BAC Information

Click to search

BAC

Clone NameB6Ng01-179H02
Chromosome1 (Build37)
Map Location 137,102,756 - 137,237,823
singlet/doubletdoublet
Overlap geneLOC100043064, Elf3, Rnpep, Timm17a, Lmod1
Upstream geneAdora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1
Downstream geneTmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H02.bB6Ng01-179H02.g
ACCGA006160GA006161
length1,0311,007
definitionB6Ng01-179H02.b B6Ng01-179H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,102,756 - 137,103,776)(137,236,788 - 137,237,823)
sequence
gaattcattatgtaggttggtcttgaactcagagacatttgattctgact
cgtgagtgctgagcttaaaggcgtgtgctatcaccccagctaatgtattt
attgagataaattcttactatgttcccagacagcccttgaactggtggat
ttaaatgatccctgtctcagcctacaaagtcctcccagtcctaccttagt
gcccagctgcagtgtaactcagaggcagagtgcatggggtcctgagtttt
atccccggcaacaaaacaaaatgaaacaaagttaaccggctcctgtccct
cttccccactgcaccctggagctgctaggatgcaagagggaaagaagccc
gtgaagggctggagagatggctcagtagttaagagttagacctgggttca
atccccagcatattcatagccctctgtagctccagttccagggatctgat
gccctcttctgatggcatgcatgtggtatgcatacatacatgtaggtaaa
acactcacagacataaaataaataaaagtagagaaagtgggagaaagaac
ggagctgggccggcatactagtgcccacacagagcttttctcagtgagaa
ggtgggcgtgagagaccagagagaaaggtaaagataggagataggccgac
aggctaaaggcatggcaagtgttgggtgggagacggcctgctgagacgaa
ccgaggagctcacatccgagcaggcgcagaaaaagccccaaatggccaaa
gtacggacaagaggtactgcgtttgcagattggcaaaagactctgctcgc
tatgaataaggagggtaccccgcagtcaggggtagcaaggcctggtacag
tgcacacagagaaagggtagaccaagtatttcgggtgcataccctactcc
cagcactcaggagacagaggcagtgagtcaccactcaaggccaacctagt
ctacaaagtcagttttaagatcagtcagtgataagtggcaggcctctgtc
ttctacaaatcccagatgaaggagcaggctc
gaattctttatgcagaccaggccggcctctaactcacagagattagcctg
cctctgctgagattaaagacgtgtgccacataaaccaggcatggcgagac
acacctttagtaccacactggggaggcagaggcaggtgggtctctaagtt
ctaggacacccagggatgcagagtaaaaacactgttgtgaaaaaacacaa
acaaacaaacaaacaaaggagacatgtgccaccatgcctggctcacactg
ctctttaaagcaggactgtgggacctggggatgtatctgaagacttcagc
ctgacccccttgaccacagaaacagctgcatctccagtattttatggtca
ctaccaaaatccttcctcgattctgagattaagttaagcttagctgtggc
agaggacaggggacaggtgtgtcatccatcgctcagtggcagacatgctc
ccattgggataggtgagatgacccattttcagaaaatgtagtagaagcaa
aatgacctaatgccagcctttggtagatggaattctagcaggaaatacca
atcattaattcctcaaagcatccattataaataatgaatcaatttccgtc
ttatggactgagaacagggttggctgccctgcatctttgtgagagatatg
ttgaaatgagcttcctaaattcatgtgttagagactcggtccccgcctgg
ggtggtggcacacgccttttaatcccagcaggcagatttctgagttcgag
gccagccctcgtctacaaagtgagttccaggacagccagggctacacaga
gaaaccctgtctcaaaaaaacttaaaaaaccaaaacatcaaacaaaacca
aaaacaaaactaaaacaaaaaagaaagaaagaaactcggtccccagtctt
gctggtgttggagggtgggagtcaccacgagcccatattgggtcttggca
ggcactgaattggaattattggctcctgtggccacttggcggccgtcaca
gcagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_137102756_137103776
seq2: B6Ng01-179H02.b_41_1067

seq1  GAATTCATTATGTAGGTTGGTCTTGAACTCAGAGAGATCTGCTTCTGACT  50
      ||||||||||||||||||||||||||||||||||| || || ||||||||
seq2  GAATTCATTATGTAGGTTGGTCTTGAACTCAGAGACATTTGATTCTGACT  50

seq1  CGTGAGTGCTGAGCTTAAAGGCGTGTGCTATCACCCCAGCTAATGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTGCTGAGCTTAAAGGCGTGTGCTATCACCCCAGCTAATGTATTT  100

seq1  ATTGAGATAAATTCTTACTATGTTCCCAGACAGCCCTTGAACTGGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATAAATTCTTACTATGTTCCCAGACAGCCCTTGAACTGGTGGAT  150

seq1  TTAAATGATCCCTGTCTCAGCCTACAAAGTCCTCCCAGTCCTACCTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATCCCTGTCTCAGCCTACAAAGTCCTCCCAGTCCTACCTTAGT  200

seq1  GCCCAGCTGCAGTGTAACTCAGAGGCAGAGTGCATGGGGTCCTGAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTGCAGTGTAACTCAGAGGCAGAGTGCATGGGGTCCTGAGTTTT  250

seq1  ATCCCCGGCAACAAAACAAAATGAAACAAAGTTAACCGGCTCCTGTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGGCAACAAAACAAAATGAAACAAAGTTAACCGGCTCCTGTCCCT  300

seq1  CTTCCCCACTGCACCCTGGAGCTGCTAGGATGCAAGAGGGAAAGAAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCACTGCACCCTGGAGCTGCTAGGATGCAAGAGGGAAAGAAGCCC  350

seq1  GTGAAGGGCTGGAGAGATGGCTCAGTAGTTAAGAGTTAGACCTGGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGCTGGAGAGATGGCTCAGTAGTTAAGAGTTAGACCTGGGTTCA  400

seq1  ATCCCCAGCATATTCATAGCCCTCTGTAGCTCCAGTTCCAGGGATCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCATATTCATAGCCCTCTGTAGCTCCAGTTCCAGGGATCTGAT  450

seq1  GCCCTCTTCTGATGGCATGCATGTGGTATGCATACATACATGTAGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCTGATGGCATGCATGTGGTATGCATACATACATGTAGGTAAA  500

seq1  ACACTCACAGACATAAAATAAATAAAAGTAGAGAAAGTGGGAGAAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACAGACATAAAATAAATAAAAGTAGAGAAAGTGGGAGAAAGAAC  550

seq1  GGAGCTGGGCCGGCATACTAGTGCCCACACAGAGCTTTTCTCAGTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGCCGGCATACTAGTGCCCACACAGAGCTTTTCTCAGTGAGAA  600

seq1  GGTGGGCGTGAGAGACCAGAGAGAAAGGTAAAGATAGGAGATAGGCCGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCGTGAGAGACCAGAGAGAAAGGTAAAGATAGGAGATAGGCCGAC  650

seq1  AGGCTAAAGGCATGGCAAGTGTTGGGTGGGAGACGGCCTGCTGAGACGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAGGCATGGCAAGTGTTGGGTGGGAGACGGCCTGCTGAGACGAA  700

seq1  CCGAGGAGCTCACATCCGAGCAGGCGCAGAAAAAGCCCCAAATGGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAGCTCACATCCGAGCAGGCGCAGAAAAAGCCCCAAATGGCCAAA  750

seq1  GTACGGACAAGAGGTACTGCGTTTGCAGATTGGCAAAAGACTCTGCTCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGACAAGAGGTACTGCGTTTGCAGATTGGCAAAAGACTCTGCTCGC  800

seq1  TATGAATAAGGAGGGTACCCCGCAGTCAGGGGTAGCAAGGCCTGGTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAAGGAGGGTACCCCGCAGTCAGGGGTAGCAAGGCCTGGTACAG  850

seq1  TGCACACAGAGAAA-GGTAGACCAAGTATTTC-GGTGCATACCCTACTCC  898
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TGCACACAGAGAAAGGGTAGACCAAGTATTTCGGGTGCATACCCTACTCC  900

seq1  CAGCACTCAGGAGACAGAGGCAGTGAGTCACCACTCAAGGCCAACCTAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCAGGAGACAGAGGCAGTGAGTCACCACTCAAGGCCAACCTAGT  950

seq1  CTACAAAGTCAGTTTT-AGATCAGTCAGTGATAAGTGGCAGGCCTCTGTC  997
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTACAAAGTCAGTTTTAAGATCAGTCAGTGATAAGTGGCAGGCCTCTGTC  1000

seq1  -TCTACAAA-CCCAGA-GAAGGAGCAG  1021
       |||||||| |||||| ||||||||||
seq2  TTCTACAAATCCCAGATGAAGGAGCAG  1027

seq1: chr1_137236788_137237823
seq2: B6Ng01-179H02.g_66_1072 (reverse)

seq1  GCACTGCTGCCGCCACCGCCACTGCTGTGCTGGCCACCGCCACTGCTGTG  50
                                              ||||||||||
seq2  ---------------------------------------GCACTGCTGTG  11

seq1  -CTGCCGC--AGTGGCCACAGGAG-CATTAAT--CCATTCAGTGCCT-CC  93
       | |||||  |||||||||||||| || ||||  | ||||||||||| ||
seq2  ACGGCCGCCAAGTGGCCACAGGAGCCAATAATTCCAATTCAGTGCCTGCC  61

seq1  AAGACCCAATAT-GGCTCGT-GTGACT-CCACCCTCCAACACCAGC-AGA  139
      |||||||||||| ||||||| |||||| |||||||||||||||||| |||
seq2  AAGACCCAATATGGGCTCGTGGTGACTCCCACCCTCCAACACCAGCAAGA  111

seq1  CTGGGGACCGAGTTTCTTTCTTTCTTTTTTTGTTTTTGTTTTTGTTTTTT  189
      |||||||||||||||||||||||| ||||||||||| | |||||||||| 
seq2  CTGGGGACCGAGTTTCTTTCTTTC-TTTTTTGTTTTAG-TTTTGTTTTTG  159

seq1  GTTTTTGTTTTGGTGTTTTGGTTTTTT-AGTTTTTTTGAGACAGGGTTTC  238
      |||||   |||| |||||||||||||| ||||||||||||||||||||||
seq2  GTTTT--GTTTGATGTTTTGGTTTTTTAAGTTTTTTTGAGACAGGGTTTC  207

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACGA-GGCTGGC  287
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACGAGGGCTGGC  257

seq1  CTCGAACTCAGAAATCTGCCTGCTGGGATT-AAAGGCGTGTGCCACCACC  336
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCGAACTCAGAAATCTGCCTGCTGGGATTAAAAGGCGTGTGCCACCACC  307

seq1  CCAGGCGGGGACCGAGTCTCTAACACATGAATTTAGGAAGCTCATTTCAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGGGGACCGAGTCTCTAACACATGAATTTAGGAAGCTCATTTCAA  357

seq1  CATATCTCTCACAAAGATGCAGGGCAGCCAACCCTGTTCTCAGTCCATAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCTCACAAAGATGCAGGGCAGCCAACCCTGTTCTCAGTCCATAA  407

seq1  GACGGAAATTGATTCATTATTTATAATGGATGCTTTGAGGAATTAATGAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAAATTGATTCATTATTTATAATGGATGCTTTGAGGAATTAATGAT  457

seq1  TGGTATTTCCTGCTAGAATTCCATCTACCAAAGGCTGGCATTAGGTCATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTCCTGCTAGAATTCCATCTACCAAAGGCTGGCATTAGGTCATT  507

seq1  TTGCTTCTACTACATTTTCTGAAAATGGGTCATCTCACCTATCCCAATGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTACTACATTTTCTGAAAATGGGTCATCTCACCTATCCCAATGG  557

seq1  GAGCATGTCTGCCACTGAGCGATGGATGACACACCTGTCCCCTGTCCTCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGTCTGCCACTGAGCGATGGATGACACACCTGTCCCCTGTCCTCT  607

seq1  GCCACAGCTAAGCTTAACTTAATCTCAGAATCGAGGAAGGATTTTGGTAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCTAAGCTTAACTTAATCTCAGAATCGAGGAAGGATTTTGGTAG  657

seq1  TGACCATAAAATACTGGAGATGCAGCTGTTTCTGTGGTCAAGGGGGTCAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAAAATACTGGAGATGCAGCTGTTTCTGTGGTCAAGGGGGTCAG  707

seq1  GCTGAAGTCTTCAGATACATCCCCAGGTCCCACAGTCCTGCTTTAAAGAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTCTTCAGATACATCCCCAGGTCCCACAGTCCTGCTTTAAAGAG  757

seq1  CAGTGTGAGCCAGGCATGGTGGCACATGTCTCCTTTGTTTGTTTGTTTGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAGCCAGGCATGGTGGCACATGTCTCCTTTGTTTGTTTGTTTGT  807

seq1  TTGTGTTTTTTCACAACAGTGTTTTTACTCTGCATCCCTGGGTGTCCTAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTTTCACAACAGTGTTTTTACTCTGCATCCCTGGGTGTCCTAG  857

seq1  AACTTAGAGACCCACCTGCCTCTGCCTCCCCAGTGTGGTACTAAAGGTGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAGACCCACCTGCCTCTGCCTCCCCAGTGTGGTACTAAAGGTGT  907

seq1  GTCTCGCCATGCCTGGTTTATGTGGCACACGTCTTTAATCTCAGCAGAGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGCCATGCCTGGTTTATGTGGCACACGTCTTTAATCTCAGCAGAGG  957

seq1  CAGGCTAATCTCTGTGAGTTAGAGGCCGGCCTGGTCTGCATAAAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAATCTCTGTGAGTTAGAGGCCGGCCTGGTCTGCATAAAGAATTC  1007