BAC Information

Click to search

BAC

Clone NameB6Ng01-179G05
Chromosome1 (Build37)
Map Location 21,632,548 - 21,784,244
singlet/doubletdoublet
Overlap geneKcnq5
Upstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179G05.bB6Ng01-179G05.g
ACCGA006122GA006123
length1,2021,037
definitionB6Ng01-179G05.b B6Ng01-179G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,632,548 - 21,633,760)(21,783,209 - 21,784,244)
sequence
gaattcattcaaattctgcagtacactggcaaggtcaataccaccctgta
tcatccatgtcctttcaaaagcaacaggtcagtacttttgaaagatggtt
gaaccacatggtttttttttttttttgtggaataaaagtttaatgttgca
ttttctagataaaatacaatatcgttgtagatgtgcataaacaaaaacat
ctttaaacagagatgccctagcagacaatgggaccacatgtttaatttta
aaaaagcaccatgggaaaaataacaaaccctaacagtgtaggctctattt
caatattatgttatgttgattttaatgtaaatttttctcattaatcattg
gtatgagtttgtaagaataaaatgtttttctgatctacatatctgccctc
tgagcagctctatctatgtgatctgatgctggctcaaacttgtgatcctt
ctgcctcaactttttaaaagttaagaaaaaaaaaatatatatatatatat
atacatatatacatacatataggcttgtgcctcactcttctgagcagttt
aactttgtaaattgaagtaatctctaatagttacctaatcagtacatgag
gtaggaagtgacaggttgaatgttcaaaatgcttatttctaattattcaa
taatatatagttttttatgatcagccaaatacgtcagcacacttgcaggc
agcagccattccttgacacctacgacccttagcagcggcagggttctcac
acaagctgaaaagacctgtatttctatttggaaggctcacttatactttt
gaggcttgagcttgggttgtcgaatttctcctaaacaatttgaaaagtta
gaaagcgattatcagtctgaaagaaagactttctctgcaactgaaattac
gggttctttaactgtttatctgtcatcttttaaaaatatttttttatctg
ggaaatatatttttaagcttatttcagcgtctctctgacatctacagaag
ctgaggtgtcacagatgatttgccttggagtttttagactatcatgaaat
actgatgacatctcattacatacgagtagtcattgaatttccacattaca
caatttattagaggtacaccgaatggctttgattatagttattgttacct
aaaggattactttaattatttggacatggtatatacttgaaatgggtgaa
aa
gaattcatttccctcaaatctagcttagtgaataaataagcctagccatg
tttcttacaagaacatcagtaactggagcagatacatcactgaaaaggcc
atcacagcaccataggacctcattaaagccccatccctggagctcagcat
acaacttgcaggcagctctctcaaagagtctcctctccctaagtagttga
ctgattttgtaaagtcagccaatggcttcacaaggcttgaacttttcatg
gactttcttctttgtcttccttgaagcacaattctggggtcagatgtatg
caaaacatcacaacttgcctggggggtcatgtcaagcagatgtccagcca
cagcccaactcagaaatggtgagctgatacagtgatgatgctccataaca
tagaaatcattgagtctcctagtctctgctacttagtattttcacatgtg
ttgatgagacaaactaactgctgtctgcggcttttatcaacagcaaccct
atagaagtgatacctatgatgagaatagttgagcagtggaaacctgctct
agacagtaggctgttgggattgcaaaatattccaagtcaaggcgagttca
agtttaaagatctacagtccaagagaataaggactcagaggctagtgatg
agaatatggtattcagaatgtgtaggacagtaaaggatactcggactatt
aaataattcagactttaaactgaggatattgacattcccgcagaagatgt
ggcaggagacacagggaacaatgcatgtgcttactggcagcagaggggag
ggttggctggggcagggtagaattgaaagatcttgtcagtggcattcaat
aacagagaaagtgaagagagatggaacaagtttcaaaggcttgttagcat
gtgttaaggaaaagtgttggagcccattttcatatgcaacttcaggtgac
cagtatatacttcaaacatagttagttgtctttgggaaaaaaaaaatagg
aagataacctcttaaaggttgattgttcttttcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_21632548_21633760
seq2: B6Ng01-179G05.b_51_1252

seq1  GAATTCATTCAAATTCTGCAGTACACTGGCAAGGTCAATACCACCCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAAATTCTGCAGTACACTGGCAAGGTCAATACCACCCTGTA  50

seq1  TCATCCATGTCCTTTCAAAAGCAACAGGTCAGTACTTTTGAAAGATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATGTCCTTTCAAAAGCAACAGGTCAGTACTTTTGAAAGATGGTT  100

seq1  GAACCACATGGTTTTTTTTTTTTTTTGTGGAATAAAAGTTTAATGTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACATGGTTTTTTTTTTTTTTTGTGGAATAAAAGTTTAATGTTGCA  150

seq1  TTTTCTAGATAAAATACAATATCGTTGTAGATGTGCATAAACAAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGATAAAATACAATATCGTTGTAGATGTGCATAAACAAAAACAT  200

seq1  CTTTAAACAGAGATGCCCTAGCAGACAATGGGACCACATGTTTAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACAGAGATGCCCTAGCAGACAATGGGACCACATGTTTAATTTTA  250

seq1  AAAAAGCACCATGGGAAAAATAACAAACCCTAACAGTGTAGGCTCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACCATGGGAAAAATAACAAACCCTAACAGTGTAGGCTCTATTT  300

seq1  CAATATTATGTTATGTTGATTTTAATGTAAATTTTTCTCATTAATCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATGTTATGTTGATTTTAATGTAAATTTTTCTCATTAATCATTG  350

seq1  GTATGAGTTTGTAAGAATAAAATGTTTTTCTGATCTACATATCTGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTTTGTAAGAATAAAATGTTTTTCTGATCTACATATCTGCCCTC  400

seq1  TGAGCAGCTCTATCTATGTGATCTGATGCTGGCTCAAACTTGTGATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCTCTATCTATGTGATCTGATGCTGGCTCAAACTTGTGATCCTT  450

seq1  CTGCCTCAACTTTTTAAAAGTTAAGAAAAAAAAAATATATATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAACTTTTTAAAAGTTAAGAAAAAAAAAATATATATATATATAT  500

seq1  ATACATATATACATACATATAGGCTTGTGCCTCACTCTTCTGAGCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATACATACATATAGGCTTGTGCCTCACTCTTCTGAGCAGTTT  550

seq1  AACTTTGTAAATTGAAGTAATCTCTAATAGTTACCTAATCAGTACATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTAAATTGAAGTAATCTCTAATAGTTACCTAATCAGTACATGAG  600

seq1  GTAGGAAGTGACAGGTTGAATGTTCAAAATGCTTATTTCTAATTATTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGTGACAGGTTGAATGTTCAAAATGCTTATTTCTAATTATTCAA  650

seq1  TAATATATAGTTTTTTATGATCAGCCAAATACGTCAGCACACTTGCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATAGTTTTTTATGATCAGCCAAATACGTCAGCACACTTGCAGGC  700

seq1  AGCAGCCATTCCTTGACACCTACGACCCTTAGCAGCGGCAGGGTTCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCATTCCTTGACACCTACGACCCTTAGCAGCGGCAGGGTTCTCAC  750

seq1  ACAAGCTGAAAAGACCTGTATTTCTATTTGGAAGGCTCACTTATACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGAAAAGACCTGTATTTCTATTTGGAAGGCTCACTTATACTTTT  800

seq1  GAGGCTTGAGCTT-GGTTGTCGAATTTCTCCTAAACAATTTGAAAAGTTA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGAGCTTGGGTTGTCGAATTTCTCCTAAACAATTTGAAAAGTTA  850

seq1  GAAAGCGATTATCAGTCTGAAAGAAAGACTTTCTCTGCAACTGAAATTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGATTATCAGTCTGAAAGAAAGACTTTCTCTGCAACTGAAATTAC  900

seq1  GGGTTCTTTAACTGTTTTATCTGTCAATCTTTTAAAAATA-TTTTTTATC  948
      |||||||||||||| |||||||||| |||||||||||||| |||||||||
seq2  GGGTTCTTTAACTG-TTTATCTGTC-ATCTTTTAAAAATATTTTTTTATC  948

seq1  TGGGAAATATATTTTTAAGCTTATTTCAGGCGTCTCTCTGACATCTACAG  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGGAAATATATTTTTAAGCTTATTTCA-GCGTCTCTCTGACATCTACAG  997

seq1  -AGCTGAGGTGTCACAGATGATTTGCCTTTGAGTTTTTAGACTAATCATG  1047
       |||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AAGCTGAGGTGTCACAGATGATTTGCCTTGGAGTTTTTAGACT-ATCATG  1046

seq1  AAATACTTGATGAACATCTCATTACATACGAAGGTAGTCATTG-ATATCC  1096
      |||||| ||||| ||||||||||||||||||  |||||||||| || |||
seq2  AAATAC-TGATG-ACATCTCATTACATACGA--GTAGTCATTGAATTTCC  1092

seq1  ACATTAACACAATTTATAAAGAGTAACACCG-ATGGTTTTGATTTTAATA  1145
      ||||| |||||||||||  ||||  |||||| |||| |||||||   |||
seq2  ACATT-ACACAATTTAT-TAGAGGTACACCGAATGGCTTTGATT---ATA  1137

seq1  GTTTATGTTAACTAAAGGATAACTTTTATATTATTTTAAACTATGTAATA  1195
      |||  ||||| ||||||||| |||||   |||||||  |   |||  |||
seq2  GTTATTGTTACCTAAAGGATTACTTT--AATTATTTGGA--CATGGTATA  1183

seq1  CA-TTTAAATGGGTGAAAA  1213
       | || |||||||||||||
seq2  TACTTGAAATGGGTGAAAA  1202

seq1: chr1_21783209_21784244
seq2: B6Ng01-179G05.g_66_1102 (reverse)

seq1  AGAAG-AAAGA--CATCAA-CTTTAAGAAGTT-TCTTTCTATTTTTTTTT  45
      ||||| |||||   ||||| |||||||| ||| |||| ||||||||||||
seq2  AGAAGAAAAGAACAATCAACCTTTAAGAGGTTATCTTCCTATTTTTTTTT  50

seq1  TCCCAAAGGACAACTAACTATGTTTGGAGTATATACTTGGTCACCTGAAG  95
      ||||||| |||||||||||||||||| ||||||||| |||||||||||||
seq2  TCCCAAA-GACAACTAACTATGTTTGAAGTATATAC-TGGTCACCTGAAG  98

seq1  TTGCATATTGAAAATTGGGCTCCAACACTTCTTCCTT-ACACATTGCT-A  143
      ||||||| |||||| ||||||||||||||| |||||| ||||| |||| |
seq2  TTGCATA-TGAAAA-TGGGCTCCAACACTT-TTCCTTAACACA-TGCTAA  144

seq1  CATGCCTTTG-AACTTGTTCCATCTCTCTTCACTTTCTCTGTTATTGAAT  192
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTGAAACTTGTTCCATCTCTCTTCACTTTCTCTGTTATTGAAT  194

seq1  GCCACTGACAAGATCTTTCCAATTCTACCCTGCCCCAGCCAACCCTCCCC  242
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCACTGACAAGATCTTT-CAATTCTACCCTGCCCCAGCCAACCCTCCCC  243

seq1  TCTGCTGCCAGTAAGCACATGCATTGTTCCCTGTGTCTCCTGCCACATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCCAGTAAGCACATGCATTGTTCCCTGTGTCTCCTGCCACATCT  293

seq1  TCTGCGGGAATGTCAATATCCTCAGTTTAAAGTCTGAATTATTTAATAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGGAATGTCAATATCCTCAGTTTAAAGTCTGAATTATTTAATAGT  343

seq1  CCGAGTATCCTTTACTGTCCTACACATTCTGAATACCATATTCTCATCAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTATCCTTTACTGTCCTACACATTCTGAATACCATATTCTCATCAC  393

seq1  TAGCCTCTGAGTCCTTATTCTCTTGGACTGTAGATCTTTAAACTTGAACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTGAGTCCTTATTCTCTTGGACTGTAGATCTTTAAACTTGAACT  443

seq1  CGCCTTGACTTGGAATATTTTGCAATCCCAACAGCCTACTGTCTAGAGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGACTTGGAATATTTTGCAATCCCAACAGCCTACTGTCTAGAGCA  493

seq1  GGTTTCCACTGCTCAACTATTCTCATCATAGGTATCACTTCTATAGGGTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCACTGCTCAACTATTCTCATCATAGGTATCACTTCTATAGGGTT  543

seq1  GCTGTTGATAAAAGCCGCAGACAGCAGTTAGTTTGTCTCATCAACACATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGATAAAAGCCGCAGACAGCAGTTAGTTTGTCTCATCAACACATG  593

seq1  TGAAAATACTAAGTAGCAGAGACTAGGAGACTCAATGATTTCTATGTTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATACTAAGTAGCAGAGACTAGGAGACTCAATGATTTCTATGTTAT  643

seq1  GGAGCATCATCACTGTATCAGCTCACCATTTCTGAGTTGGGCTGTGGCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCATCACTGTATCAGCTCACCATTTCTGAGTTGGGCTGTGGCTG  693

seq1  GACATCTGCTTGACATGACCCCCCAGGCAAGTTGTGATGTTTTGCATACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGCTTGACATGACCCCCCAGGCAAGTTGTGATGTTTTGCATACA  743

seq1  TCTGACCCCAGAATTGTGCTTCAAGGAAGACAAAGAAGAAAGTCCATGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCCAGAATTGTGCTTCAAGGAAGACAAAGAAGAAAGTCCATGAA  793

seq1  AAGTTCAAGCCTTGTGAAGCCATTGGCTGACTTTACAAAATCAGTCAACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGCCTTGTGAAGCCATTGGCTGACTTTACAAAATCAGTCAACT  843

seq1  ACTTAGGGAGAGGAGACTCTTTGAGAGAGCTGCCTGCAAGTTGTATGCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGAGAGGAGACTCTTTGAGAGAGCTGCCTGCAAGTTGTATGCTG  893

seq1  AGCTCCAGGGATGGGGCTTTAATGAGGTCCTATGGTGCTGTGATGGCCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGGATGGGGCTTTAATGAGGTCCTATGGTGCTGTGATGGCCTT  943

seq1  TTCAGTGATGTATCTGCTCCAGTTACTGATGTTCTTGTAAGAAACATGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATGTATCTGCTCCAGTTACTGATGTTCTTGTAAGAAACATGGC  993

seq1  TAGGCTTATTTATTCACTAAGCTAGATTTGAGGGAAATGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTATTTATTCACTAAGCTAGATTTGAGGGAAATGAATTC  1037