BAC Information

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BAC

Clone NameB6Ng01-179C08
Chromosome1 (Build37)
Map Location 114,784,442 - 114,939,953
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179C08.bB6Ng01-179C08.g
ACCGA005948GA005949
length1,2001,175
definitionB6Ng01-179C08.b B6Ng01-179C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,784,442 - 114,785,629)(114,938,778 - 114,939,953)
sequence
gaattccaggtacgctttcagtcttttgggtcagttgttctgcatgccac
acagctcccagaaggtctttagactgtgttgtctgttgcacagttgccct
gtgtaaagaggagctcttgaatgctgtcaagctgtggtgtcttcgtggaa
gcaaacaagctagtgatatgctgctgttgccttgtgtgtagcagatttcc
tgggatgccagttgccttgtttgcagccgatcttcttggatgtctcaggt
tgtacactcagttgctctgagtgcagtggatcttctgggctggctcagga
tatggtgtctccagtggacagactcgctaacagtctgtcccagcagaaag
aacagtgaagaaagggcaaaattttactcttaatgtatagaattggaaga
aaaaaatgacatttagcttttaaaagatgcccttttgacagttattaata
caaatgcaaaataagacccccaaataccattttaataatagtttacatag
agcagcaatttattctgaaatgttcatttagtttgggataaatctcatgt
ttcaataataaaagagcagccatctcatttcaaattccatgatatataac
agttatagcacagcaaaaattctacctccttttgataaaatatagttcac
ataaaatagttaaattcaatgctttacaattacacagatttgagtacaaa
attgtgtgagttgttacactgtagctatgtctatgcacaccaggtgatca
tagcgtcattaatcattacttctgaaattgaaccatcagattcattcatg
cagcaaagcaaagcaggttgggtaaatatattcattggaaaccacattac
tgtgaatttcacagccacatgattaattatgacattagattgattcacaa
ggactaatttttttttgcataaataccaatttctccctgaagtaaattta
tttgataatctaaaaatggttgatagcagcaatacatcatatagtttctt
atctgtattgtcattttaagacaggcataattatacacaatggaaatgga
ttgttacaaaaatacatgtaaaaacacactgtataaatataactggcttt
aaccatttttccttacctaaccaggagttgttctcccaaaaatgaaccca
gtgtagaacaaggtatctaccaaatatggtaccagaccattagcccctct


gaattctttatcttctctaattctcagattgtagtgcattataatgctaa
tggtttgctctagatttttctcatccatactatgagaagcttttatatgt
ggaactgaatagctaaattctctttccatggaagaaagtgtccctgcttc
acaaatctggattatttaaaatatcattgtttgaaaggcttagctttata
tatcacagcaattcattcattttcaaacatttatgcctgaggtagaagaa
ttataatttacaatactgtttgtaatttaaaatacattaaacccaaattc
taataaccttgtaattgaaatacatgctcttcaaaaaatgtagtatataa
ataagccataatattgctatatgactccaatacaaattcagaaatgatgg
ttattatgcttatttttagtttctggaattgcgtgaaatatacaatgttt
atgcttttcataactgtgataaaccaccttgaccaaaagaaactttgatg
aggaaatacttgcaaatccagatcacagtgcaagactgaatgcagccagg
gtagaagtttgggtagaaaggaggaacactttttgctgacttgtttgtac
aagttcatttattttttcctatgtagtgaaggaccacctactcagcaatg
gttctacttacagtaggctgtgtctttctgaatcagttaacaatcaaggc
aatcctcacatacaggctcacagtccaatccgatctgggtgatctcttga
tctgatctgggtcttcccaaatgactccagactgtgtcatgataaaaggg
aaacctaattaggataggggtcgtagttgattgacattttgcattcttct
gtattctccctgaaatggttagttcaatattttcagaaaattatcatatt
ttttcagttaaaactttatttccttcttcaaaaatttggaatattgctca
aggagaaaagagataagggatgatttctggtaacaggtaacggaaagaac
ctaggaccatataccaccttctactgaatagaaagcatacattcagaaca
tatcctcatgtagtggatgaaacccaaaaaaaccaaagtttcctgattac
cgaataggcagtaatatatctcttccaagtgagggttcttttgaccagac
tcagttactctacagtgctcaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114784442_114785629
seq2: B6Ng01-179C08.b_44_1243

seq1  GAATTCCAGGTACGCTTTCAGTCTTTTGGGTCAGTTGTTCTGCATGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTACGCTTTCAGTCTTTTGGGTCAGTTGTTCTGCATGCCAC  50

seq1  ACAGCTCCCAGAAGGTCTTTAGACTGTGTTGTCTGTTGCACAGTTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCCAGAAGGTCTTTAGACTGTGTTGTCTGTTGCACAGTTGCCCT  100

seq1  GTGTAAAGAGGAGCTCTTGAATGCTGTCAAGCTGTGGTGTCTTCGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGAGGAGCTCTTGAATGCTGTCAAGCTGTGGTGTCTTCGTGGAA  150

seq1  GCAAACAAGCTAGTGATATGCTGCTGTTGCCTTGTGTGTAGCAGATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGCTAGTGATATGCTGCTGTTGCCTTGTGTGTAGCAGATTTCC  200

seq1  TGGGATGCCAGTTGCCTTGTTTGCAGCCGATCTTCTTGGATGTCTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCCAGTTGCCTTGTTTGCAGCCGATCTTCTTGGATGTCTCAGGT  250

seq1  TGTACACTCAGTTGCTCTGAGTGCAGTGGATCTTCTGGGCTGGCTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTCAGTTGCTCTGAGTGCAGTGGATCTTCTGGGCTGGCTCAGGA  300

seq1  TATGGTGTCTCCAGTGGACAGACTCGCTAACAGTCTGTCCCAGCAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTCTCCAGTGGACAGACTCGCTAACAGTCTGTCCCAGCAGAAAG  350

seq1  AACAGTGAAGAAAGGGCAAAATTTTACTCTTAATGTATAGAATTGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGAAGAAAGGGCAAAATTTTACTCTTAATGTATAGAATTGGAAGA  400

seq1  AAAAAATGACATTTAGCTTTTAAAAGATGCCCTTTTGACAGTTATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGACATTTAGCTTTTAAAAGATGCCCTTTTGACAGTTATTAATA  450

seq1  CAAATGCAAAATAAGACCCCCAAATACCATTTTAATAATAGTTTACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAAAATAAGACCCCCAAATACCATTTTAATAATAGTTTACATAG  500

seq1  AGCAGCAATTTATTCTGAAATGTTCATTTAGTTTGGGATAAATCTCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATTTATTCTGAAATGTTCATTTAGTTTGGGATAAATCTCATGT  550

seq1  TTCAATAATAAAAGAGCAGCCATCTCATTTCAAATTCCATGATATATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAATAAAAGAGCAGCCATCTCATTTCAAATTCCATGATATATAAC  600

seq1  AGTTATAGCACAGCAAAAATTCTACCTCCTTTTGATAAAATATAGTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGCACAGCAAAAATTCTACCTCCTTTTGATAAAATATAGTTCAC  650

seq1  ATAAAATAGTTAAATTCAATGCTTTACAATTACACAGATTTGAGTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGTTAAATTCAATGCTTTACAATTACACAGATTTGAGTACAAA  700

seq1  ATTGTGTGAGTTGTTACACTGTAGCTATGTCTATGCACACCAGGTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGAGTTGTTACACTGTAGCTATGTCTATGCACACCAGGTGATCA  750

seq1  TAGCGTCATTAATCATTACTTCTGAAATTGAACCATCAGATTCATTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTCATTAATCATTACTTCTGAAATTGAACCATCAGATTCATTCATG  800

seq1  CAGCAAAGCAAAGCAGGTTGGGTAAATATATTCATTGGAAACCACATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGCAAAGCAGGTTGGGTAAATATATTCATTGGAAACCACATTAC  850

seq1  TGTGAATTTCACAGCCACATGATTAATTATGACATTAGATTGATTCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTCACAGCCACATGATTAATTATGACATTAGATTGATTCACAA  900

seq1  GGACTAA-TTTTTTTTGCATAAATACCAATTTCTCCCTGAAGTAAATTTA  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATTTTTTTTTGCATAAATACCAATTTCTCCCTGAAGTAAATTTA  950

seq1  TTTGATAATCTAAAAATGGTTGATAGCAGCAATACATCATATAGTTTC-T  998
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGATAATCTAAAAATGGTTGATAGCAGCAATACATCATATAGTTTCTT  1000

seq1  ATCTGTATTGTCATTTTAAGACAGGCAATAATTATACAACAATGG-AATG  1047
      |||||||||||||||||||||||||| |||||||||| ||||||| ||||
seq2  ATCTGTATTGTCATTTTAAGACAGGC-ATAATTATAC-ACAATGGAAATG  1048

seq1  GA-TGTTAC-AAAATACATGT-AAAACACACTGTATAAATATACTTGGC-  1093
      || |||||| ||||||||||| |||||||||||||||||||||  |||| 
seq2  GATTGTTACAAAAATACATGTAAAAACACACTGTATAAATATAACTGGCT  1098

seq1  TTAACCATTTTTCC-TACCTAA-CAGGAGT--GTCTCCC-AAAATGA--C  1136
      |||||||||||||| ||||||| |||||||   |||||| |||||||  |
seq2  TTAACCATTTTTCCTTACCTAACCAGGAGTTGTTCTCCCAAAAATGAACC  1148

seq1  CAGTG-AGGACAAAGTGTACTACCAAATATGGTTACCAGAACA-TAACCC  1184
      ||||| || |||| || | ||||||||||||| ||||||| || || |||
seq2  CAGTGTAGAACAAGGTAT-CTACCAAATATGG-TACCAGACCATTAGCCC  1196

seq1  CTCT  1188
      ||||
seq2  CTCT  1200


seq1: chr1_114938778_114939953
seq2: B6Ng01-179C08.g_65_1239 (reverse)

seq1  CCATAGAGCAACTGTAGAGTAACTGAGACTGGTTCAAAGAAACATCACTT  50
      |||| |||| ||||||||||||||||| |||||  |||||| | ||||||
seq2  CCATTGAGC-ACTGTAGAGTAACTGAGTCTGGTCAAAAGAACCCTCACTT  49

seq1  GGGA-AGAGATATTACTGCCTA-TCGGTAATCAGG-AACTTT-GTGTTTT  96
      || | ||| ||||||||||||| |||||||||||| |||||| || ||||
seq2  GGAAGAGATATATTACTGCCTATTCGGTAATCAGGAAACTTTGGTTTTTT  99

seq1  TTGGTTTCATCCACCTACATGAAGGATATG-TCTGAATGTATGCTTTCTA  145
      | ||||||||||| ||||||| |||||||| |||||||||||||||||||
seq2  TGGGTTTCATCCA-CTACATG-AGGATATGTTCTGAATGTATGCTTTCTA  147

seq1  TTCAGTAGAAGGTGGTATATGGTCCTAGG-TCTTTCCGTTACCTGTTACC  194
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCAGTAGAAGGTGGTATATGGTCCTAGGTTCTTTCCGTTACCTGTTACC  197

seq1  AGAAATTCATCCCTTATCTTCTTTTTCTTCCTTGAGCAATATTCCAAATT  244
      ||||| |||||||||||| ||||||   ||||||||||||||||||||||
seq2  AGAAA-TCATCCCTTATC-TCTTTT--CTCCTTGAGCAATATTCCAAATT  243

seq1  TTTGAAGAAGGAAATAAAGTTTTAACTGAAAAAATATGATAATTTTCTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAGGAAATAAAGTTTTAACTGAAAAAATATGATAATTTTCTGA  293

seq1  AAATATTGAACTAACCATTTCAGGGAGAATACAGAAGAATGCAAAATGTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAACTAACCATTTCAGGGAGAATACAGAAGAATGCAAAATGTC  343

seq1  AATCAACTACGACCCCTATCCTAATTAGGTTTCCCTTTTATCATGACACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTACGACCCCTATCCTAATTAGGTTTCCCTTTTATCATGACACA  393

seq1  GTCTGGAGTCATTTGGGAAGACCCAGATCAGATCAAGAGATCACCCAGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGTCATTTGGGAAGACCCAGATCAGATCAAGAGATCACCCAGAT  443

seq1  CGGATTGGACTGTGAGCCTGTATGTGAGGATTGCCTTGATTGTTAACTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTGGACTGTGAGCCTGTATGTGAGGATTGCCTTGATTGTTAACTGA  493

seq1  TTCAGAAAGACACAGCCTACTGTAAGTAGAACCATTGCTGAGTAGGTGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGACACAGCCTACTGTAAGTAGAACCATTGCTGAGTAGGTGGT  543

seq1  CCTTCACTACATAGGAAAAAATAAATGAACTTGTACAAACAAGTCAGCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTACATAGGAAAAAATAAATGAACTTGTACAAACAAGTCAGCAA  593

seq1  AAAGTGTTCCTCCTTTCTACCCAAACTTCTACCCTGGCTGCATTCAGTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTCCTCCTTTCTACCCAAACTTCTACCCTGGCTGCATTCAGTCT  643

seq1  TGCACTGTGATCTGGATTTGCAAGTATTTCCTCATCAAAGTTTCTTTTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGATCTGGATTTGCAAGTATTTCCTCATCAAAGTTTCTTTTGG  693

seq1  TCAAGGTGGTTTATCACAGTTATGAAAAGCATAAACATTGTATATTTCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGTTTATCACAGTTATGAAAAGCATAAACATTGTATATTTCAC  743

seq1  GCAATTCCAGAAACTAAAAATAAGCATAATAACCATCATTTCTGAATTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCCAGAAACTAAAAATAAGCATAATAACCATCATTTCTGAATTTG  793

seq1  TATTGGAGTCATATAGCAATATTATGGCTTATTTATATACTACATTTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGTCATATAGCAATATTATGGCTTATTTATATACTACATTTTTT  843

seq1  GAAGAGCATGTATTTCAATTACAAGGTTATTAGAATTTGGGTTTAATGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCATGTATTTCAATTACAAGGTTATTAGAATTTGGGTTTAATGTA  893

seq1  TTTTAAATTACAAACAGTATTGTAAATTATAATTCTTCTACCTCATGCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTAAATTACAAACAGTATTGTAAATTATAATTCTTCTACCTCAGGCAT  943

seq1  AAATGTTTGAAAATGAATGAATTGCTGTGATATATAAAGCTAAGCCTTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGAAAATGAATGAATTGCTGTGATATATAAAGCTAAGCCTTTC  993

seq1  AAACAATGATATTTTAAATAATCCAGATTTGTGAAGCAGGGACACTTTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGATATTTTAAATAATCCAGATTTGTGAAGCAGGGACACTTTCT  1043

seq1  TCCATGGAAAGAGAATTTAGCTATTCAGTTCCACATATAAAAGCTTCTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAAAGAGAATTTAGCTATTCAGTTCCACATATAAAAGCTTCTCA  1093

seq1  TAGTATGGATGAGAAAAATCTAGAGCAAACCATTAGCATTATAATGCACT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGGATGAGAAAAATCTAGAGCAAACCATTAGCATTATAATGCACT  1143

seq1  ACAATCTGAGAATTAGAGAAGATAAAGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  ACAATCTGAGAATTAGAGAAGATAAAGAATTC  1175


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