||||
seq2  CACTGACATACAAGATGGTCTGATTACTCCCCAAATGTTTCAGAACTATA  98

seq1  TGAAACAAAAATCATGATTGCCCTTAAAACGATGAAGAATGTAAAAACAA  147
      ||||||||||||||||| ||||  |||||||||| |||||||||||||||
seq2  TGAAACAAAAATCATGA-TGCC--TAAAACGATG-AGAATGTAAAAACAA  144

seq1  TGTAATAATAATGTAATGATGTAAAAATAACTCATGGAATGACAGAAAAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAATAATGTAATGATGTAAAAATAACTCATGGAATGACAGAAAAC  194

seq1  TAGCAGAATATAAAAAAGCCACCCTACAAATATGACTTGTACAGTAAAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAATATAAAAAAGCCACCCTACAAATATGACTTGTACAGTAAAGA  244

seq1  GATCTGATTTAGTATTTAATGATTAAAC-AAAAATGTTACCTTGACTGAT  296
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATCTGATTTAGTATTTAATGATTAAACAAAAAATGTTACCTTGACTGAT  294

seq1  GACTCCCTTGAAGGCTGGAATTGTTTGAACCAATTGAATTGTAGGGCTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTTGAAGGCTGGAATTGTTTGAACCAATTGAATTGTAGGGCTCA  344

seq1  GAAGACTTTAGATACTAATACCTTCATCAGTTAAGTGGCCTCTCTTCCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTTAGATACTAATACCTTCATCAGTTAAGTGGCCTCTCTTCCTT  394

seq1  CTAGTGTCCTCTTTCCATTTCATGTCTCATAACTGAAATTCTTTACTAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCCTCTTTCCATTTCATGTCTCATAACTGAAATTCTTTACTAAC  444

seq1  GTACTGAAATTCCAAAAGTCAAGAGCTAGATTCGAAAGTGTAGAGAGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAATTCCAAAAGTCAAGAGCTAGATTCGAAAGTGTAGAGAGCCT  494

seq1  ACAGGAAGGAGCAGGGAGAGAGCAGAAGTCTCACTGAAGGTTGGATTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGAGCAGGGAGAGAGCAGAAGTCTCACTGAAGGTTGGATTTCA  544

seq1  GTAGCTGTCTGCCCAACTCACCCTGCCAGAGACCACCAAGCACTCCTCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTCTGCCCAACTCACCCTGCCAGAGACCACCAAGCACTCCTCAG  594

seq1  TGTCTGCAGCCAGGGTGACTTCTATACACACTGGTGAGTATAGAGATGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGCCAGGGTGACTTCTATACACACTGGTGAGTATAGAGATGTC  644

seq1  TCTGAAGACTCCTTTGTGGGATATATAGAATGGAGAGATACCCTTTTTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACTCCTTTGTGGGATATATAGAATGGAGAGATACCCTTTTTGG  694

seq1  GTGTTTTTCTTTAGATGATATAATTTCTAAAGGGAGGAGCCTATGCTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCTTTAGATGATATAATTTCTAAAGGGAGGAGCCTATGCTTCT  744

seq1  CTCAGGGACAAATTAAGAGGAAAGTGAAACAGAGAAATGAGTCTTCCCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACAAATTAAGAGGAAAGTGAAACAGAGAAATGAGTCTTCCCCC  794

seq1  AGGGTCATTCCCATGGATTCTCCCGTGACTACAAAGCCTGTCTATCATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATTCCCATGGATTCTCCCGTGACTACAAAGCCTGTCTATCATGC  844

seq1  AGAAGTACCAGTAAACAAAGAAGACAAAAACTCACAGTAGACTTTAAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACCAGTAAACAAAGAAGACAAAAACTCACAGTAGACTTTAAGGA  894

seq1  AGATCCATTCAGAAAACCTGGCTTTCCCCTCAGTTCCACGTTCATTTCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATTCAGAAAACCTGGCTTTCCCCTCAGTTCCACGTTCATTTCTA  944

seq1  TTTCCTTCACTACCTATACACATACATGTATTAAAAATTTCAAACCATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCACTACCTATACACATACATGTATTAAAAATTTCAAACCATAT  994

seq1  ATGTGAGATGAATTGATACAAAGTTATAAGTTTGGTTATTTTTGTTTGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGATGAATTGATACAAAGTTATAAGTTTGGTTATTTTTGTTTGGT  1044

seq1  TGGTTAGGTTTTTATTTTTATTTTTTAAACAAAATTTCGTGACTTAAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGGTTTTTATTTTTATTTTTTAAACAAAATTTCGTGACTTAAAAA  1094

seq1  TATCTTGATAAGGATTTTCCTATTCAAGTTTTTCTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATAAGGATTTTCCTATTCAAGTTTTTCTGAATTC  1135