BAC Information

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BAC

Clone NameB6Ng01-179C03
Chromosome1 (Build37)
Map Location 129,871,106 - 130,027,612
singlet/doubletdoublet
Overlap geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1
Downstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179C03.bB6Ng01-179C03.g
ACCGA005939GA005940
length1,004851
definitionB6Ng01-179C03.b B6Ng01-179C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,871,106 - 129,872,115)(130,026,782 - 130,027,612)
sequence
gaattctagcctggacatgttcaccttgacggccccactggaaaacctta
tcacatcgattttgtaggttccttggataaaacctctcgggcactcaaat
cccacatataaagttgggcaatttctgctgctggttgttgatattatcat
tcagtgtatactatgccctattgatttcaaagcagctttcacaaactgca
gcaaccatatggctcctttaatgcttttggattctactgtttcttcaaga
gttttaagaaagcaatattaaaattttaattagaattcattctgcccttt
aataccttgtgggtacaaacaaatcaaggtaccagctcattatgcctatt
gtaaaaatgtaaacctgagcactgtcgtgttgaaacgcactgttacttga
aactcttatcttttccctaagcaggctacttcacgctcacaactggagtt
tatttcttcaggtttcttggcatgctgcttattcaatcctaggtctaaaa
actttcgctgatgttcctagcatcaaaagggaaaatgagaactatcaaac
acataataaactaggatttttttttttcctaagctagtcactttctactc
ttgctgtgagctaactttagagttgctttattttgattgcaccagctggg
attgcagggggtcatgttaactgtggcaaggacatcacatggagagagtg
tgtggctctagttttgtttcagagaacatgtgcccacatgacaaatacag
ctacccagacggtcacttgtcaattctgatagagctcacaaatgtgagag
aggaaagactcaggttctgtttcctccggattaacactgagaggaggagg
ggtggggaaactagaacattatagtctctagtcacaactgagaagagccc
gctgctagaatcatgaatctacaggagaaccacaggaagaacttgacctt
tgattaatcaccctgtctttagtgaccaaatccgtcaatgacacattttt
tcat
gaattcatgataaatttattactgtgttaatacattatgaatttcttttg
catacaattaaacgaaccaaggaagaatggtcagctataggagctctgag
tttcatgatagtatttgcatgaaaaggagagtacagctgtaagaaatgta
tctttattagctatatatggtaaaagaggataaccactaaaaaaaaaaag
aagaaaaagagtaaatacccttcaaattagacaaagagacaaaaataagc
tagcaacaaacaactacttctttgacaatctttttattgctaattacccc
taataaacatgtgaaccaagcagcacacacccaaactccctgttctggat
ctgtcattagagtcaagcagggttttgaaatacactggggatagcaggtg
gtgtatggtcttaggcctcagtctgtgttttatcatttttaatcattaaa
aaatgcccttctttgcaaaaaagggtaaaatatatagctaatacgctaca
ataacatgatgtggtatataagtggatgttgaaatttcaagatatagtag
aattttactgtttttaaaaatctgaattctaatacactgtttcaaaataa
caatcttttttattttataaaagtaaaatattttctaagtaagtcggaac
ctacggctctcaatcatgttctcatacgcagagatttaccaatgacctca
gatatagcaatccctgggatgattacaagtatttggcttttgtaaccatc
atttcacttagcatgcctttcaagatacaaacataatttgtgaaaataat
attgtactaatttctgtaagccattatgcattctaatatacacctgtaac
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129871106_129872115
seq2: B6Ng01-179C03.b_43_1046

seq1  GAATTCTAGCCTGGAACATGTTAACCTTGAGGGCCCCACTGG-GTACCAA  49
      |||||||||||||| ||||||| ||||||| |||||||||||   |||  
seq2  GAATTCTAGCCTGG-ACATGTTCACCTTGACGGCCCCACTGGAAAACCTT  49

seq1  AGCAGAAAGATTTTGTAGGTTACATTGGATAAAACCACTCTGGCACTCAA  99
      | || |  ||||||||||||| | |||||||||||| ||| |||||||||
seq2  ATCACATCGATTTTGTAGGTT-CCTTGGATAAAACCTCTCGGGCACTCAA  98

seq1  ATCAGAGATATAAAGTTGGGCAATTTCAGCTGTTGGTTGTTGATATTATC  149
      |||  | |||||||||||||||||||| |||| |||||||||||||||||
seq2  ATCCCACATATAAAGTTGGGCAATTTCTGCTGCTGGTTGTTGATATTATC  148

seq1  ATTCAGTGTATACTATGCCCTATTGATTTCAAAGCAGCTTTCACAAACTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTATACTATGCCCTATTGATTTCAAAGCAGCTTTCACAAACTG  198

seq1  CAGCAACCATATGGCTCCTTTAATGCTTTTGGATTCTACTGTTTCTTCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCATATGGCTCCTTTAATGCTTTTGGATTCTACTGTTTCTTCAA  248

seq1  GAGTTTTAAGAAAGCAATATTAAAATTTTAATTAGTATTCATTCTGCCCT  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGTTTTAAGAAAGCAATATTAAAATTTTAATTAGAATTCATTCTGCCCT  298

seq1  TTAATACCTTGTGGGTACAAACAAATCAAGGTACCAGCTCATTATGCCAA  349
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAATACCTTGTGGGTACAAACAAATCAAGGTACCAGCTCATTATGCCTA  348

seq1  TTGTAATAATGTAAACCTGAGCACTGTCGTGTTGAAACGCACTGTTACTT  399
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAATGTAAACCTGAGCACTGTCGTGTTGAAACGCACTGTTACTT  398

seq1  GAAACTCTTATCTTTTCCCTAAGCAGGCTACTTCACGCTCACAACTGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTTATCTTTTCCCTAAGCAGGCTACTTCACGCTCACAACTGGAG  448

seq1  TTTATTTCTTCAGGTTTCTTGGCAGGCTGCTTATTCAATCATAGGTCTAG  499
      |||||||||||||||||||||||| ||||||||||||||| |||||||| 
seq2  TTTATTTCTTCAGGTTTCTTGGCATGCTGCTTATTCAATCCTAGGTCTAA  498

seq1  AAACTTTCACTGTTGTTCCTAGCATCAAAAGGGAAAATGAGAACTATCAA  549
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCGCTGATGTTCCTAGCATCAAAAGGGAAAATGAGAACTATCAA  548

seq1  ACACATAATAAACTAGGATTTTTTTTTTTCCTAAGCTAGTCACTTTCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATAAACTAGGATTTTTTTTTTTCCTAAGCTAGTCACTTTCTAC  598

seq1  TCTTGCTGTGAGCTAACTTTACAAGTTGCTTTATTTTGATTGCACCAGCT  649
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TCTTGCTGTGAGCTAACTTTA-GAGTTGCTTTATTTTGATTGCACCAGCT  647

seq1  GGGATTGCAGGGGGTCATGTTAACTGTGGCAAGGACATCACATGGAGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCAGGGGGTCATGTTAACTGTGGCAAGGACATCACATGGAGAGA  697

seq1  GTGTGTGGTTCTAGTTTTGTTTCAGAGAACAGGTGCCCACATAACAAATA  749
      |||||||| |||||||||||||||||||||| |||||||||| |||||||
seq2  GTGTGTGGCTCTAGTTTTGTTTCAGAGAACATGTGCCCACATGACAAATA  747

seq1  CAGCTACCCAGACGGCCACTTGTCAATTTTGATAGAGCTCTCAGAAGTGA  799
      ||||||||||||||| |||||||||||| ||||||||||| || | ||||
seq2  CAGCTACCCAGACGGTCACTTGTCAATTCTGATAGAGCTCACAAATGTGA  797

seq1  GAGAGGAAAGACTCAGGTTCTGTATTCCTTCGGATTAACACTGAGAGGAG  849
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  GAGAGGAAAGACTCAGGTTCTGT-TTCCTCCGGATTAACACTGAGAGGAG  846

seq1  GAGGGGTGGGGAAACTATAACATTAGAGTCTCTTAGTTCTGTCCTGGTTA  899
      ||||||||||||||||| ||||||| |||||| ||| ||    |||   |
seq2  GAGGGGTGGGGAAACTAGAACATTATAGTCTC-TAG-TCACAACTGAGAA  894

seq1  GAGCCTGCTGTTAGAAGAATGAATATAGAGGAGAACCACTGTGAACAACT  949
      ||||| |||| |||||  |||||| || ||||||||||| | ||| ||||
seq2  GAGCCCGCTGCTAGAATCATGAATCTACAGGAGAACCACAG-GAAGAACT  943

seq1  ATACCATTGTTAAAATAACCTATTTCTAGTTTCCAGAACTGTCAATGTGG  999
        ||| ||| | ||  | ||| | | ||||  ||| | | |||||||   
seq2  TGACCTTTGATTAATCACCCTGTCTTTAGTGACCAAATCCGTCAATGACA  993

seq1  CATTTTTTCAT  1010
      |||||||||||
seq2  CATTTTTTCAT  1004

seq1: chr1_130026782_130027612
seq2: B6Ng01-179C03.g_89_918 (reverse)

seq1  GGCTACATGTGTATATTAGAATGCAT-ATGGCTTACAGAAATTAGTACAA  49
      || |||| |||||||||||||||||| |||||||||||||||||||||||
seq2  GGTTACAGGTGTATATTAGAATGCATAATGGCTTACAGAAATTAGTACAA  50

seq1  TATTATTTTCACAAATTATGTTTGTATCTTGAAAGGCATGCTAAGTGAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCACAAATTATGTTTGTATCTTGAAAGGCATGCTAAGTGAAA  100

seq1  TGATGGTTACAAAAGACCAAATACTTGTAATCATCCCAGGGATATGCTAT  149
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TGATGGTTACAAAAG-CCAAATACTTGTAATCATCCCAGGGAT-TGCTAT  148

seq1  ATCTGAGGTCATTTGTAAATCTCTGCGTATGAGAACATGATTGAGAGCCG  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGTCATTGGTAAATCTCTGCGTATGAGAACATGATTGAGAGCCG  198

seq1  TAGGTTCCGACTTACTTAGAAAATATTTTACTTTTATAAAATAAAAAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCCGACTTACTTAGAAAATATTTTACTTTTATAAAATAAAAAAGA  248

seq1  TTGTTATTTTGAAACAGTGTATTAGAATTCAGATTTTTAAAAACAGTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTTGAAACAGTGTATTAGAATTCAGATTTTTAAAAACAGTAAA  298

seq1  ATTCTACTATATCTTGAAATTTCAACATCTACCTATATACCACATCATGT  349
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  ATTCTACTATATCTTGAAATTTCAACATCCACTTATATACCACATCATGT  348

seq1  TATTCTAGTGTATTAGCTATATATTTTACCCTTTTTTGCAAAGAAGGGCA  399
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGCGTATTAGCTATATATTTTACCCTTTTTTGCAAAGAAGGGCA  398

seq1  TTTTTTAATGATTAAAAATGATAAAACACAGACTGAGGCCTAAGACCATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGATTAAAAATGATAAAACACAGACTGAGGCCTAAGACCATA  448

seq1  CACCACCTGCTATCCCCAGTGTCTTTCAAAACCCTGCTTGACTCTAATGA  499
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACCACCTGCTATCCCCAGTGTATTTCAAAACCCTGCTTGACTCTAATGA  498

seq1  CAGATCCAGAACAGGGAGTTTGGGTGTGTGCTGCTTGGTTCACATGTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGATCCAGAACAGGGAGTTTGGGTGTGTGCTGCTTGGTTCACATGTTTA  548

seq1  TTAGGGGTAATTAGCAATAAAAAGATTGTCAAAGAAGTAGTTGTTTGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGTAATTAGCAATAAAAAGATTGTCAAAGAAGTAGTTGTTTGTTG  598

seq1  CTAGCTTACTTTTGTCTCTTTGTCTAATTTGAAGGGTATTTACTCTTTTT  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTATTTTTGTCTCTTTGTCTAATTTGAAGGGTATTTACTCTTTTT  648

seq1  CTTTTTTTTTTTTTTAGTGGTTATCCTCTTTTACCATATATAGCTAATAA  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTTTTTAGTGGTTATCCTCTTTTACCATATATAGCTAATAA  698

seq1  AGATACATTTCTTACAGCTGTACTCTCCTTTTCATGCAAATACTATCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATTTCTTACAGCTGTACTCTCCTTTTCATGCAAATACTATCATG  748

seq1  AAACTCAGAGCTCCTATAGCTGACCATTCTTCCTTTGTTCGTTTAATTGT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACTCAGAGCTCCTATAGCTGACCATTCTTCCTTGGTTCGTTTAATTGT  798

seq1  ATGCAAAAGAAATTCATAATGTCTTAACACAG  831
      |||||||||||||||||||||| |||||||||
seq2  ATGCAAAAGAAATTCATAATGTATTAACACAG  830